Tshz1 (teashirt zinc finger homeobox 1) - Rat Genome Database

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Gene: Tshz1 (teashirt zinc finger homeobox 1) Rattus norvegicus
Analyze
Symbol: Tshz1
Name: teashirt zinc finger homeobox 1
RGD ID: 1311684
Description: Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within anterior/posterior pattern specification; middle ear morphogenesis; and soft palate development. Predicted to be active in nucleus. Orthologous to human TSHZ1 (teashirt zinc finger homeobox 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307217; Sdccag33; serologically defined colon cancer antigen 33; teashirt homolog 1; teashirt zinc finger family member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81879,651,256 - 79,727,662 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1879,651,256 - 79,727,662 (-)EnsemblGRCr8
mRatBN7.21877,376,399 - 77,452,815 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1877,377,394 - 77,453,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1879,483,367 - 79,559,841 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01880,155,449 - 80,231,922 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01877,991,086 - 78,067,563 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01880,860,995 - 80,907,744 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1880,862,372 - 80,865,584 (-)Ensemblrn6Rnor6.0
Rnor_5.01879,910,848 - 79,956,064 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41880,536,036 - 80,541,518 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1875,999,997 - 76,045,459 (-)NCBICelera
RGSC_v3.11880,610,862 - 80,619,594 (-)NCBI
Cytogenetic Map18q12.3NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cyproconazole  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Evodiamine  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glafenine  (EXP)
hydroquinone  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
L-methionine  (ISO)
manganese(II) chloride  (EXP)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17586487  


Genomics

Comparative Map Data
Tshz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81879,651,256 - 79,727,662 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1879,651,256 - 79,727,662 (-)EnsemblGRCr8
mRatBN7.21877,376,399 - 77,452,815 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1877,377,394 - 77,453,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1879,483,367 - 79,559,841 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01880,155,449 - 80,231,922 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01877,991,086 - 78,067,563 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01880,860,995 - 80,907,744 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1880,862,372 - 80,865,584 (-)Ensemblrn6Rnor6.0
Rnor_5.01879,910,848 - 79,956,064 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41880,536,036 - 80,541,518 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1875,999,997 - 76,045,459 (-)NCBICelera
RGSC_v3.11880,610,862 - 80,619,594 (-)NCBI
Cytogenetic Map18q12.3NCBI
TSHZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381875,210,797 - 75,289,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1875,210,755 - 75,289,950 (+)Ensemblhg38GRCh38
GRCh371872,922,752 - 73,001,899 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361871,051,719 - 71,130,889 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341871,125,160 - 71,130,665NCBI
Celera1869,741,400 - 69,820,597 (+)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1869,607,516 - 69,686,785 (+)NCBIHuRef
CHM1_11872,917,366 - 72,997,125 (+)NCBICHM1_1
T2T-CHM13v2.01875,440,190 - 75,519,327 (+)NCBIT2T-CHM13v2.0
Tshz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,029,752 - 84,105,833 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,029,752 - 84,105,831 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381884,011,627 - 84,087,708 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,011,627 - 84,087,706 (-)Ensemblmm10GRCm38
MGSCv371884,181,019 - 84,255,954 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361884,145,820 - 84,220,755 (-)NCBIMGSCv36mm8
Celera1885,079,396 - 85,154,615 (-)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
Tshz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540258,695,150 - 58,717,926 (+)NCBIChiLan1.0ChiLan1.0
TSHZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21792,753,877 - 92,832,837 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11878,446,807 - 78,525,462 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01868,597,354 - 68,676,462 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11871,873,600 - 71,951,654 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1871,873,594 - 71,951,654 (+)EnsemblpanPan2panpan1.1
TSHZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114,224,875 - 4,229,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14,226,210 - 4,246,762 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha15,232,697 - 5,310,574 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.014,036,428 - 4,114,380 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14,037,376 - 4,114,612 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114,074,782 - 4,150,945 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014,027,926 - 4,104,426 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014,199,051 - 4,276,954 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tshz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,032,204 - 18,106,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366163,354,232 - 3,427,875 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366163,353,334 - 3,378,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSHZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1148,906,075 - 148,984,832 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11148,905,179 - 148,984,984 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21164,830,580 - 164,837,213 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSHZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1184,622,407 - 4,702,267 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl184,623,731 - 4,626,925 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606021,171,703 - 21,250,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tshz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248065,389,387 - 5,463,240 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248065,389,464 - 5,463,222 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tshz1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11548,280,711 - 48,355,778 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tshz1
507 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:61
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000021750
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185449080186134022Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185782524385493247Rat
634333Pia19Pristane induced arthritis QTL 193.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)187627210481806852Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
70172Eae15Experimental allergic encephalomyelitis QTL 150.001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)187948431184129249Rat
7794793Mcs34Mammary carcinoma susceptibility QTL 341.54mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)186563556785897775Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)186584644786134022Rat
1598832Glom11Glomerulus QTL 112.9kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)185326667186134022Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)186144685386134022Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat

Markers in Region
D18Rat119  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81879,679,203 - 79,679,334 (+)Marker Load Pipeline
mRatBN7.21877,404,351 - 77,404,482 (+)MAPPERmRatBN7.2
Rnor_6.01880,889,356 - 80,889,486NCBIRnor6.0
Rnor_5.01879,937,676 - 79,937,806UniSTSRnor5.0
RGSC_v3.41880,564,011 - 80,564,142RGDRGSC3.4
RGSC_v3.41880,564,012 - 80,564,142UniSTSRGSC3.4
Celera1876,027,071 - 76,027,201UniSTS
RGSC_v3.11880,637,461 - 80,637,592RGD
RH 2.0 Map1857.9RGD
SHRSP x BN Map1848.9499RGD
FHH x ACI Map1861.84RGD
Cytogenetic Map18q12.3UniSTS
RH102961  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21877,376,400 - 77,376,599 (+)MAPPERmRatBN7.2
Rnor_6.01880,860,997 - 80,861,195NCBIRnor6.0
Rnor_5.01879,910,850 - 79,911,048UniSTSRnor5.0
RGSC_v3.41880,536,038 - 80,536,236UniSTSRGSC3.4
Celera1875,999,999 - 76,000,197UniSTS
Cytogenetic Map18q12.3UniSTS
BE120868  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21877,376,597 - 77,376,750 (+)MAPPERmRatBN7.2
Rnor_6.01880,861,194 - 80,861,346NCBIRnor6.0
Rnor_5.01879,911,047 - 79,911,199UniSTSRnor5.0
RGSC_v3.41880,536,235 - 80,536,387UniSTSRGSC3.4
Celera1876,000,196 - 76,000,348UniSTS
RH 3.4 Map18814.3UniSTS
Cytogenetic Map18q12.3UniSTS
AU047890  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81879,686,397 - 79,686,599 (+)Marker Load Pipeline
mRatBN7.21877,411,545 - 77,411,747 (+)MAPPERmRatBN7.2
Rnor_6.01880,896,550 - 80,896,751NCBIRnor6.0
Rnor_5.01879,944,870 - 79,945,071UniSTSRnor5.0
RGSC_v3.41880,571,206 - 80,571,407UniSTSRGSC3.4
Celera1876,034,265 - 76,034,466UniSTS
Cytogenetic Map18q12.3UniSTS
BF409889  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21877,443,734 - 77,443,908 (+)MAPPERmRatBN7.2
Rnor_6.01880,928,739 - 80,928,912NCBIRnor6.0
Rnor_5.01879,977,059 - 79,977,232UniSTSRnor5.0
RGSC_v3.41880,603,395 - 80,603,568UniSTSRGSC3.4
Celera1876,066,258 - 76,066,431UniSTS
RH 3.4 Map18815.8UniSTS
Cytogenetic Map18q12.3UniSTS
ha3102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21877,397,844 - 77,399,331 (+)MAPPERmRatBN7.2
mRatBN7.21881,605,999 - 81,607,200 (+)MAPPERmRatBN7.2
Rnor_6.01880,882,835 - 80,884,321NCBIRnor6.0
Rnor_6.01885,444,046 - 85,445,246NCBIRnor6.0
Rnor_5.01884,495,732 - 84,496,932UniSTSRnor5.0
Rnor_5.01879,931,482 - 79,932,968UniSTSRnor5.0
Cytogenetic Map18q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021750   ⟹   ENSRNOP00000055055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1879,651,256 - 79,727,662 (-)Ensembl
mRatBN7.2 Ensembl1877,377,394 - 77,453,509 (-)Ensembl
Rnor_6.0 Ensembl1880,862,372 - 80,865,584 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000152565   ⟹   ENSRNOP00000101130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1879,651,632 - 79,726,610 (-)Ensembl
RefSeq Acc Id: NM_001400632   ⟹   NP_001387561
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81879,651,256 - 79,727,662 (-)NCBI
mRatBN7.21877,376,399 - 77,452,815 (-)NCBI
RefSeq Acc Id: XM_063277293   ⟹   XP_063133363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81879,651,256 - 79,663,203 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387561 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133363 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75193 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000055055
  ENSRNOP00000055055.3
  ENSRNOP00000101130.1
Ensembl Acc Id: ENSRNOP00000055055   ⟸   ENSRNOT00000021750
RefSeq Acc Id: NP_001387561   ⟸   NM_001400632
- UniProtKB: F1LW29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133363   ⟸   XM_063277293
- Peptide Label: isoform X1
- UniProtKB: A6K5K7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101130   ⟸   ENSRNOT00000152565
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW29-F1-model_v2 AlphaFold F1LW29 1-1070 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311684 AgrOrtholog
BioCyc Gene G2FUF-6753 BioCyc
Ensembl Genes ENSRNOG00000016246 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021750 ENTREZGENE
  ENSRNOT00000021750.7 UniProtKB/TrEMBL
  ENSRNOT00000152565.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Homeobox_dom UniProtKB/TrEMBL
  Teashirt_fam UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 307217 ENTREZGENE
PANTHER PTHR12487 UniProtKB/TrEMBL
  PTHR12487:SF6 UniProtKB/TrEMBL
PhenoGen Tshz1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016246 RatGTEx
SMART HOX UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0ABK0LLL2_RAT UniProtKB/TrEMBL
  A6K5K7 ENTREZGENE, UniProtKB/TrEMBL
  F1LW29 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Tshz1  teashirt zinc finger homeobox 1  Tshz1  teashirt zinc finger family member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Tshz1  teashirt zinc finger family member 1  Sdccag33_predicted  serologically defined colon cancer antigen 33 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Sdccag33_predicted  serologically defined colon cancer antigen 33 (predicted)      Symbol and Name status set to approved 70820 APPROVED