Sap130 (Sin3A associated protein 130) - Rat Genome Database

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Gene: Sap130 (Sin3A associated protein 130) Rattus norvegicus
Analyze
Symbol: Sap130
Name: Sin3A associated protein 130
RGD ID: 1311657
Description: Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic placenta development. Predicted to be located in nuclear speck. Predicted to be part of Sin3-type complex. Orthologous to human SAP130 (Sin3A associated protein 130); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: histone deacetylase complex subunit SAP130; LOC307527; RGD1311657; similar to hypothetical protein 2610304F09; Sin3A associated protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,518,773 - 23,619,840 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1823,518,680 - 23,619,840 (+)EnsemblGRCr8
mRatBN7.21823,244,337 - 23,345,368 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,267,256 - 23,345,359 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd1823,758,803 - 23,836,707 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1823,349,817 - 23,427,721 (+)NCBILyon_Normotensive
Lyon_Hypertensive1823,355,403 - 23,433,311 (+)NCBILyon_Hypertensive
F344_StmMcwi1823,401,527 - 23,479,623 (+)NCBIF344_StmMcwi
Rnor_6.01824,397,523 - 24,497,831 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,397,369 - 24,497,832 (+)Ensemblrn6Rnor6.0
Rnor_5.01824,114,972 - 24,215,235 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41824,053,607 - 24,132,624 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1822,998,465 - 23,098,152 (+)NCBICelera
RGSC_v3.11824,055,529 - 24,158,546 (+)NCBI
Cytogenetic Map18p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22783022  


Genomics

Comparative Map Data
Sap130
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,518,773 - 23,619,840 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1823,518,680 - 23,619,840 (+)EnsemblGRCr8
mRatBN7.21823,244,337 - 23,345,368 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,267,256 - 23,345,359 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd1823,758,803 - 23,836,707 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1823,349,817 - 23,427,721 (+)NCBILyon_Normotensive
Lyon_Hypertensive1823,355,403 - 23,433,311 (+)NCBILyon_Hypertensive
F344_StmMcwi1823,401,527 - 23,479,623 (+)NCBIF344_StmMcwi
Rnor_6.01824,397,523 - 24,497,831 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,397,369 - 24,497,832 (+)Ensemblrn6Rnor6.0
Rnor_5.01824,114,972 - 24,215,235 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41824,053,607 - 24,132,624 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1822,998,465 - 23,098,152 (+)NCBICelera
RGSC_v3.11824,055,529 - 24,158,546 (+)NCBI
Cytogenetic Map18p12NCBI
SAP130
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,941,222 - 128,028,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,941,217 - 128,028,124 (-)Ensemblhg38GRCh38
GRCh372128,698,796 - 128,785,633 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362128,415,266 - 128,501,337 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2122,009,747 - 122,095,715 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2121,004,579 - 121,090,650 (-)NCBIHuRef
CHM1_12128,704,142 - 128,790,201 (-)NCBICHM1_1
T2T-CHM13v2.02128,376,486 - 128,463,363 (-)NCBIT2T-CHM13v2.0
Sap130
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391831,767,436 - 31,856,121 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1831,767,424 - 31,856,114 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381831,634,368 - 31,723,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1831,634,371 - 31,723,061 (+)Ensemblmm10GRCm38
MGSCv371831,794,037 - 31,882,715 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361831,777,393 - 31,866,071 (+)NCBIMGSCv36mm8
Celera1832,120,764 - 32,206,902 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1817.81NCBI
Sap130
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554592,529,373 - 2,602,864 (+)Ensembl
ChiLan1.0NW_0049554592,529,373 - 2,602,864 (+)NCBIChiLan1.0ChiLan1.0
SAP130
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21347,612,348 - 47,700,156 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B47,627,328 - 47,715,133 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B32,243,576 - 32,332,080 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B128,609,262 - 128,696,505 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B128,609,262 - 128,696,505 (-)EnsemblpanPan2panpan1.1
SAP130
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11922,590,059 - 22,673,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1922,590,682 - 22,672,829 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1922,837,203 - 22,920,769 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01923,916,058 - 23,999,273 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1923,916,080 - 23,999,265 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11922,571,364 - 22,654,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01922,815,482 - 22,898,797 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01923,946,514 - 24,029,716 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sap130
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530398,231,076 - 98,302,517 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646943,317,008 - 43,388,184 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646943,315,175 - 43,386,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP130
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1559,312,418 - 59,410,302 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11559,312,401 - 59,408,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21566,024,053 - 66,121,277 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAP130
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1102,196,477 - 2,279,648 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl102,197,622 - 2,279,703 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606120,483,390 - 20,568,488 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sap130
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11512,517,861 - 12,593,408 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sap130
670 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:94
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000022761
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH137794  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21823,345,116 - 23,345,334 (+)MAPPERmRatBN7.2
Rnor_6.01824,497,580 - 24,497,797NCBIRnor6.0
Rnor_5.01824,214,984 - 24,215,201UniSTSRnor5.0
RGSC_v3.41824,132,373 - 24,132,590UniSTSRGSC3.4
Celera1823,097,901 - 23,098,118UniSTS
RH 3.4 Map18279.8UniSTS
Cytogenetic Map18p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022761   ⟹   ENSRNOP00000022761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1823,541,745 - 23,619,840 (+)Ensembl
mRatBN7.2 Ensembl1823,267,256 - 23,345,359 (+)Ensembl
Rnor_6.0 Ensembl1824,397,369 - 24,497,832 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138732   ⟹   ENSRNOP00000107068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1823,542,448 - 23,619,834 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000155977   ⟹   ENSRNOP00000102272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1823,518,706 - 23,619,840 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163641   ⟹   ENSRNOP00000112150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1823,518,680 - 23,619,840 (+)Ensembl
RefSeq Acc Id: NM_001427115   ⟹   NP_001414044
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,541,745 - 23,619,840 (+)NCBI
Dahl_SR_JrHsd1823,758,803 - 23,836,707 (+)NCBI
Lyon_Normotensive1823,349,817 - 23,427,721 (+)NCBI
Lyon_Hypertensive1823,355,403 - 23,433,311 (+)NCBI
F344_StmMcwi1823,401,527 - 23,479,623 (+)NCBI
RefSeq Acc Id: XM_006254605   ⟹   XP_006254667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,518,773 - 23,619,840 (+)NCBI
mRatBN7.21823,244,337 - 23,345,368 (+)NCBI
Rnor_6.01824,397,523 - 24,497,831 (+)NCBI
Rnor_5.01824,114,972 - 24,215,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254606   ⟹   XP_006254668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,518,773 - 23,619,840 (+)NCBI
mRatBN7.21823,244,337 - 23,344,644 (+)NCBI
Rnor_6.01824,397,523 - 24,497,107 (+)NCBI
Rnor_5.01824,114,972 - 24,215,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254607   ⟹   XP_006254669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,542,920 - 23,619,840 (+)NCBI
mRatBN7.21823,268,313 - 23,344,644 (+)NCBI
Rnor_6.01824,420,791 - 24,497,107 (+)NCBI
Rnor_5.01824,114,972 - 24,215,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601086   ⟹   XP_017456575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,518,773 - 23,619,840 (+)NCBI
mRatBN7.21823,244,337 - 23,344,644 (+)NCBI
Rnor_6.01824,397,523 - 24,497,107 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097316   ⟹   XP_038953244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,542,463 - 23,619,840 (+)NCBI
mRatBN7.21823,267,988 - 23,344,644 (+)NCBI
RefSeq Acc Id: XM_039097317   ⟹   XP_038953245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,518,773 - 23,588,059 (+)NCBI
mRatBN7.21823,244,337 - 23,313,586 (+)NCBI
RefSeq Acc Id: XM_063277386   ⟹   XP_063133456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,541,699 - 23,619,840 (+)NCBI
RefSeq Acc Id: XM_063277387   ⟹   XP_063133457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,542,462 - 23,619,840 (+)NCBI
RefSeq Acc Id: XM_063277388   ⟹   XP_063133458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81823,541,699 - 23,619,840 (+)NCBI
RefSeq Acc Id: XP_006254667   ⟸   XM_006254605
- Peptide Label: isoform X1
- UniProtKB: D3ZLP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254668   ⟸   XM_006254606
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006254669   ⟸   XM_006254607
- Peptide Label: isoform X3
- UniProtKB: D3ZLP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456575   ⟸   XM_017601086
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000022761   ⟸   ENSRNOT00000022761
RefSeq Acc Id: XP_038953245   ⟸   XM_039097317
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038953244   ⟸   XM_039097316
- Peptide Label: isoform X3
- UniProtKB: D3ZLP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133456   ⟸   XM_063277386
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133458   ⟸   XM_063277388
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001414044   ⟸   NM_001427115
- UniProtKB: D3ZLP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133457   ⟸   XM_063277387
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000102272   ⟸   ENSRNOT00000155977
Ensembl Acc Id: ENSRNOP00000107068   ⟸   ENSRNOT00000138732
Ensembl Acc Id: ENSRNOP00000112150   ⟸   ENSRNOT00000163641
Protein Domains
Histone deacetylase complex subunit SAP130 C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLP9-F1-model_v2 AlphaFold D3ZLP9 1-1071 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311657 AgrOrtholog
BioCyc Gene G2FUF-8057 BioCyc
Ensembl Genes ENSRNOG00000016773 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022761 ENTREZGENE
  ENSRNOT00000022761.9 UniProtKB/TrEMBL
  ENSRNOT00000138732 ENTREZGENE
  ENSRNOT00000138732.1 UniProtKB/TrEMBL
  ENSRNOT00000155977.1 UniProtKB/TrEMBL
  ENSRNOT00000163641 ENTREZGENE
  ENSRNOT00000163641.1 UniProtKB/TrEMBL
InterPro His_deAcase_cplx_SAP130 UniProtKB/TrEMBL
  SAP130_C UniProtKB/TrEMBL
NCBI Gene 307527 ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 UniProtKB/TrEMBL
  PTHR13497 UniProtKB/TrEMBL
Pfam SAP130_C UniProtKB/TrEMBL
PhenoGen Sap130 PhenoGen
RatGTEx ENSRNOG00000016773 RatGTEx
UniProt A0ABK0LK62_RAT UniProtKB/TrEMBL
  A0ABK0LMW0_RAT UniProtKB/TrEMBL
  A0ABK0MAF5_RAT UniProtKB/TrEMBL
  D3ZLP9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Sap130  Sin3A associated protein 130  Sap130  Sin3A associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sap130  Sin3A associated protein  Sap130_predicted  Sin3A associated protein 130 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Sap130_predicted  Sin3A associated protein 130 (predicted)  RGD1311657_predicted  similar to hypothetical protein 2610304F09 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1311657_predicted  similar to hypothetical protein 2610304F09 (predicted)  LOC307527_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307527_predicted  similar to hypothetical protein 2610304F09 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL