Cops8 (COP9 signalosome subunit 8) - Rat Genome Database

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Gene: Cops8 (COP9 signalosome subunit 8) Rattus norvegicus
Analyze
Symbol: Cops8
Name: COP9 signalosome subunit 8
RGD ID: 1311404
Description: Predicted to be involved in negative regulation of cell population proliferation and protein deneddylation. Predicted to be located in nucleus and perinuclear region of cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: COP9 (constitutive photomorphogenic) homolog, subunit 8; COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana); COP9 constitutive photomorphogenic homolog subunit 8; COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis); COP9 homolog; COP9 signalosome complex subunit 8; JAB1-containing signalosome subunit 8; LOC363283; SGN8; signalosome subunit 8
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8998,655,031 - 98,664,861 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl998,654,870 - 98,665,381 (+)EnsemblGRCr8
mRatBN7.2991,207,427 - 91,217,258 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,207,395 - 91,217,258 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx999,633,896 - 99,643,726 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09104,769,782 - 104,779,613 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,135,361 - 103,145,192 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0997,772,224 - 97,782,055 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl997,772,184 - 97,782,067 (+)Ensemblrn6Rnor6.0
Rnor_5.0997,453,705 - 97,463,536 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4989,802,461 - 89,812,293 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera988,751,960 - 88,761,790 (+)NCBICelera
RGSC_v3.1990,007,229 - 90,017,062 (+)NCBI
Cytogenetic Map9q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
COP9 signalosome  (IBA,IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
perinuclear region of cytoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9535219   PMID:9707402   PMID:14636993   PMID:15489334   PMID:18850735   PMID:19056867   PMID:19141280   PMID:22992343   PMID:23376485   PMID:23689509  


Genomics

Comparative Map Data
Cops8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8998,655,031 - 98,664,861 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl998,654,870 - 98,665,381 (+)EnsemblGRCr8
mRatBN7.2991,207,427 - 91,217,258 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,207,395 - 91,217,258 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx999,633,896 - 99,643,726 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09104,769,782 - 104,779,613 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,135,361 - 103,145,192 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0997,772,224 - 97,782,055 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl997,772,184 - 97,782,067 (+)Ensemblrn6Rnor6.0
Rnor_5.0997,453,705 - 97,463,536 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4989,802,461 - 89,812,293 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera988,751,960 - 88,761,790 (+)NCBICelera
RGSC_v3.1990,007,229 - 90,017,062 (+)NCBI
Cytogenetic Map9q36NCBI
COPS8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,085,889 - 237,100,474 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,085,882 - 237,100,474 (+)Ensemblhg38GRCh38
GRCh372237,994,532 - 238,009,117 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,658,823 - 237,672,228 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2231,707,494 - 231,720,899 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2229,786,783 - 229,800,188 (+)NCBIHuRef
CHM1_12238,000,165 - 238,013,570 (+)NCBICHM1_1
T2T-CHM13v2.02237,576,980 - 237,591,573 (+)NCBIT2T-CHM13v2.0
Cops8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39190,531,147 - 90,541,063 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl190,530,703 - 90,541,063 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38190,602,960 - 90,613,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl190,602,981 - 90,613,341 (+)Ensemblmm10GRCm38
MGSCv37192,500,000 - 92,509,916 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36192,433,385 - 92,443,499 (+)NCBIMGSCv36mm8
Celera193,547,395 - 93,557,311 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map145.53NCBI
Cops8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555423,128,194 - 3,140,232 (-)Ensembl
ChiLan1.0NW_0049555423,129,184 - 3,140,232 (-)NCBIChiLan1.0ChiLan1.0
COPS8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213139,714,290 - 139,727,740 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B139,723,752 - 139,742,707 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B124,315,423 - 124,328,830 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B243,168,836 - 243,182,937 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B243,169,322 - 243,182,937 (+)EnsemblpanPan2panpan1.1
COPS8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12547,783,241 - 47,796,806 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2548,282,068 - 48,295,660 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02548,132,414 - 48,146,025 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2548,132,431 - 48,146,172 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12548,045,560 - 48,059,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02547,833,252 - 47,846,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02548,065,106 - 48,078,718 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cops8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303189,759,148 - 189,770,708 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365251,166,946 - 1,180,838 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365251,168,995 - 1,180,763 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPS8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15136,828,217 - 136,838,053 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115136,828,222 - 136,838,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,269,694 - 151,279,487 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPS8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,075,589 - 123,089,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604076,305,259 - 76,318,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cops8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248472,609,743 - 2,620,789 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248472,609,760 - 2,620,804 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cops8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14162,616,064 - 162,625,875 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cops8
89 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:98
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000026581
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat

Markers in Region
RH129868  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,216,964 - 91,217,184 (+)MAPPERmRatBN7.2
Rnor_6.0997,781,762 - 97,781,981NCBIRnor6.0
Rnor_5.0997,463,243 - 97,463,462UniSTSRnor5.0
RGSC_v3.4989,812,000 - 89,812,219UniSTSRGSC3.4
Celera988,761,497 - 88,761,716UniSTS
Cytogenetic Map9q35UniSTS
RH129931  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,217,003 - 91,217,184 (+)MAPPERmRatBN7.2
Rnor_6.0997,781,801 - 97,781,981NCBIRnor6.0
Rnor_5.0997,463,282 - 97,463,462UniSTSRnor5.0
RGSC_v3.4989,812,039 - 89,812,219UniSTSRGSC3.4
Celera988,761,536 - 88,761,716UniSTS
Cytogenetic Map9q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026581   ⟹   ENSRNOP00000026581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl998,655,019 - 98,665,001 (+)Ensembl
mRatBN7.2 Ensembl991,207,395 - 91,217,258 (+)Ensembl
Rnor_6.0 Ensembl997,772,184 - 97,782,067 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106176   ⟹   ENSRNOP00000095164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl998,654,870 - 98,665,381 (+)Ensembl
mRatBN7.2 Ensembl991,207,426 - 91,217,239 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118635   ⟹   ENSRNOP00000084229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl998,655,019 - 98,665,381 (+)Ensembl
mRatBN7.2 Ensembl991,207,426 - 91,217,239 (+)Ensembl
RefSeq Acc Id: NM_001013227   ⟹   NP_001013245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,655,031 - 98,664,861 (+)NCBI
mRatBN7.2991,207,427 - 91,217,258 (+)NCBI
Rnor_6.0997,772,224 - 97,782,055 (+)NCBI
Rnor_5.0997,453,705 - 97,463,536 (+)NCBI
RGSC_v3.4989,802,461 - 89,812,293 (+)RGD
Celera988,751,960 - 88,761,790 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013245 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH63182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095164
  ENSRNOP00000095164.1
GenBank Protein Q6P4Z9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013245   ⟸   NM_001013227
- UniProtKB: Q6P4Z9 (UniProtKB/Swiss-Prot),   A0A8L2UKC2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026581   ⟸   ENSRNOT00000026581
Ensembl Acc Id: ENSRNOP00000084229   ⟸   ENSRNOT00000118635
Ensembl Acc Id: ENSRNOP00000095164   ⟸   ENSRNOT00000106176
Protein Domains
PCI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P4Z9-F1-model_v2 AlphaFold Q6P4Z9 1-209 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696850
Promoter ID:EPDNEW_R7374
Type:initiation region
Name:Cops8_1
Description:COP9 signalosome subunit 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0997,772,224 - 97,772,284EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311404 AgrOrtholog
BioCyc Gene G2FUF-26735 BioCyc
Ensembl Genes ENSRNOG00000019635 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000106176 ENTREZGENE
  ENSRNOT00000106176.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.990 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887869 IMAGE-MGC_LOAD
InterPro COP9_CSN8 UniProtKB/Swiss-Prot
  CSN8_PSD8_EIF3K UniProtKB/Swiss-Prot
  PCI_dom UniProtKB/Swiss-Prot
KEGG Report rno:363283 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72985 IMAGE-MGC_LOAD
NCBI Gene 363283 ENTREZGENE
PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 8 UniProtKB/Swiss-Prot
  PTHR13339 UniProtKB/Swiss-Prot
Pfam CSN8_PSD8_EIF3K UniProtKB/Swiss-Prot
PhenoGen Cops8 PhenoGen
PROSITE PCI UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019635 RatGTEx
UniProt A0A8I5ZZ15_RAT UniProtKB/TrEMBL
  A0A8L2UKC2 ENTREZGENE, UniProtKB/TrEMBL
  CSN8_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-20 Cops8  COP9 signalosome subunit 8  Cops8  COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Cops8  COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)  Cops8  COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cops8  COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)  Cops8_predicted  COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cops8_predicted  COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) (predicted)      Symbol and Name status set to approved 70820 APPROVED