Rmp64 (ribonuclease MRP subunit p64) - Rat Genome Database

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Gene: Rmp64 (ribonuclease MRP subunit p64) Rattus norvegicus
Analyze
Symbol: Rmp64 (Ensembl: Nepro)
Name: ribonuclease MRP subunit p64 (Ensembl:nucleolus and neural progenitor protein)
RGD ID: 1311458
Description: Predicted to be involved in positive regulation of Notch signaling pathway. Predicted to act upstream of or within negative regulation of neuron differentiation. Predicted to be located in nucleolus. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in anauxetic dysplasia 3. Orthologous to human NEPRO (nucleolus and neural progenitor protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC303948; hypothetical protein MGC27931; LOC303948; MGC95106; Nepro; nucleolus and neural progenitor protein; RGD1311458; similar to cDNA sequence BC027231; hypothetical protein MGC27931; uncharacterized protein C3orf17 homolog; uncharacterized protein LOC303948
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,464,263 - 69,476,429 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1169,464,265 - 69,509,978 (-)EnsemblGRCr8
mRatBN7.21155,958,265 - 55,970,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,958,267 - 55,970,432 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1164,771,935 - 64,784,100 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,433,786 - 57,445,951 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,504,113 - 56,516,278 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,919,477 - 60,931,642 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,919,453 - 60,931,794 (-)Ensemblrn6Rnor6.0
Rnor_5.01165,032,119 - 65,044,284 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41157,497,040 - 57,509,205 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1155,521,866 - 55,534,031 (-)NCBICelera
RGSC_v3.11157,554,630 - 57,566,794 (-)NCBI
Cytogenetic Map11q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19906856   PMID:26178919  


Genomics

Comparative Map Data
Rmp64
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,464,263 - 69,476,429 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1169,464,265 - 69,509,978 (-)EnsemblGRCr8
mRatBN7.21155,958,265 - 55,970,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,958,267 - 55,970,432 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1164,771,935 - 64,784,100 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,433,786 - 57,445,951 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,504,113 - 56,516,278 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,919,477 - 60,931,642 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,919,453 - 60,931,794 (-)Ensemblrn6Rnor6.0
Rnor_5.01165,032,119 - 65,044,284 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41157,497,040 - 57,509,205 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1155,521,866 - 55,534,031 (-)NCBICelera
RGSC_v3.11157,554,630 - 57,566,794 (-)NCBI
Cytogenetic Map11q21NCBI
RMP64
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,002,444 - 113,019,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,002,444 - 113,019,861 (-)Ensemblhg38GRCh38
GRCh373112,721,291 - 112,738,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,203,981 - 114,221,245 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343114,206,457 - 114,221,203NCBI
Celera3111,129,629 - 111,146,889 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,104,836 - 110,122,102 (-)NCBIHuRef
CHM1_13112,684,833 - 112,702,093 (-)NCBICHM1_1
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBIT2T-CHM13v2.0
Nepro
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,544,645 - 44,559,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,544,664 - 44,557,647 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381644,724,301 - 44,738,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,724,301 - 44,737,284 (+)Ensemblmm10GRCm38
MGSCv371644,724,412 - 44,737,245 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361644,643,631 - 44,656,464 (+)NCBIMGSCv36mm8
Celera1645,084,903 - 45,097,735 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1629.04NCBI
Rmp64
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,233,970 - 13,248,013 (-)Ensembl
ChiLan1.0NW_00495542713,232,375 - 13,247,164 (-)NCBIChiLan1.0ChiLan1.0
RMP64
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,005,032 - 111,022,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,009,807 - 111,027,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,152,415 - 110,169,736 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,076,649 - 117,094,041 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,076,649 - 117,094,041 (-)EnsemblpanPan2panpan1.1
NEPRO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,392,962 - 17,406,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,393,154 - 17,406,338 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3317,495,837 - 17,509,832 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03317,636,958 - 17,650,956 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3317,636,674 - 17,650,864 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,441,302 - 17,455,110 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,488,757 - 17,502,761 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,038,410 - 18,052,222 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rmp64
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,866,719 - 136,881,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936536638,961 - 655,159 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936536641,085 - 655,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEPRO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13146,902,041 - 146,915,162 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113146,902,010 - 146,914,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213156,503,350 - 156,514,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RMP64
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12267,817,433 - 67,833,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2267,817,386 - 67,832,257 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604198,645,396 - 98,663,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rmp64
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473135,514,769 - 35,528,659 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473135,514,696 - 35,528,822 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rmp64
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1429,590,050 - 29,602,121 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rmp64
93 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:32
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000018473
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018473   ⟹   ENSRNOP00000018474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1169,464,265 - 69,509,978 (-)Ensembl
mRatBN7.2 Ensembl1155,958,267 - 55,970,432 (-)Ensembl
Rnor_6.0 Ensembl1160,919,453 - 60,931,794 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109171   ⟹   ENSRNOP00000076577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1169,464,265 - 69,475,967 (-)Ensembl
mRatBN7.2 Ensembl1155,958,267 - 55,968,372 (-)Ensembl
RefSeq Acc Id: NM_001009678   ⟹   NP_001009678
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81169,464,263 - 69,476,429 (-)NCBI
mRatBN7.21155,958,265 - 55,970,432 (-)NCBI
Rnor_6.01160,919,477 - 60,931,642 (-)NCBI
Rnor_5.01165,032,119 - 65,044,284 (-)NCBI
RGSC_v3.41157,497,040 - 57,509,205 (-)RGD
Celera1155,521,866 - 55,534,031 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001009678 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88456 (Get FASTA)   NCBI Sequence Viewer  
  EDM11154 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018474
  ENSRNOP00000018474.6
  ENSRNOP00000076577.2
RefSeq Acc Id: NP_001009678   ⟸   NM_001009678
- UniProtKB: Q5I0D2 (UniProtKB/TrEMBL),   A6IR01 (UniProtKB/TrEMBL),   A0A8I5XV66 (UniProtKB/TrEMBL),   F7F501 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018474   ⟸   ENSRNOT00000018473
Ensembl Acc Id: ENSRNOP00000076577   ⟸   ENSRNOT00000109171
Protein Domains
Nucleolus and neural progenitor protein-like N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0D2-F1-model_v2 AlphaFold Q5I0D2 1-566 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311458 AgrOrtholog
BioCyc Gene G2FUF-21355 BioCyc
Ensembl Genes ENSRNOG00000013721 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018473 ENTREZGENE
  ENSRNOT00000018473.8 UniProtKB/TrEMBL
  ENSRNOT00000109171.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7127273 IMAGE-MGC_LOAD
InterPro DUF4477 UniProtKB/TrEMBL
  Nepro-associated UniProtKB/TrEMBL
KEGG Report rno:303948 UniProtKB/TrEMBL
MGC_CLONE MGC:95106 IMAGE-MGC_LOAD
NCBI Gene 303948 ENTREZGENE
PANTHER NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/TrEMBL
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/TrEMBL
Pfam DUF4477 UniProtKB/TrEMBL
PhenoGen Rmp64 PhenoGen
RatGTEx ENSRNOG00000013721 RatGTEx
UniProt A0A8I5XV66 ENTREZGENE, UniProtKB/TrEMBL
  A0ABZ3NNB6_RAT UniProtKB/TrEMBL
  A6IR01 ENTREZGENE, UniProtKB/TrEMBL
  F7F501 ENTREZGENE, UniProtKB/TrEMBL
  Q5I0D2 ENTREZGENE
UniProt Secondary Q5I0D2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Rmp64  ribonuclease MRP subunit p64  Nepro  nucleolus and neural progenitor protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-10-28 Nepro  nucleolus and neural progenitor protein  RGD1311458  similar to cDNA sequence BC027231; hypothetical protein MGC27931  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311458  similar to cDNA sequence BC027231; hypothetical protein MGC27931  RGD1311458_predicted  similar to cDNA sequence BC027231; hypothetical protein MGC27931 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311458_predicted  similar to cDNA sequence BC027231; hypothetical protein MGC27931 (predicted)  LOC303948_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303948_predicted  similar to cDNA sequence BC027231; hypothetical protein MGC27931 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL