Terf1 (telomeric repeat binding factor 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Terf1 (telomeric repeat binding factor 1) Rattus norvegicus
Analyze
Symbol: Terf1
Name: telomeric repeat binding factor 1
RGD ID: 1311574
Description: Predicted to enable several functions, including DNA binding activity; ankyrin repeat binding activity; and protein homodimerization activity. Predicted to contribute to telomerase activity. Involved in response to xenobiotic stimulus. Predicted to be located in chromosome, telomeric region; nuclear lumen; and spindle. Predicted to be part of shelterin complex. Orthologous to human TERF1 (telomeric repeat binding factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC297758; MGC109063; telomeric repeat binding factor (NIMA-interacting) 1; telomeric repeat-binding factor 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr858,226,345 - 8,255,614 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl58,226,345 - 8,255,753 (-)EnsemblGRCr8
mRatBN7.253,443,103 - 3,472,377 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl53,443,106 - 3,472,340 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx55,560,595 - 5,589,792 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.057,199,479 - 7,228,676 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.056,896,804 - 6,926,212 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd58,126,930 - 8,156,338 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive59,633,928 - 9,663,336 (-)NCBILyon_Normotensive
Lyon_Hypertensive58,998,700 - 9,028,108 (-)NCBILyon_Hypertensive
F344_StmMcwi52,842,662 - 2,872,070 (-)NCBIF344_StmMcwi
Rnor_6.052,853,455 - 2,882,731 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl52,853,459 - 2,882,668 (-)Ensemblrn6Rnor6.0
Rnor_5.052,843,150 - 2,872,418 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.452,556,918 - 2,586,086 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera53,039,138 - 3,068,345 (-)NCBICelera
RGSC_v3.152,556,917 - 2,586,086 (-)NCBI
Cytogenetic Map5q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cyclosporin A  (ISO)
cypermethrin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
geraniol  (ISO)
idarubicin  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
methamphetamine  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N(4)-hydroxycytidine  (ISO)
oxaliplatin  (EXP)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
phosphoramide mustard  (EXP)
pirinixic acid  (ISO)
pterostilbene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tebuconazole  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Expression of TRF1, TRF2, TIN2, TERT, KU70, and BRCA1 proteins is associated with telomere shortening and may contribute to multistage carcinogenesis of gastric cancer. Hu H, etal., J Cancer Res Clin Oncol. 2010 Feb 2.
4. Increased telomere fragility and fusions resulting from TRF1 deficiency lead to degenerative pathologies and increased cancer in mice. Martinez P, etal., Genes Dev. 2009 Sep 1;23(17):2060-75. Epub 2009 Aug 13.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Telomere-mediated genomic instability and the clinico-pathological parameters in breast cancer. Poonepalli A, etal., Genes Chromosomes Cancer. 2008 Dec;47(12):1098-109.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Doxorubicin induces senescence or apoptosis in rat neonatal cardiomyocytes by regulating the expression levels of the telomere binding factors 1 and 2. Spallarossa P, etal., Am J Physiol Heart Circ Physiol. 2009 Dec;297(6):H2169-81. Epub 2009 Oct 2.
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:1406665   PMID:7502076   PMID:9034193   PMID:9130722   PMID:9391075   PMID:11313893   PMID:11327863   PMID:11701125   PMID:11854288   PMID:11943150   PMID:11971978   PMID:12768206  
PMID:12782650   PMID:15109494   PMID:15133513   PMID:15200954   PMID:15380063   PMID:15383534   PMID:15608617   PMID:15968270   PMID:16880378   PMID:17010969   PMID:17053789   PMID:17389648  
PMID:17694070   PMID:17982445   PMID:19135898   PMID:19265708   PMID:19487455   PMID:19854130   PMID:21119197   PMID:21852327   PMID:22039056   PMID:23685356   PMID:24120135   PMID:24270157  
PMID:24415760   PMID:24589552   PMID:25589350   PMID:26586433  


Genomics

Comparative Map Data
Terf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr858,226,345 - 8,255,614 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl58,226,345 - 8,255,753 (-)EnsemblGRCr8
mRatBN7.253,443,103 - 3,472,377 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl53,443,106 - 3,472,340 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx55,560,595 - 5,589,792 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.057,199,479 - 7,228,676 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.056,896,804 - 6,926,212 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd58,126,930 - 8,156,338 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive59,633,928 - 9,663,336 (-)NCBILyon_Normotensive
Lyon_Hypertensive58,998,700 - 9,028,108 (-)NCBILyon_Hypertensive
F344_StmMcwi52,842,662 - 2,872,070 (-)NCBIF344_StmMcwi
Rnor_6.052,853,455 - 2,882,731 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl52,853,459 - 2,882,668 (-)Ensemblrn6Rnor6.0
Rnor_5.052,843,150 - 2,872,418 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.452,556,918 - 2,586,086 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera53,039,138 - 3,068,345 (-)NCBICelera
RGSC_v3.152,556,917 - 2,586,086 (-)NCBI
Cytogenetic Map5q11NCBI
TERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,008,864 - 73,048,123 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,008,833 - 73,048,123 (+)Ensemblhg38GRCh38
GRCh37873,921,099 - 73,960,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,083,661 - 74,122,281 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34874,083,662 - 74,122,281NCBI
Celera869,918,262 - 69,957,163 (+)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef869,411,980 - 69,450,876 (+)NCBIHuRef
CHM1_1873,973,943 - 74,012,842 (+)NCBICHM1_1
T2T-CHM13v2.0873,437,901 - 73,477,172 (+)NCBIT2T-CHM13v2.0
Terf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,875,634 - 15,914,283 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,875,870 - 15,914,276 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38115,805,546 - 15,844,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,805,646 - 15,844,052 (+)Ensemblmm10GRCm38
MGSCv37115,795,739 - 15,833,510 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36115,790,872 - 15,828,643 (+)NCBIMGSCv36mm8
Celera115,750,793 - 15,788,563 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.88NCBI
Terf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554447,103,552 - 7,150,323 (-)Ensembl
ChiLan1.0NW_0049554447,103,282 - 7,149,450 (-)NCBIChiLan1.0ChiLan1.0
TERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2788,753,525 - 88,792,513 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1864,383,202 - 64,422,226 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0869,545,115 - 69,583,997 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1871,192,716 - 71,231,648 (+)NCBIPanPan1.1PanPan1.1panPan2
TERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12921,664,378 - 21,701,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2921,664,186 - 21,700,495 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2921,929,296 - 21,966,341 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02921,773,860 - 21,811,415 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2921,773,883 - 21,811,414 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12921,832,463 - 21,869,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02921,868,610 - 21,906,117 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02922,149,876 - 22,187,001 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Terf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530357,612,694 - 57,639,199 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366481,809,395 - 1,835,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,797,000 - 62,831,454 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1462,797,244 - 62,831,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2468,341,702 - 68,375,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TERF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,608,830 - 68,647,220 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl868,608,844 - 68,648,171 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603972,734,995 - 72,774,562 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Terf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474418,121,687 - 18,156,989 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474418,120,677 - 18,156,920 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Terf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11150,210,028 - 150,238,508 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Terf1
175 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:66
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000049741
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)519895442Rat
631551Vetf1Vascular elastic tissue fragility QTL 150.0001aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)5706553510687501Rat

Markers in Region
RH130969  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.253,443,177 - 3,443,366 (+)MAPPERmRatBN7.2
Rnor_6.052,853,530 - 2,853,718NCBIRnor6.0
Rnor_5.052,843,225 - 2,843,413UniSTSRnor5.0
RGSC_v3.452,556,989 - 2,557,177UniSTSRGSC3.4
Celera53,039,209 - 3,039,397UniSTS
Cytogenetic Map5q11UniSTS
RH138681  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr858,226,944 - 8,227,113 (+)Marker Load Pipeline
mRatBN7.253,443,706 - 3,443,875 (+)MAPPERmRatBN7.2
Rnor_6.052,854,059 - 2,854,227NCBIRnor6.0
Rnor_5.052,843,754 - 2,843,922UniSTSRnor5.0
RGSC_v3.452,557,518 - 2,557,686UniSTSRGSC3.4
Celera53,039,738 - 3,039,906UniSTS
Cytogenetic Map5q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000049741   ⟹   ENSRNOP00000043160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl58,226,345 - 8,255,610 (-)Ensembl
mRatBN7.2 Ensembl53,443,106 - 3,472,340 (-)Ensembl
Rnor_6.0 Ensembl52,853,459 - 2,882,668 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108921   ⟹   ENSRNOP00000077638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl58,226,345 - 8,255,753 (-)Ensembl
mRatBN7.2 Ensembl53,443,106 - 3,472,340 (-)Ensembl
RefSeq Acc Id: NM_001012464   ⟹   NP_001012482
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr858,226,345 - 8,255,554 (-)NCBI
mRatBN7.253,443,107 - 3,472,316 (-)NCBI
Dahl_SR_JrHsd58,126,930 - 8,156,338 (-)NCBI
Lyon_Normotensive59,633,928 - 9,663,336 (-)NCBI
Lyon_Hypertensive58,998,700 - 9,028,108 (-)NCBI
F344_StmMcwi52,842,662 - 2,872,070 (-)NCBI
Rnor_6.052,853,459 - 2,882,668 (-)NCBI
Rnor_5.052,843,150 - 2,872,418 (-)NCBI
RGSC_v3.452,556,918 - 2,586,086 (-)RGD
Celera53,039,138 - 3,068,345 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237729   ⟹   XP_006237791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr858,226,779 - 8,255,614 (-)NCBI
mRatBN7.253,443,103 - 3,472,374 (-)NCBI
Rnor_6.052,853,455 - 2,882,731 (-)NCBI
Rnor_5.052,843,150 - 2,872,418 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001012482 (Get FASTA)   NCBI Sequence Viewer  
  XP_006237791 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89888 (Get FASTA)   NCBI Sequence Viewer  
  EDM11517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000043160
  ENSRNOP00000043160.2
  ENSRNOP00000077638
  ENSRNOP00000077638.1
RefSeq Acc Id: NP_001012482   ⟸   NM_001012464
- UniProtKB: Q5EB98 (UniProtKB/TrEMBL),   A6JFC1 (UniProtKB/TrEMBL),   F7EVI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237791   ⟸   XM_006237729
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y1U3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000043160   ⟸   ENSRNOT00000049741
Ensembl Acc Id: ENSRNOP00000077638   ⟸   ENSRNOT00000108921
Protein Domains
HTH myb-type   Myb-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5EB98-F1-model_v2 AlphaFold Q5EB98 1-421 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693527
Promoter ID:EPDNEW_R4052
Type:multiple initiation site
Name:Terf1_1
Description:telomeric repeat binding factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.052,882,682 - 2,882,742EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311574 AgrOrtholog
BioCyc Gene G2FUF-42296 BioCyc
Ensembl Genes ENSRNOG00000007291 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049741 ENTREZGENE
  ENSRNOT00000049741.4 UniProtKB/TrEMBL
  ENSRNOT00000108921 ENTREZGENE
  ENSRNOT00000108921.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.210 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7374057 IMAGE-MGC_LOAD
InterPro Homeodomain-like UniProtKB/TrEMBL
  HTH_Myb-type_DNA-bd UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_dom UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_sf UniProtKB/TrEMBL
  TERF1/2 UniProtKB/TrEMBL
  TRBD-Containing_Protein UniProtKB/TrEMBL
KEGG Report rno:297758 UniProtKB/TrEMBL
MGC_CLONE MGC:109063 IMAGE-MGC_LOAD
NCBI Gene 297758 ENTREZGENE
PANTHER TELOMERIC REPEAT-BINDING FACTOR 1 UniProtKB/TrEMBL
  TELOMERIC REPEAT-BINDING FACTOR 1 TERF1 UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  TRF UniProtKB/TrEMBL
PharmGKB TERF1 RGD
PhenoGen Terf1 PhenoGen
PIRSF Telomere_bd-1_Pin2 UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007291 RatGTEx
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Telo_rept_bnd_D UniProtKB/TrEMBL
UniProt A0A8I5Y1U3 ENTREZGENE, UniProtKB/TrEMBL
  A6JFC1 ENTREZGENE, UniProtKB/TrEMBL
  F7EVI5 ENTREZGENE, UniProtKB/TrEMBL
  Q5EB98 ENTREZGENE
UniProt Secondary Q5EB98 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Terf1  telomeric repeat binding factor 1  Terf1  telomeric repeat binding factor (NIMA-interacting) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Terf1  telomeric repeat binding factor (NIMA-interacting) 1  Terf1  telomeric repeat binding factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Terf1  telomeric repeat binding factor 1  Terf1_predicted  telomeric repeat binding factor 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Terf1_predicted  telomeric repeat binding factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED