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Gene: Nup93 (nucleoporin 93) Rattus norvegicus

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Symbol:

Nup93

Name:

nucleoporin 93

RGD ID:

1311525

Description:

Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport; nucleus organization; and positive regulation of SMAD protein signal transduction. Located in nuclear envelope. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93); PARTICIPATES IN RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

93 kDa nucleoporin; LOC291874; nuclear pore complex protein Nup93; nucleoporin 93kDa; nucleoporin Nup93

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUP93 (nucleoporin 93)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nup93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nup93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUP93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUP93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nup93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUP93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUP93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nup93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nup93 (nucleoporin 93)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NUP93 (nucleoporin 93)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nup93 (nucleoporin 93)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nup93 (nucleoporin 93)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NIC96	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nup93-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nup93-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	npp-13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nup93	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,690,154 - 10,793,937 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	10,687,115 - 10,793,380 (-)	Ensembl				GRCr8
mRatBN7.2	19	10,684,214 - 10,788,009 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,682,075 - 10,788,026 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	10,647,235 - 10,750,757 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	11,414,073 - 11,517,597 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,701,063 - 10,804,589 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	10,679,896 - 10,784,843 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	14,490,435 - 14,593,900 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	14,983,328 - 15,086,812 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	10,531,935 - 10,636,879 (-)	NCBI		F344_StmMcwi
Rnor_6.0	19	11,159,769 - 11,263,980 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	11,159,774 - 11,263,980 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	11,137,500 - 11,238,898 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	11,124,681 - 11,223,870 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	10,571,493 - 10,674,188 (-)	NCBI		Celera
RGSC_v3.1	19	11,129,511 - 11,228,696 (-)	NCBI
Cytogenetic Map	19	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

focal segmental glomerulosclerosis (ISO)

genetic disease (ISO)

nephrotic syndrome (ISO)

nephrotic syndrome type 12 (ISO)

nephrotic syndrome type 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

alpha-pinene (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

cordycepin (ISO)

coumarin (ISO)

Cuprizon (EXP,ISO)

cyclosporin A (ISO)

DDE (ISO)

dextran sulfate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

Evodiamine (ISO)

fenamidone (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

methidathion (ISO)

methimazole (EXP)

nitrates (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (EXP)

resveratrol (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA transport (IEA)

nuclear envelope organization (IEA,ISO,ISS)

nuclear pore complex assembly (IEA,ISO,ISS)

nucleocytoplasmic transport (IEA)

poly(A)+ mRNA export from nucleus (IBA)

positive regulation of SMAD protein signal transduction (IEA,ISO,ISS)

protein import into nucleus (IBA)

protein transport (IEA)

Cellular Component

centrosome (IEA,ISO)

nuclear envelope (IDA,IEA,ISO)

nuclear membrane (IEA,ISO,ISS)

nuclear periphery (IEA,ISO,ISS)

nuclear pore (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

structural constituent of nuclear pore (IBA,IEA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA transport pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mutations in nuclear pore genes NUP93, NUP205 and XPO5 cause steroid-resistant nephrotic syndrome.	Braun DA, etal., Nat Genet. 2016 Apr;48(4):457-65. doi: 10.1038/ng.3512. Epub 2016 Feb 15.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9348540	PMID:12477932	PMID:12802065	PMID:15229283	PMID:19946888	PMID:22082260	PMID:23106098	PMID:36807413

Genomics

Comparative Map Data

Nup93
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,690,154 - 10,793,937 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	10,687,115 - 10,793,380 (-)	Ensembl				GRCr8
mRatBN7.2	19	10,684,214 - 10,788,009 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,682,075 - 10,788,026 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	10,647,235 - 10,750,757 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	11,414,073 - 11,517,597 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,701,063 - 10,804,589 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	10,679,896 - 10,784,843 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	14,490,435 - 14,593,900 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	14,983,328 - 15,086,812 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	10,531,935 - 10,636,879 (-)	NCBI		F344_StmMcwi
Rnor_6.0	19	11,159,769 - 11,263,980 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	11,159,774 - 11,263,980 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	11,137,500 - 11,238,898 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	11,124,681 - 11,223,870 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	10,571,493 - 10,674,188 (-)	NCBI		Celera
RGSC_v3.1	19	11,129,511 - 11,228,696 (-)	NCBI
Cytogenetic Map	19	p12	NCBI

NUP93
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	56,730,129 - 56,850,286 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	56,730,095 - 56,850,286 (+)	Ensembl			hg38	GRCh38
GRCh37	16	56,764,041 - 56,884,198 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	55,321,608 - 55,436,178 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	55,321,607 - 55,436,177	NCBI
Celera	16	41,261,349 - 41,377,957 (+)	NCBI		Celera
Cytogenetic Map	16	q13	NCBI
HuRef	16	42,633,146 - 42,748,366 (+)	NCBI		HuRef
CHM1_1	16	58,170,944 - 58,286,883 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	62,525,082 - 62,646,588 (+)	NCBI		T2T-CHM13v2.0

Nup93
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	94,941,203 - 95,043,858 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	94,941,192 - 95,043,855 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	94,214,564 - 94,328,100 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	94,214,564 - 94,317,227 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	96,738,501 - 96,838,966 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	97,103,730 - 97,204,195 (+)	NCBI		MGSCv36	mm8
Celera	8	98,546,731 - 98,646,788 (+)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	46.4	NCBI

Nup93
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	14,407,962 - 14,535,500 (+)	Ensembl
ChiLan1.0	NW_004955433	14,408,079 - 14,533,292 (+)	NCBI	ChiLan1.0	ChiLan1.0

NUP93
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	66,203,555 - 66,316,812 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	72,121,827 - 72,237,502 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	37,007,481 - 37,122,785 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	56,140,546 - 56,255,561 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	56,140,546 - 56,255,561 (+)	Ensembl			panPan2	panpan1.1

NUP93
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	59,465,482 - 59,573,871 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	59,465,487 - 59,574,033 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	56,094,117 - 56,202,511 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	60,004,861 - 60,113,330 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	60,004,865 - 60,142,347 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	56,835,743 - 56,944,123 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	57,842,840 - 57,952,923 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	58,737,314 - 58,846,012 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nup93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	50,561,224 - 50,658,755 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	8,930,314 - 9,032,287 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	8,930,320 - 9,027,840 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUP93
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	18,711,911 - 18,827,887 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	18,711,869 - 18,827,705 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

NUP93
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	42,679,764 - 42,794,103 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	42,679,781 - 42,794,097 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	33,555,134 - 33,667,985 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nup93
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	29,153,503 - 29,253,146 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	29,153,503 - 29,271,518 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nup93
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	1,119,436 - 1,222,497 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nup93
793 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	288
Count of miRNA genes:	200
Interacting mature miRNAs:	233
Transcripts:	ENSRNOT00000025086
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

D19Rat36

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	10,795,708 - 10,795,927 (+)	Marker Load Pipeline
mRatBN7.2	19	10,789,780 - 10,789,999 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	11,265,752 - 11,265,970	NCBI	Rnor6.0
Rnor_5.0	19	11,240,670 - 11,240,888	UniSTS	Rnor5.0
RGSC_v3.4	19	11,225,642 - 11,225,860	UniSTS	RGSC3.4
RGSC_v3.4	19	11,225,641 - 11,225,860	RGD	RGSC3.4
Celera	19	10,675,960 - 10,676,178	UniSTS
RGSC_v3.1	19	11,230,468 - 11,230,686	RGD
RH 3.4 Map	19	106.19	UniSTS
RH 3.4 Map	19	106.19	RGD
SHRSP x BN Map	19	6.8199	RGD
SHRSP x BN Map	19	6.8199	UniSTS
Cytogenetic Map	19	p12	UniSTS

D19Got102

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	10,788,946 - 10,789,070 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	11,264,918 - 11,265,041	NCBI	Rnor6.0
Rnor_5.0	19	11,239,836 - 11,239,959	UniSTS	Rnor5.0
RGSC_v3.4	19	11,224,808 - 11,224,931	UniSTS	RGSC3.4
Celera	19	10,675,126 - 10,675,249	UniSTS
Cytogenetic Map	19	p12	UniSTS

RH141887

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	10,788,194 - 10,788,374 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	11,264,166 - 11,264,345	NCBI	Rnor6.0
Rnor_5.0	19	11,239,084 - 11,239,263	UniSTS	Rnor5.0
RGSC_v3.4	19	11,224,056 - 11,224,235	UniSTS	RGSC3.4
Celera	19	10,674,374 - 10,674,553	UniSTS
RH 3.4 Map	19	111.3	UniSTS
Cytogenetic Map	19	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025086 ⟹ ENSRNOP00000025086

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,690,159 - 10,793,380 (-)	Ensembl
mRatBN7.2 Ensembl	19	10,684,217 - 10,788,026 (-)	Ensembl
Rnor_6.0 Ensembl	19	11,159,774 - 11,263,980 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096162 ⟹ ENSRNOP00000083330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,690,159 - 10,774,915 (-)	Ensembl
mRatBN7.2 Ensembl	19	10,684,217 - 10,788,026 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108218 ⟹ ENSRNOP00000094077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,690,159 - 10,786,846 (-)	Ensembl
mRatBN7.2 Ensembl	19	10,684,217 - 10,769,121 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116116 ⟹ ENSRNOP00000077823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,687,115 - 10,774,915 (-)	Ensembl
mRatBN7.2 Ensembl	19	10,682,075 - 10,788,011 (-)	Ensembl

RefSeq Acc Id:

NM_001011925 ⟹ NP_001011925

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,690,154 - 10,793,937 (-)	NCBI
mRatBN7.2	19	10,684,214 - 10,788,009 (-)	NCBI
Dahl_SR_JrHsd	19	10,679,896 - 10,784,843 (-)	NCBI
Lyon_Normotensive	19	14,490,435 - 14,593,900 (-)	NCBI
Lyon_Hypertensive	19	14,983,328 - 15,086,812 (-)	NCBI
F344_StmMcwi	19	10,531,935 - 10,636,879 (-)	NCBI
Rnor_6.0	19	11,159,769 - 11,263,980 (-)	NCBI
Rnor_5.0	19	11,137,500 - 11,238,898 (-)	NCBI
RGSC_v3.4	19	11,124,681 - 11,223,870 (-)	RGD
Celera	19	10,571,493 - 10,674,188 (-)	RGD

Sequence:

show sequence

GAAGCGGCGGCGGCGGCGTAGTGAAGTAGCCGGGAGCTGGCGGCGAGCAGGCGGCAGAGCCAGC
ATCTGCATCTCCAATGGATACTGAGGGATTTGGTGAGCTCCTTCAGCAAGCTGAACAGCTTGCT
GCTGAGACCGAAGGCATCTCTGAGCTTCCACATGTAGAACGAAATTTACAGGAGATCCAGCAAG
CGGGTGAGCGCCTGCGTTCCCGTACCCTCACACGAACATCCCAGGAGACAGCAGATGTCAAGGC
ATCAGTTCTTCTCGGGTCACGTGGACTTGACATATCCCACATCTCCCAGAGACTGGAGAGTCTG
AGTGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGAAGGACACGGACATTCAGGGCTTCCTGA
AGAATGAGAAAGATAATGCCTTGCTGTCTGCTATCGAAGAGTCCCGGAAGAGGACCTTTGGCAT
GGCTGAGGAGTATCATCGAGAGTCAATGCTGGTCGAGTGGGAACAGGTGAAACAAAGAATTCTG
CATACGCTGCTGGCATCAGGGGAGGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGTTACG
TCAGCGATGTGAGTCCTCCTGGCCGAAGCTCTCTGGATAGCATTGAGATGGCCTATGCCCGGCA
GATCTACATCTATAATGAGAAGATCGTGAGTGGACACCTACAGCCCAACCTGGTGGACCTGTGT
GCCTCTGTCGCAGAGCTGGATGACAAGAGCATTTCTGACATGTGGGCCATGGTAAAACAAATGA
CAGATGTGGTCCTGACACCGGCAACTGACGCCCTGAAGAGCCGAAGCAGTGTGGAAGTGCGCAT
GGATTTTGTCAAGCAGGCCTTGGGATACCTTGAGCAGAGTTATAAAAATTACACCCTTGTGACT
GTCTTTGGAAACCTGCATCAGGCACAGCTGGGCGGTGTGCCTGGGACTTACCAGCTGGTTCGCA
GTTTTCTAAACATTAAGTTGCCAGCTCCCTCACCAGGACTTCAGGATGGAGAGGTAGAAGGCCA
TCCGGTCTGGGCGTTAATTTATTACTGCATGCGCTGTGGAGACCTGCTTGCTGCATCACAAGTC
GTCAGTCGAGCCCAGCACCAGCTGGGGGAATTTAAAACCTGGTTCCAGGAATACATGAACAGCA
AGGATAGAAGATTGTCTCCAGCTACTGAGAACAAACTCCGGCTTCACTACCGCAGAGCCCTCAG
GAACAACACAGACCCCTACAAGCGAGCTGTGTACTGTATCATTGGGAGATGCGACATCACCGAC
AACCAGAGCGAAGTAGCAGACAAGACCGAGGACTACCTGTGGTTAAAACTGAACCAGGTGTGTT
TCGATGATGACGGCACCAGCTCGCCACAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAGCT
GCTAGAGGACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGCCCTTCCTCTACTTCCAAGTG
CTGTTCCTGACTGCACAGTTTGAAGCTGCCATTGCCTTTCTCTTCCGCATGGAGCGGCTGCGCT
GCCATGCTGTCCATGTGGCCCTGGTGCTGTTTGAGCTAAAGCTGCTTTTAAAGTCCTCCGGGCA
GAGTGCTCAGCTCCTCAGCCACGAGCCTGGTGACCCTCCCTGCATGCGACGGCTGAACTTTGTG
CGTCTACTCATGCTCTACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAGCCCTGCAGTACT
TTTACTTCCTCAGGGATGAGAAAGACAGTCAAGGAGAAAACATGTTTCTGCGCTGTGTGAGTGA
GCTTGTGATAGAAAGTCGAGAGTTTGATATGATTCTTGGGAAGCTAGAGAATGACGGAAGTAGA
AAGCCTGGAGTCATAGATAAGTTTACCAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCCG
TGGCAGAAAATAAAGGACTATTTGAAGAAGCAGCCAAGCTTTATGACCTTGCCAAGAATGCGGA
CAAGGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGTGGTCCCACAGATCAGCGCCCCACAG
TCTAACAAGGAAAGGCTGAAGAACATGGCCCTCTCCATTGCAGAGCGGTACAGGGCTCAGGGAA
TAAGTGCAAATAAGTTTGTGGACTCTACGTTCTATCTCCTCTTGGACCTGATCACCTTTTTTGA
CGAATATCACAGTGGTCATATTGACAGAGCCTTCGATATTATCGACCGCTTGAAGCTGGTGCCT
CTGAATCAGGAAAGTATGGAAGAAAGGGTGGCTGCCTTCAGAAACTTCAGTGACGAAATCAGGC
ACAACCTCTCGGAAGTTCTTCTCGCCACCATGAACATCCTGTTCACACAGTTTAAGAGGCTCAA
GGGAACAAGCCCATCTTCAGCAACCAGGCCCCAGCGAGTCATCGAAGACCGTGACTCTCAACTC
CGAAGTCAAGCCAGAGCCCTGATTACCTTTGCTGGGATGATACCGTACCGGACGTCTGGGGACA
CTAATGCCAGGCTGGTGCAGATGGAGGTCCTGATGAATTAAGCGCTGTGTGATGGGGTCTGAGG
TTGCACAGTCTATTAGGCATGTGGCCAGCTGGTGTGGGTTTCCAGTTCCGTTTCTGTTGTGTTG
TGTTTTGTTTTTTGTATTATGTATTTTTGTCAATACCAATAAATTTCTTTGATTTATATTTCTT
TTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008772282 ⟹ XP_008770504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,690,154 - 10,738,126 (-)	NCBI
mRatBN7.2	19	10,684,214 - 10,732,176 (-)	NCBI
Rnor_6.0	19	11,159,769 - 11,210,239 (-)	NCBI

Sequence:

show sequence

TTCATGGACAGAGGGAAAGGCTCTGAACTGGTTTAAAATTTATTCTGCTACAAAGAAACATCCT
GTTAATTTTGGGGGTGGGGTTAGTAAAGAGTAAAAAGGTCTTATAGATTCAGCGCAGTGATATT
TTGCTTTTAAGTAAACAAAGAGTGTCTTCTCACTTCCCCATGTGACATCAGATTCTGTGTCAGT
GGGGTATTTTGACTTTTACCACACTTGGGATCTTTTTTCTTGCTCCTTCCATTTTCAGACAGAA
CCCTTATTGCTGCATGTCTGCTATGCTCAATACAGATTTATTTGATAAAAGACAAATGAGTTTG
CTTCTTGTACTGGTTCAGAGAGAAGTCCCCCAGGATTGTCTTTTGTTCAGTAATTGGAGGCTAA
GCCGAGCCTGGTTAATTTCAAAGCCACCCCAACACATGCTCCTGCCTTCCTCCTTGTGCAGTTC
TGAGCTGCTGGTGGTACCTTCCTTGTATTGGGTCTGGAACAAAAACCTGAATTGTTGAATGTCA
ACAACAACTATTGTGACATCTGCTATGGCACTGAATAGCACTGTTGGTGCGGTTAATTTTAAGT
TAGGATCAGAAACTTAGAAAGCTTTTCAGCTTTATCGCCCTTGTTAGCAACATGCACATCTGAG
CTAGGAATTTGCTGCTGTCGCAGTGAAAGACCAGCATCCCTGGGCGTCTCTCTGTGCCAGTGTC
CTAAGTTCCCTCCGTGTCTGACTCTGTTCTGACACCACTGTGTGGTGTGCTCCTGCGTTCATTT
CTTTTGTCAGTGGCTTTGATTTGTTTGTGAGGTAGAAATGTCAGAAGCATCTCAATTTGGGTAT
CTAATTGACAAGTTTTGATGTAAGAAATATGTGAATTATATTATTAGGATTTTTTTTAAGCACC
AAAGTCTATGACTTGGTTCTGTTTCTTAAGATACAAATGATGATGATAGAATAAACAACCTTAA
GTACCCAAACTCTGGATGCTGAGTGGCCAGATTAATATTTTTGCCAAAGTGCATTATGACATTG
GCGTGTATCCATATCACTCAGGTTCTGTACGTGTGGGGTTGTAACTGTAGGGGTTGGGTTTGCA
GCCAACAGATTACACTCTCGGGTTCTCTGATATGGCTTTGCAGAGGGGATGTCTCAGGTTTTCT
CTCCCGTGCATGCCCTCTCACTAACTGGTCTGACTTTACCCACCTTGGTGCAGTCTAATCTTTG
CTGTTTTATAGAAACCTTCTTGTCATTGCACACTTATTCGCTGCATTGAGTTTTCTTTTGTTAC
AGTGAAAAACATTCGTATCTTGATCTTTAATTTCCAGGATGTGTATTAAACATGTGCAGAAAAA
ATAACCTTTTTCTGACAAGCACCTTAAAAATTGTTGCAGTAGAATGGGAACATTCATTACATAC
ACATCATATGTTTTCCCCCGAAATGTTGTACTAAGAAGTGACAGTTGAGCTGAGCATATGTTAA
TAAAAGGCCAGCATTTTCCTGTGTCACTGACAGTTTCATTGGCTGTATATTCCTGAAATGCAAA
TAACCTCTGTTCTGTTCAAAGATATAATTAACCCAAGTAGTTATTTAGTATCAAAATCTTTTAA
CTACTCAGAGACCAAGCATTTAAGATGGTGAATTTACTGCTCTCTCTGAAGGGCAGTGCAGTTG
ACAAGGGCATGGTGTCTGAGACAATCCTGCACGTTGGAGCTACATATTCTGTAGACTAAAATAG
CAGAATCTGCCTGCTGCTGTACAAAGTCTTTAACTACCATTTATTTTAGCATCATGACATGTGC
AGATTTCTGCTGCTCAGTTAAGGACCCGCTTTGCACAATCTGTGGCCATAGCACTGCATCACAA
TGCAGCAAATGTATTTCCCACTTTAACCGAACATGACAGAGAGGTGATTATTAGCCATGCAAGA
TGTCGGAAGTCATCAGAAATTTACATCAGAGGAATTGTAGTGGCTTGGGTTGAAGGAAAAGTAC
CCTAGCATTCCTTGCCTACATGTTGTCTCTCCCCCTCTTTAATCTTAACTTGGTACAGTCCGTT
AACAATAAAATACCCTTCTGTAACCTATAAACTGTTACTCCCCATCAGTTTGTGCTTGCAAACT
GATAGCTGACTTTTCTGATTTCCTGTGGAGCACTTCTGATTGCAGTGCTCTGCGCAGGGACCTG
CCGTGCACCCCATTTAAGAGGATGCTGCAGTCTCATTGTCTAATTGGACTCTAGTGCTTTAGTC
ATATTAGCACTTGCAGAGAGCTTGGATTTTCCCCCTTTTTCTTTCCTCTCTTTCTCTCTTCTCT
CTCTTCCTCCTCCCACCGGACTTTTCAATCCAGGCAGTTGAGGGTGGGAAGCCTTGAGCACTGG
AGCCAGCAGCACTCGCCCCACTAGAAGGGTAGGGAAAGCTGCAGTGACTGACGGATCAGATCAC
CGGCTGCAACTCCTCGCATTTTTGAGAGCAGCAGGGCTTCCTGAAGAATGAGAAAGATAATGCC
TTGCTGTCTGCTATCGAAGAGTCCCGGAAGAGGACCTTTGGCATGGCTGAGGAGTATCATCGAG
AGTCAATGCTGGTCGAGTGGGAACAGGTGAAACAAAGAATTCTGCATACGCTGCTGGCATCAGG
GGAGGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGTTACGTCAGCGATGTGAGTCCTCCT
GGCCGAAGCTCTCTGGATAGCATTGAGATGGCCTATGCCCGGCAGATCTACATCTATAATGAGA
AGATCGTGAGTGGACACCTACAGCCCAACCTGGTGGACCTGTGTGCCTCTGTCGCAGAGCTGGA
TGACAAGAGCATTTCTGACATGTGGGCCATGGTAAAACAAATGACAGATGTGGTCCTGACACCG
GCAACTGACGCCCTGAAGAGCCGAAGCAGTGTGGAAGTGCGCATGGATTTTGTCAAGCAGGCCT
TGGGATACCTTGAGCAGAGTTATAAAAATTACACCCTTGTGACTGTCTTTGGAAACCTGCATCA
GGCACAGCTGGGCGGTGTGCCTGGGACTTACCAGCTGGTTCGCAGTTTTCTAAACATTAAGTTG
CCAGCTCCCTCACCAGGACTTCAGGATGGAGAGGTAGAAGGCCATCCGGTCTGGGCGTTAATTT
ATTACTGCATGCGCTGTGGAGACCTGCTTGCTGCATCACAAGTCGTCAGTCGAGCCCAGCACCA
GCTGGGGGAATTTAAAACCTGGTTCCAGGAATACATGAACAGCAAGGATAGAAGATTGTCTCCA
GCTACTGAGAACAAACTCCGGCTTCACTACCGCAGAGCCCTCAGGAACAACACAGACCCCTACA
AGCGAGCTGTGTACTGTATCATTGGGAGATGCGACATCACCGACAACCAGAGCGAAGTAGCAGA
CAAGACCGAGGACTACCTGTGGTTAAAACTGAACCAGGTGTGTTTCGATGATGACGGCACCAGC
TCGCCACAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAGCTGCTAGAGGACTATGGCGAGT
CCCACTTCACGGTGAACCAGCAGCCCTTCCTCTACTTCCAAGTGCTGTTCCTGACTGCACAGTT
TGAAGCTGCCATTGCCTTTCTCTTCCGCATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGCC
CTGGTGCTGTTTGAGCTAAAGCTGCTTTTAAAGTCCTCCGGGCAGAGTGCTCAGCTCCTCAGCC
ACGAGCCTGGTGACCCTCCCTGCATGCGACGGCTGAACTTTGTGCGTCTACTCATGCTCTACAC
CCGCAAGTTTGAGTCCACGGACCCAAGAGAAGCCCTGCAGTACTTTTACTTCCTCAGGGATGAG
AAAGACAGTCAAGGAGAAAACATGTTTCTGCGCTGTGTGAGTGAGCTTGTGATAGAAAGTCGAG
AGTTTGATATGATTCTTGGGAAGCTAGAGAATGACGGAAGTAGAAAGCCTGGAGTCATAGATAA
GTTTACCAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCCGTGGCAGAAAATAAAGGACTA
TTTGAAGAAGCAGCCAAGCTTTATGACCTTGCCAAGAATGCGGACAAGGTGCTGGAGCTGATGA
ACAAGCTGCTAAGCCCTGTGGTCCCACAGATCAGCGCCCCACAGTCTAACAAGGAAAGGCTGAA
GAACATGGCCCTCTCCATTGCAGAGCGGTACAGGGCTCAGGGAATAAGTGCAAATAAGTTTGTG
GACTCTACGTTCTATCTCCTCTTGGACCTGATCACCTTTTTTGACGAATATCACAGTGGTCATA
TTGACAGAGCCTTCGATATTATCGACCGCTTGAAGCTGGTGCCTCTGAATCAGGAAAGTATGGA
AGAAAGGGTGGCTGCCTTCAGAAACTTCAGTGACGAAATCAGGCACAACCTCTCGGAAGTTCTT
CTCGCCACCATGAACATCCTGTTCACACAGTTTAAGAGGCTCAAGGGAACAAGCCCATCTTCAG
CAACCAGGCCCCAGCGAGTCATCGAAGACCGTGACTCTCAACTCCGAAGTCAAGCCAGAGCCCT
GATTACCTTTGCTGGGATGATACCGTACCGGACGTCTGGGGACACTAATGCCAGGCTGGTGCAG
ATGGAGGTCCTGATGAATTAAGCGCTGTGTGATGGGGTCTGAGGTTGCACAGTCTATTAGGCAT
GTGGCCAGCTGGTGTGGGTTTCCAGTTCCGTTTCTGTTGTGTTGTGTTTTGTTTTTTGTATTAT
GTATTTTTGTCAATACCAATAAATTTCTTTGATTTATATTTCTTTTAAAAA

hide sequence

RefSeq Acc Id:

XM_063277858 ⟹ XP_063133928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,690,154 - 10,789,252 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011925	(Get FASTA)	NCBI Sequence Viewer
	XP_008770504	(Get FASTA)	NCBI Sequence Viewer
	XP_063133928	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81925	(Get FASTA)	NCBI Sequence Viewer
	EDL87348	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025086
	ENSRNOP00000025086.5
GenBank Protein	Q66HC5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011925 ⟸ NM_001011925

- UniProtKB:

Q66HC5 (UniProtKB/Swiss-Prot), A6JY70 (UniProtKB/TrEMBL), A6JY69 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLL
GSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEY
HRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYVSDVSPPGRSSLDSIEMAYARQIYIY
NEKIVSGHLQPNLVDLCASVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVK
QALGYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWA
LIYYCMRCGDLLAASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTD
PYKRAVYCIIGRCDITDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDY
GESHFTVNQQPFLYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQL
LSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIE
SREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLE
LMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHS
GHIDRAFDIIDRLKLVPLNQESMEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSP
SSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN

hide sequence

RefSeq Acc Id:	XP_008770504 ⟸ XM_008772282
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5YC20 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYVSDVSPPGRSSLDSIEMAYAR QIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVR MDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEG HPVWALIYYCMRCGDLLAASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRAL RNNTDPYKRAVYCIIGRCDITDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQ LLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSG QSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVS ELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNA DKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFF DEYHSGHIDRAFDIIDRLKLVPLNQESMEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRL KGTSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN hide sequence

Ensembl Acc Id:

ENSRNOP00000025086 ⟸ ENSRNOT00000025086

Ensembl Acc Id:

ENSRNOP00000083330 ⟸ ENSRNOT00000096162

Ensembl Acc Id:

ENSRNOP00000094077 ⟸ ENSRNOT00000108218

Ensembl Acc Id:

ENSRNOP00000077823 ⟸ ENSRNOT00000116116

RefSeq Acc Id:	XP_063133928 ⟸ XM_063277858
- Peptide Label:	isoform X1
- UniProtKB:	Q66HC5 (UniProtKB/Swiss-Prot), A6JY70 (UniProtKB/TrEMBL), A6JY69 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HC5-F1-model_v2	AlphaFold	Q66HC5	1-819	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700948

Promoter ID:

EPDNEW_R11472

Type:

initiation region

Name:

Nup93_1

Description:

nucleoporin 93

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	11,263,982 - 11,264,042	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311525	AgrOrtholog
BioCyc Gene	G2FUF-6478	BioCyc
Ensembl Genes	ENSRNOG00000018564	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025086	ENTREZGENE
	ENSRNOT00000025086.7	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7113037	IMAGE-MGC_LOAD
InterPro	Nucleoporin_int_Nup93/Nic96	UniProtKB/Swiss-Prot
KEGG Report	rno:291874	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93917	IMAGE-MGC_LOAD
NCBI Gene	291874	ENTREZGENE
PANTHER	NUCLEAR PORE COMPLEX PROTEIN NUP93	UniProtKB/Swiss-Prot
	PTHR11225	UniProtKB/Swiss-Prot
Pfam	Nic96	UniProtKB/Swiss-Prot
PhenoGen	Nup93	PhenoGen
RatGTEx	ENSRNOG00000018564	RatGTEx
UniProt	A0A8I5YC20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZ34_RAT	UniProtKB/TrEMBL
	A0A8I6AH00_RAT	UniProtKB/TrEMBL
	A6JY69	ENTREZGENE, UniProtKB/TrEMBL
	A6JY70	ENTREZGENE, UniProtKB/TrEMBL
	NUP93_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-10-22	Nup93	nucleoporin 93	Nup93	nucleoporin 93kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Nup93	nucleoporin 93kDa	Nup93	nucleoporin 93	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Nup93	nucleoporin 93	Nup93_predicted	nucleoporin 93 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Nup93_predicted	nucleoporin 93 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)