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Gene: Lin54 (lin-54 DREAM MuvB core complex component) Rattus norvegicus

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Symbol:

Lin54

Name:

lin-54 DREAM MuvB core complex component

RGD ID:

1311361

Description:

Predicted to enable minor groove of adenine-thymine-rich DNA binding activity and transcription regulatory region nucleic acid binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within nucleosome organization. Predicted to be part of RNA polymerase II transcription repressor complex. Predicted to be active in nucleus. Orthologous to human LIN54 (lin-54 DREAM MuvB core complex component); INTERACTS WITH bisphenol A; cadmium dichloride; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

lin-54 homolog (C. elegans); LOC305171; protein lin-54 homolog; RGD1311361; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIN54 (lin-54 DREAM MuvB core complex component)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lin54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lin54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIN54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIN54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lin54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIN54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIN54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lin54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lin54 (lin-54 DREAM MuvB core complex component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Lin54 (lin-54 DREAM MuvB core complex component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LIN54 (lin-54 DREAM MuvB core complex component)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lin54 (lin-54 DREAM MuvB core complex component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lin54 (lin-54 DREAM MuvB core complex component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-54	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-54	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mip120	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mip120	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lin54	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	9,434,093 - 9,514,091 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	9,434,112 - 9,492,106 (+)	Ensembl				GRCr8
mRatBN7.2	14	9,129,775 - 9,188,244 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	9,130,336 - 9,187,790 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	9,117,967 - 9,159,651 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	10,417,843 - 10,459,523 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	9,114,446 - 9,156,126 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	10,770,072 - 10,828,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	10,786,399 - 10,828,106 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	10,398,080 - 10,439,960 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	9,254,128 - 9,295,581 (+)	NCBI		Celera
RGSC_v3.1	14	10,383,795 - 10,439,950 (+)	NCBI
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

caffeine (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dimethyl sulfoxide (ISO)

doxorubicin (ISO)

endosulfan (EXP)

flutamide (EXP)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

resorcinol (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

nucleosome organization (ISO)

regulation of DNA-templated transcription (IBA)

Cellular Component

nucleus (IBA,IEA)

RNA polymerase II transcription repressor complex (IEA,ISO)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

minor groove of adenine-thymine-rich DNA binding (IEA,ISO)

protein binding (ISO)

transcription regulatory region nucleic acid binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Lin54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	9,434,093 - 9,514,091 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	9,434,112 - 9,492,106 (+)	Ensembl				GRCr8
mRatBN7.2	14	9,129,775 - 9,188,244 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	9,130,336 - 9,187,790 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	9,117,967 - 9,159,651 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	10,417,843 - 10,459,523 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	9,114,446 - 9,156,126 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	10,770,072 - 10,828,115 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	10,786,399 - 10,828,106 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	10,398,080 - 10,439,960 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	9,254,128 - 9,295,581 (+)	NCBI		Celera
RGSC_v3.1	14	10,383,795 - 10,439,950 (+)	NCBI
Cytogenetic Map	14	p22	NCBI

LIN54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	82,924,603 - 83,012,941 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	82,909,973 - 83,012,983 (-)	Ensembl			hg38	GRCh38
GRCh37	4	83,845,756 - 83,934,094 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	84,065,151 - 84,151,006 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	81,136,312 - 81,224,592 (-)	NCBI		Celera
Cytogenetic Map	4	q21.22	NCBI
HuRef	4	79,586,333 - 79,674,722 (-)	NCBI		HuRef
CHM1_1	4	83,822,194 - 83,910,549 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	86,253,801 - 86,342,186 (-)	NCBI		T2T-CHM13v2.0

Lin54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	100,589,892 - 100,648,506 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	100,589,900 - 100,648,493 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	100,442,033 - 100,500,639 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	100,441,918 - 100,500,639 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	100,871,052 - 100,929,658 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	100,682,502 - 100,740,941 (-)	NCBI		MGSCv36	mm8
Celera	5	97,767,830 - 97,826,649 (-)	NCBI		Celera
Cytogenetic Map	5	E4	NCBI
cM Map	5	48.48	NCBI

Lin54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955474	6,613,661 - 6,660,899 (+)	Ensembl
ChiLan1.0	NW_004955474	6,600,766 - 6,660,904 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIN54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	47,060,208 - 47,146,279 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	47,249,393 - 47,335,806 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	41,192,653 - 41,278,730 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	47,045,043 - 47,131,091 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	47,046,277 - 47,131,091 (+)	Ensembl			panPan2	panpan1.1

LIN54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	6,876,111 - 6,940,754 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	6,878,187 - 6,941,268 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	34,943,820 - 35,009,627 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	6,896,796 - 6,962,825 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	6,896,805 - 6,960,655 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	6,967,885 - 7,033,859 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	6,836,618 - 6,902,413 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	33,063,699 - 33,129,725 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lin54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	5,405,363 - 5,481,497 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936738	1,568,585 - 1,643,454 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936738	1,568,786 - 1,643,500 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIN54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	135,330,919 - 135,398,263 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	135,330,868 - 135,398,274 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	144,625,750 - 144,693,415 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIN54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	31,323,792 - 31,406,194 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	31,326,174 - 31,404,045 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	9,893,341 - 9,984,470 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lin54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624900	12,174 - 66,648 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624900	12,511 - 66,582 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lin54
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	10,663,432 - 10,720,064 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lin54
667 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	670
Count of miRNA genes:	298
Interacting mature miRNAs:	381
Transcripts:	ENSRNOT00000003006
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3957878	21572472	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	3957878	18558812	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3957878	31121464	Rat
71115	Niddm15	Non-insulin dependent diabetes mellitus QTL 15	4.8		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	11334906	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	17877928	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3957878	24886169	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat

Markers in Region

D16S2625

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	9,180,365 - 9,180,793 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	10,820,681 - 10,821,108	NCBI	Rnor6.0
Rnor_5.0	14	10,768,276 - 10,768,703	UniSTS	Rnor5.0
RGSC_v3.4	14	10,432,526 - 10,432,953	UniSTS	RGSC3.4
Celera	14	9,288,147 - 9,288,574	UniSTS
Cytogenetic Map	14	p22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV774847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003006 ⟹ ENSRNOP00000003006

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	9,435,671 - 9,492,106 (+)	Ensembl
mRatBN7.2 Ensembl	14	9,131,433 - 9,187,790 (+)	Ensembl
Rnor_6.0 Ensembl	14	10,786,399 - 10,828,106 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102075 ⟹ ENSRNOP00000096414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	9,436,069 - 9,492,105 (+)	Ensembl
mRatBN7.2 Ensembl	14	9,146,146 - 9,187,790 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106801 ⟹ ENSRNOP00000076578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	9,434,112 - 9,492,106 (+)	Ensembl
mRatBN7.2 Ensembl	14	9,130,336 - 9,187,790 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109020 ⟹ ENSRNOP00000093056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	9,436,069 - 9,492,105 (+)	Ensembl
mRatBN7.2 Ensembl	14	9,146,114 - 9,187,790 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119980 ⟹ ENSRNOP00000083208

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	9,434,722 - 9,490,417 (+)	Ensembl
mRatBN7.2 Ensembl	14	9,131,799 - 9,187,790 (+)	Ensembl

RefSeq Acc Id:

NM_001100564 ⟹ NP_001094034

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,450,431 - 9,492,115 (+)	NCBI
mRatBN7.2	14	9,146,114 - 9,187,799 (+)	NCBI
Rnor_6.0	14	10,786,399 - 10,828,115 (+)	NCBI
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI
RGSC_v3.4	14	10,398,080 - 10,439,960 (+)	RGD
Celera	14	9,254,128 - 9,295,581 (+)	RGD

Sequence:

show sequence

CACCTGGGCATCCTTCCAGAAGCAGTGCGACCATGGAGGTGGTGCCGGCCGAGGTGAATAGCTT
GCTTCCAGACGACATAATGGACACTGCTATTACTTTAGTGGATGAGGATAGCATTGAGGCTGTA
ATTGTGTCATCCCCAATTCCCATGGAGACAGAACTGGAAGAAATTGTCAGCATAAATTCTACTG
GTGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTGTACAGTAATCACACTAACCA
AGTTGCAGTGAATACCACAGTTTCTAAAGCAGACTCCAATACCACAGTGAAACCAGCATTTCCG
AGTGGCCTTCAAAAGCTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTTAA
ACAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAA
GTTAATCTTAACAACTTTGGGCAAGTCTGGCTCACCAATTGTTTTAGCACTTCCCCATAGCCAA
CTACCCCAGGCTCAGAAAGTTACAGCTCAGGCCCAACCAGGAGACGCTAAGTTACCACCGCAGC
AGATCAAAGTAGTTACCATTGGAGGGAGGCCAGAGGTGAAACCTGCCATTGGGGTCTCAGCACT
GACCCCAGGAAGTCAACTGATTAATACCACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTA
AAAACAGTGCAGATTGCTAAGAAGCCTCGAACACCAACCTCGGGTCCAGTGATCACGAAGCTGA
TTTTTGCAAAACCAATTAATAGTAAAGCAGTTACGGGACAGACAACTCAAGCGTCTCCACCCGT
CGTCACAGGCAGGGTTCTTTCACAGTCTGCTCCTGGAACTCCATCCAAGACTATAACAATATCA
GAAAGTGGTGTTATTGGCTCAACTTTAAATTCTACAACACAGACACCAAATAAGATAGCCATCT
CACCTTTGAAGTCACCAAATAAGACAGTGAAGTCGGCTGTGCAGACCATCACGGTGGGCGGAAT
GAGCACGTCGCAGTTTAAGACCATCATTCCCCTGGCAGCTGCTCCCAATGTCCAGCCCATTCAA
GTGCCTGGAAGCAAGTTTCATTATGTCCGACTCGTCACTGCCACAACCGCCGGTAGCTCAGCCC
CACCAGTCAGTCAGAGTCCCAGTGTCAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTTGT
TAATACCACGCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTT
CCAAAACCAATCAATTCAACTTCACAAATTGTAACTACTAGCCAGCCCCAGCAACGGCTCATCA
TGCCGGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCGCCAGGCACTGTGTT
GGCGCCAGCTCCAGGAACGGGGAACGTGGGCTACGCAGTGCTTCCGGCTCAGTACGTCACTCAG
TTGCAGCAGTCCTCCTACGTGTCGATAGCAGGCAACTCTAACTTCACCGGGACATCGGGCATCC
AGACACAGGCAAGGGTTTCATTCAACGGCATAATTCCATCAGAGTCTGCCAGTCGGCCCAGAAA
ACCCTGTAACTGTACAAAATCACTGTGTTTGAAATTATACTGTGACTGCTTTGCCAATGGTGAA
TTCTGCAACAACTGCAATTGTACCAATTGTTACAACAACTTAGAGCATGAGAATGAGCGACAAA
AGGCAATAAAGGCATGCCTTGACAGAAACCCGGAAGCCTTCAAGCCAAAGATAGGAAAAGGAAA
AGAGGGGGAGTCGGATCGGCGGCACAGCAAAGGCTGTAACTGCAAACGGTCAGGGTGTCTTAAA
AACTACTGCGAGTGCTATGAGGCAAAAATCATGTGCTCCTCCATATGCAAGTGCATCGGCTGTA
AGAACTTCGAAGAAAGCCCAGAACGGAAGACATTGATGCACTTAGCAGATGCGGCTGAAGTAAG
GGTCCAGCAGCAGACAGCAGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTGCTTACCAGG
CCCACCCCCGCTCTGAACAGTGGAGGAGGAAAATTGCCATTCACATTTGTAACTAAAGAAGTAG
CTGAAGCCACGTGTAACTGCCTTCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAA
GGCGGCAGCAGAGCGGATGATCCTGGAGGAGTTTGGACGGTGTTTGATGAGCGTCATCAACTCT
GCAGGAAAAGCAAAAAGTGACCCCTGTGCCATGCACTGCTAACTGTTGCACAAAAGACTGAATG
GAACTGTACAGGAAATTTAAGGTGCCGGGACACTTGATTTTCTAGAAGATAGTTTAACAATTAC
TGTATTTTAATTCAGCCTTTGTTTTAAGAGATCTGAAACTATAATATTGAAAGAGAAGAAATTT
TAAATGAAGAAATTAGTACATTTTAAATCTTAGTTAATTCTGCCTATGCCCCTTCTAAATTTTT
TTCTTTAAAAATTTTTCTTTTATTGTATTTTATATTTTTTAATTTGCTTGGGTTTCTTAAGAAT
TAGATGTTCTGTCCTGATTCTATTGACAAAGAACATTCATAAATTATTGTAATATCATTTATAA
TATATGGTGTTGTATGACTTTGTTCAGTAGAAAAGGCCAAAGTACCATGGGTATTACCCAGTCT
TTGGCTACAGATCCAGAATATTCACAGGTAGGATGTCCACATAACCAGATTCTTAATGAAACAT
ATTTAGAAGATATTTTGTTTAGAAAAACACCTTCTTTAAAGAAAATTAGCTTTTTAGAGTGGAT
TCTGGAATGTTCTCTCTTGTCTCTTTGGGAATATCAGAAGGGGAAACAATCCCCATCACACTTT
TCAGATATAAACATTGTATTTAAAGAAAGCAGAATCTTAAGGGACAGTAGTTGTTAGCGTATGG
GCTGTCTCTGAGGAGGAGGAATGGCTGACATGGCTCGGGGCGTCTTCATTTTCTCTGAAGGAGA
TGGTATGTTCATAATAATTGTTAAAGTGATTATGGCTAATTACTAAAATAAGAGACTGTGTGAA
TTGAAGTAACATTTTGTGTCATGATATTAGAACTCATAAGCACCAAGTATAAACTGTGGCTTGG
ATGGAGAAGCGAGGACACAAAACTGAGGTTATGTATGCTGAAGCTTTTATGCACACACTTCTCT
GTAGACCTTTGAACTGAGTTTGAATCAATATGTGACTCTTACCTGGGTTACTGCAAAGGACCTC
CCAGCAGCTTCTAAAATCATAGTGAGCTTTTTATAAAGGAGTTTAATTAATGCAGCATTGTTTC
TAACCAGTGATTTGGTAAGCTGAAGCACGTGTGTTCCTGGACTCGCAAAAACAACCTAAACCTT
CCTCAGTAATTAAAACTGTATGACCTTGGGAGCCTGTTGTAATAGGACTCGAGCTTACACAAGC
AGAAAAATATGTTGGAATTGAGGCATTTTGTAAGGTACCTTAATCCTTGATAATTACTAGTGTA
TGATTATACCCTTCCTACAAGGACTCTCTAGTTGTATGTAGTAAGTATGTATATATGTTCATAT
GAACATGAACGATATAGACAATAGAAATTAACCCAAAGAGGATTCCGTTATTCCCTGGAGTGTC
CTCCATTTACCATGGTTTTATTAGATGGCAGTGCTGTGACTCTTCATGTAGATAATGCAGACAT
TCTCAGCACCTCAGTCTAGAGTGTTTGAGTCAACTCTGTATAAATGTAAATTAGTCTAAGAGGA
CAAAGGAATATCTAATCAAGTTATTTTTCAAAAGACTGCAATAAGTTTTTGGTCTAAACCTAAA
CTTTGTTCATTTTGTATATGTTATGTGTTAATTCTAATCGCACCATTGTGATGTGTATATACAG
TGTGCACAAAATGTTTGTGAATTTTTATTATATTTGTAGATTATGTATGATGGCATTGCATAAG
ATTGTTTTGCTTGTAAAAATTTGAAGGTGCAATCAAAGCTACTAGTTTTGATTTTTAAGAAGCT
TTTACCGTATCCGTCCCTTTCCTTCTGTGCGGTTCTAACTGAAGGACGTTTGTGTCAGGCATTT
GCATCAAATTGCTGAACAGCGCTAACAGCCACACGAAATCACCAACTTCTAACGATTATTTGGG
GAGGGTTCGGTCTAGAATTTTTAAGCCCTATTTACATCCCAAAGTAGAAAGATTATATTTACTA
GAGCTATTCAAAAAATACACTTTTCTATGTTGTGAAAACAGGGCAGAAGAGTAAATCATACAGA
AATAAACATTTATACTATTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250657 ⟹ XP_006250719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,434,427 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,130,444 - 9,188,242 (+)	NCBI
Rnor_6.0	14	10,770,801 - 10,828,115 (+)	NCBI
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI

Sequence:

show sequence

GCTCAGCCTCTAGCGGGCTCTCTGTAGAAACGCGCTGGAGTGGGTGGGAGACAGCCCTTGATTA
AGCCCGAGCCTGCTTGACTTTTATATGGAGTTGTCATTCAAACAAGCACCTGGGCATCCTTCCA
GAAGCAGTGCGACCATGGAGGTGGTGCCGGCCGAGGTGAATAGCTTGCTTCCAGACGACATAAT
GGACACTGCTATTACTTTAGTGGATGAGGATAGCATTGAGGCTGTAATTGTGTCATCCCCAATT
CCCATGGAGACAGAACTGGAAGAAATTGTCAGCATAAATTCTACTGGTGACTCTACAGCCACGC
CCATTTCCACGGAACCAATCACAGTGTACAGTAATCACACTAACCAAGTTGCAGTGAATACCAC
AGTTTCTAAAGCAGACTCCAATACCACAGTGAAACCAGCATTTCCGAGTGGCCTTCAAAAGCTT
GGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTTAAACAAAGTATCACAGACAT
CTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAAGTTAATCTTAACAACTTT
GGGCAAGTCTGGCTCACCAATTGTTTTAGCACTTCCCCATAGCCAACTACCCCAGGCTCAGAAA
GTTACAGCTCAGGCCCAACCAGGAGACGCTAAGTTACCACCGCAGCAGATCAAAGTAGTTACCA
TTGGAGGGAGGCCAGAGGTGAAACCTGCCATTGGGGTCTCAGCACTGACCCCAGGAAGTCAACT
GATTAATACCACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGTGCAGATTGCT
AAGAAGCCTCGAACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATTA
ATAGTAAAGCAGTTACGGGACAGACAACTCAAGCGTCTCCACCCGTCGTCACAGGCAGGGTTCT
TTCACAGTCTGCTCCTGGAACTCCATCCAAGACTATAACAATATCAGAAAGTGGTGTTATTGGC
TCAACTTTAAATTCTACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCACCAA
ATAAGACAGTGAAGTCGGCTGTGCAGACCATCACGGTGGGCGGAATGAGCACGTCGCAGTTTAA
GACCATCATTCCCCTGGCAGCTGCTCCCAATGTCCAGCCCATTCAAGTGCCTGGAAGCAAGTTT
CATTATGTCCGACTCGTCACTGCCACAACCGCCGGTAGCTCAGCCCCACCAGTCAGTCAGAGTC
CCAGTGTCAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTTGTTAATACCACGCCTGTACG
GATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTTCCAAAACCAATCAATTCA
ACTTCACAAATTGTAACTACTAGCCAGCCCCAGCAACGGCTCATCATGCCGGCCACACCACTGC
CTCAGATCCAGCCCAACCTCACTAACCTGCCGCCAGGCACTGTGTTGGCGCCAGCTCCAGGAAC
GGGGAACGTGGGCTACGCAGTGCTTCCGGCTCAGTACGTCACTCAGTTGCAGCAGTCCTCCTAC
GTGTCGATAGCAGGCAACTCTAACTTCACCGGGACATCGGGCATCCAGACACAGGCAAGGGTTT
CATTCAACGGCATAATTCCATCAGAGTCTGCCAGTCGGCCCAGAAAACCCTGTAACTGTACAAA
ATCACTGTGTTTGAAATTATACTGTGACTGCTTTGCCAATGGTGAATTCTGCAACAACTGCAAT
TGTACCAATTGTTACAACAACTTAGAGCATGAGAATGAGCGACAAAAGGCAATAAAGGCATGCC
TTGACAGAAACCCGGAAGCCTTCAAGCCAAAGATAGGAAAAGGAAAAGAGGGGGAGTCGGATCG
GCGGCACAGCAAAGGCTGTAACTGCAAACGGTCAGGGTGTCTTAAAAACTACTGCGAGTGCTAT
GAGGCAAAAATCATGTGCTCCTCCATATGCAAGTGCATCGGCTGTAAGAACTTCGAAGAAAGCC
CAGAACGGAAGACATTGATGCACTTAGCAGATGCGGCTGAAGTAAGGGTCCAGCAGCAGACAGC
AGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTGCTTACCAGGCCCACCCCCGCTCTGAAC
AGTGGAGGAGGAAAATTGCCATTCACATTTGTAACTAAAGAAGTAGCTGAAGCCACGTGTAACT
GCCTTCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAAGGCGGCAGCAGAGCGGAT
GATCCTGGAGGAGTTTGGACGGTGTTTGATGAGCGTCATCAACTCTGCAGGAAAAGCAAAAAGT
GACCCCTGTGCCATGCACTGCTAACTGTTGCACAAAAGACTGAATGGAACTGTACAGGAAATTT
AAGGTGCCGGGACACTTGATTTTCTAGAAGATAGTTTAACAATTACTGTATTTTAATTCAGCCT
TTGTTTTAAGAGATCTGAAACTATAATATTGAAAGAGAAGAAATTTTAAATGAAGAAATTAGTA
CATTTTAAATCTTAGTTAATTCTGCCTATGCCCCTTCTAAATTTTTTTCTTTAAAAATTTTTCT
TTTATTGTATTTTATATTTTTTAATTTGCTTGGGTTTCTTAAGAATTAGATGTTCTGTCCTGAT
TCTATTGACAAAGAACATTCATAAATTATTGTAATATCATTTATAATATATGGTGTTGTATGAC
TTTGTTCAGTAGAAAAGGCCAAAGTACCATGGGTATTACCCAGTCTTTGGCTACAGATCCAGAA
TATTCACAGGTAGGATGTCCACATAACCAGATTCTTAATGAAACATATTTAGAAGATATTTTGT
TTAGAAAAACACCTTCTTTAAAGAAAATTAGCTTTTTAGAGTGGATTCTGGAATGTTCTCTCTT
GTCTCTTTGGGAATATCAGAAGGGGAAACAATCCCCATCACACTTTTCAGATATAAACATTGTA
TTTAAAGAAAGCAGAATCTTAAGGGACAGTAGTTGTTAGCGTATGGGCTGTCTCTGAGGAGGAG
GAATGGCTGACATGGCTCGGGGCGTCTTCATTTTCTCTGAAGGAGATGGTATGTTCATAATAAT
TGTTAAAGTGATTATGGCTAATTACTAAAATAAGAGACTGTGTGAATTGAAGTAACATTTTGTG
TCATGATATTAGAACTCATAAGCACCAAGTATAAACTGTGGCTTGGATGGAGAAGCGAGGACAC
AAAACTGAGGTTATGTATGCTGAAGCTTTTATGCACACACTTCTCTGTAGACCTTTGAACTGAG
TTTGAATCAATATGTGACTCTTACCTGGGTTACTGCAAAGGACCTCCCAGCAGCTTCTAAAATC
ATAGTGAGCTTTTTATAAAGGAGTTTAATTAATGCAGCATTGTTTCTAACCAGTGATTTGGTAA
GCTGAAGCACGTGTGTTCCTGGACTCGCAAAAACAACCTAAACCTTCCTCAGTAATTAAAACTG
TATGACCTTGGGAGCCTGTTGTAATAGGACTCGAGCTTACACAAGCAGAAAAATATGTTGGAAT
TGAGGCATTTTGTAAGGTACCTTAATCCTTGATAATTACTAGTGTATGATTATACCCTTCCTAC
AAGGACTCTCTAGTTGTATGTAGTAAGTATGTATATATGTTCATATGAACATGAACGATATAGA
CAATAGAAATTAACCCAAAGAGGATTCCGTTATTCCCTGGAGTGTCCTCCATTTACCATGGTTT
TATTAGATGGCAGTGCTGTGACTCTTCATGTAGATAATGCAGACATTCTCAGCACCTCAGTCTA
GAGTGTTTGAGTCAACTCTGTATAAATGTAAATTAGTCTAAGAGGACAAAGGAATATCTAATCA
AGTTATTTTTCAAAAGACTGCAATAAGTTTTTGGTCTAAACCTAAACTTTGTTCATTTTGTATA
TGTTATGTGTTAATTCTAATCGCACCATTGTGATGTGTATATACAGTGTGCACAAAATGTTTGT
GAATTTTTATTATATTTGTAGATTATGTATGATGGCATTGCATAAGATTGTTTTGCTTGTAAAA
ATTTGAAGGTGCAATCAAAGCTACTAGTTTTGATTTTTAAGAAGCTTTTACCGTATCCGTCCCT
TTCCTTCTGTGCGGTTCTAACTGAAGGACGTTTGTGTCAGGCATTTGCATCAAATTGCTGAACA
GCGCTAACAGCCACACGAAATCACCAACTTCTAACGATTATTTGGGGAGGGTTCGGTCTAGAAT
TTTTAAGCCCTATTTACATCCCAAAGTAGAAAGATTATATTTACTAGAGCTATTCAAAAAATAC
ACTTTTCTATGTTGTGAAAACAGGGCAGAAGAGTAAATCATACAGAAATAAACATTTATACTAT
TCTGTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250658 ⟹ XP_006250720

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,434,093 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,129,797 - 9,188,244 (+)	NCBI
Rnor_6.0	14	10,770,072 - 10,828,115 (+)	NCBI
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI

Sequence:

show sequence

CGTATTATGGGATGCGGCGGTGGAATGGCGCTGGGCGCGTGATTTTGAACAAACCCGGGTCTGT
GTTTCGGAGGCGCCGCCGCCGCCGCGGCTGCTGGGAGCCCGGGGAGCGCGGCGCGAGAAGGAGG
CGGCGGCGCCGCCGGCTCGGCACCTGGGCATCCTTCCAGAAGCAGTGCGACCATGGAGGTGGTG
CCGGCCGAGGTGAATAGCTTGCTTCCAGACGACATAATGGACACTGCTATTACTTTAGTGGATG
AGGATAGCATTGAGGCTGTAATTGTGTCATCCCCAATTCCCATGGAGACAGAACTGGAAGAAAT
TGTCAGCATAAATTCTACTGGTGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTG
TACAGTAATCACACTAACCAAGTTGCAGTGAATACCACAGTTTCTAAAGCAGACTCCAATACCA
CAGTGAAACCAGCATTTCCGAGTGGCCTTCAAAAGCTTGGTGCTCAGACTCCTGTGACTATATC
AGCCAATCAGATTATTTTAAACAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACC
CTTAAACCAGATGGACAGAAGTTAATCTTAACAACTTTGGGCAAGTCTGGCTCACCAATTGTTT
TAGCACTTCCCCATAGCCAACTACCCCAGGCTCAGAAAGTTACAGCTCAGGCCCAACCAGGAGA
CGCTAAGTTACCACCGCAGCAGATCAAAGTAGTTACCATTGGAGGGAGGCCAGAGGTGAAACCT
GCCATTGGGGTCTCAGCACTGACCCCAGGAAGTCAACTGATTAATACCACAACTCAGCCCTCTG
TGTTACAGACCCAACAGTTAAAAACAGTGCAGATTGCTAAGAAGCCTCGAACACCAACCTCGGG
TCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATTAATAGTAAAGCAGTTACGGGACAGACA
ACTCAAGCGTCTCCACCCGTCGTCACAGGCAGGGTTCTTTCACAGTCTGCTCCTGGAACTCCAT
CCAAGACTATAACAATATCAGAAAGTGGTGTTATTGGCTCAACTTTAAATTCTACAACACAGAC
ACCAAATAAGATAGCCATCTCACCTTTGAAGTCACCAAATAAGACAGTGAAGTCGGCTGTGCAG
ACCATCACGGTGGGCGGAATGAGCACGTCGCAGTTTAAGACCATCATTCCCCTGGCAGCTGCTC
CCAATGTCCAGCCCATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTCGTCACTGCCAC
AACCGCCGGTAGCTCAGCCCCACCAGTCAGTCAGAGTCCCAGTGTCAACACTCAGCCTCTTCAG
CAAGCAAAGCCAGTGGTTGTTAATACCACGCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTC
AGGCCGTTAAGCAAGTTGTTCCAAAACCAATCAATTCAACTTCACAAATTGTAACTACTAGCCA
GCCCCAGCAACGGCTCATCATGCCGGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAAC
CTGCCGCCAGGCACTGTGTTGGCGCCAGCTCCAGGAACGGGGAACGTGGGCTACGCAGTGCTTC
CGGCTCAGTACGTCACTCAGTTGCAGCAGTCCTCCTACGTGTCGATAGCAGGCAACTCTAACTT
CACCGGGACATCGGGCATCCAGACACAGGCAAGGGTTTCATTCAACGGCATAATTCCATCAGAG
TCTGCCAGTCGGCCCAGAAAACCCTGTAACTGTACAAAATCACTGTGTTTGAAATTATACTGTG
ACTGCTTTGCCAATGGTGAATTCTGCAACAACTGCAATTGTACCAATTGTTACAACAACTTAGA
GCATGAGAATGAGCGACAAAAGGCAATAAAGGCATGCCTTGACAGAAACCCGGAAGCCTTCAAG
CCAAAGATAGGAAAAGGAAAAGAGGGGGAGTCGGATCGGCGGCACAGCAAAGGCTGTAACTGCA
AACGGTCAGGGTGTCTTAAAAACTACTGCGAGTGCTATGAGGCAAAAATCATGTGCTCCTCCAT
ATGCAAGTGCATCGGCTGTAAGAACTTCGAAGAAAGCCCAGAACGGAAGACATTGATGCACTTA
GCAGATGCGGCTGAAGTAAGGGTCCAGCAGCAGACAGCAGCGAAGACCAAGCTGTCCTCTCAGA
TCTCAGACCTGCTTACCAGGCCCACCCCCGCTCTGAACAGTGGAGGAGGAAAATTGCCATTCAC
ATTTGTAACTAAAGAAGTAGCTGAAGCCACGTGTAACTGCCTTCTTGCCCAGGCAGAGCAGGCA
GACAAGAAGGGGAAATCAAAGGCGGCAGCAGAGCGGATGATCCTGGAGGAGTTTGGACGGTGTT
TGATGAGCGTCATCAACTCTGCAGGAAAAGCAAAAAGTGACCCCTGTGCCATGCACTGCTAACT
GTTGCACAAAAGACTGAATGGAACTGTACAGGAAATTTAAGGTGCCGGGACACTTGATTTTCTA
GAAGATAGTTTAACAATTACTGTATTTTAATTCAGCCTTTGTTTTAAGAGATCTGAAACTATAA
TATTGAAAGAGAAGAAATTTTAAATGAAGAAATTAGTACATTTTAAATCTTAGTTAATTCTGCC
TATGCCCCTTCTAAATTTTTTTCTTTAAAAATTTTTCTTTTATTGTATTTTATATTTTTTAATT
TGCTTGGGTTTCTTAAGAATTAGATGTTCTGTCCTGATTCTATTGACAAAGAACATTCATAAAT
TATTGTAATATCATTTATAATATATGGTGTTGTATGACTTTGTTCAGTAGAAAAGGCCAAAGTA
CCATGGGTATTACCCAGTCTTTGGCTACAGATCCAGAATATTCACAGGTAGGATGTCCACATAA
CCAGATTCTTAATGAAACATATTTAGAAGATATTTTGTTTAGAAAAACACCTTCTTTAAAGAAA
ATTAGCTTTTTAGAGTGGATTCTGGAATGTTCTCTCTTGTCTCTTTGGGAATATCAGAAGGGGA
AACAATCCCCATCACACTTTTCAGATATAAACATTGTATTTAAAGAAAGCAGAATCTTAAGGGA
CAGTAGTTGTTAGCGTATGGGCTGTCTCTGAGGAGGAGGAATGGCTGACATGGCTCGGGGCGTC
TTCATTTTCTCTGAAGGAGATGGTATGTTCATAATAATTGTTAAAGTGATTATGGCTAATTACT
AAAATAAGAGACTGTGTGAATTGAAGTAACATTTTGTGTCATGATATTAGAACTCATAAGCACC
AAGTATAAACTGTGGCTTGGATGGAGAAGCGAGGACACAAAACTGAGGTTATGTATGCTGAAGC
TTTTATGCACACACTTCTCTGTAGACCTTTGAACTGAGTTTGAATCAATATGTGACTCTTACCT
GGGTTACTGCAAAGGACCTCCCAGCAGCTTCTAAAATCATAGTGAGCTTTTTATAAAGGAGTTT
AATTAATGCAGCATTGTTTCTAACCAGTGATTTGGTAAGCTGAAGCACGTGTGTTCCTGGACTC
GCAAAAACAACCTAAACCTTCCTCAGTAATTAAAACTGTATGACCTTGGGAGCCTGTTGTAATA
GGACTCGAGCTTACACAAGCAGAAAAATATGTTGGAATTGAGGCATTTTGTAAGGTACCTTAAT
CCTTGATAATTACTAGTGTATGATTATACCCTTCCTACAAGGACTCTCTAGTTGTATGTAGTAA
GTATGTATATATGTTCATATGAACATGAACGATATAGACAATAGAAATTAACCCAAAGAGGATT
CCGTTATTCCCTGGAGTGTCCTCCATTTACCATGGTTTTATTAGATGGCAGTGCTGTGACTCTT
CATGTAGATAATGCAGACATTCTCAGCACCTCAGTCTAGAGTGTTTGAGTCAACTCTGTATAAA
TGTAAATTAGTCTAAGAGGACAAAGGAATATCTAATCAAGTTATTTTTCAAAAGACTGCAATAA
GTTTTTGGTCTAAACCTAAACTTTGTTCATTTTGTATATGTTATGTGTTAATTCTAATCGCACC
ATTGTGATGTGTATATACAGTGTGCACAAAATGTTTGTGAATTTTTATTATATTTGTAGATTAT
GTATGATGGCATTGCATAAGATTGTTTTGCTTGTAAAAATTTGAAGGTGCAATCAAAGCTACTA
GTTTTGATTTTTAAGAAGCTTTTACCGTATCCGTCCCTTTCCTTCTGTGCGGTTCTAACTGAAG
GACGTTTGTGTCAGGCATTTGCATCAAATTGCTGAACAGCGCTAACAGCCACACGAAATCACCA
ACTTCTAACGATTATTTGGGGAGGGTTCGGTCTAGAATTTTTAAGCCCTATTTACATCCCAAAG
TAGAAAGATTATATTTACTAGAGCTATTCAAAAAATACACTTTTCTATGTTGTGAAAACAGGGC
AGAAGAGTAAATCATACAGAAATAAACATTTATACTATTCTGTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250659 ⟹ XP_006250721

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,436,285 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,131,971 - 9,188,242 (+)	NCBI
Rnor_6.0	14	10,772,068 - 10,828,115 (+)	NCBI
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI

Sequence:

show sequence

GGCGGCGGCCGGGGCTCGGCTGTTGGGGGAAGCTGCTGAGCTGTGATGGTGATGACGAGGTGAA
AATGGCGGATCTTTCGAAATACAATCCCGGCCCCTGACATACCAGAGGCGGTGGCCGCGGCGAC
ATCGCCACCCCAGCTCCCTCCTGGGTCCCCGAATACTGTATAGCGCTCCATTTCGGGCAAACTG
GGAAAGGAAGCAGCTGGACAGAGCTACGGTGCACAGGCAAAACAAGCACTGCCGGGCTCGAAAT
TGCCCGGGACCTCGGAGCCCGCTCCTCGGAGCCGGAGGGTGGAGAAAGCAGCAGCCTCTGGAGC
ACCTGGGCATCCTTCCAGAAGCAGTGCGACCATGGAGGTGGTGCCGGCCGAGGTGAATAGCTTG
CTTCCAGACGACATAATGGACACTGCTATTACTTTAGTGGATGAGGATAGCATTGAGGCTGTAA
TTGTGTCATCCCCAATTCCCATGGAGACAGAACTGGAAGAAATTGTCAGCATAAATTCTACTGG
TGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTGTACAGTAATCACACTAACCAA
GTTGCAGTGAATACCACAGTTTCTAAAGCAGACTCCAATACCACAGTGAAACCAGCATTTCCGA
GTGGCCTTCAAAAGCTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTTAAA
CAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAAG
TTAATCTTAACAACTTTGGGCAAGTCTGGCTCACCAATTGTTTTAGCACTTCCCCATAGCCAAC
TACCCCAGGCTCAGAAAGTTACAGCTCAGGCCCAACCAGGAGACGCTAAGTTACCACCGCAGCA
GATCAAAGTAGTTACCATTGGAGGGAGGCCAGAGGTGAAACCTGCCATTGGGGTCTCAGCACTG
ACCCCAGGAAGTCAACTGATTAATACCACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAA
AAACAGTGCAGATTGCTAAGAAGCCTCGAACACCAACCTCGGGTCCAGTGATCACGAAGCTGAT
TTTTGCAAAACCAATTAATAGTAAAGCAGTTACGGGACAGACAACTCAAGCGTCTCCACCCGTC
GTCACAGGCAGGGTTCTTTCACAGTCTGCTCCTGGAACTCCATCCAAGACTATAACAATATCAG
AAAGTGGTGTTATTGGCTCAACTTTAAATTCTACAACACAGACACCAAATAAGATAGCCATCTC
ACCTTTGAAGTCACCAAATAAGACAGTGAAGTCGGCTGTGCAGACCATCACGGTGGGCGGAATG
AGCACGTCGCAGTTTAAGACCATCATTCCCCTGGCAGCTGCTCCCAATGTCCAGCCCATTCAAG
TGCCTGGAAGCAAGTTTCATTATGTCCGACTCGTCACTGCCACAACCGCCGGTAGCTCAGCCCC
ACCAGTCAGTCAGAGTCCCAGTGTCAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTTGTT
AATACCACGCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTTC
CAAAACCAATCAATTCAACTTCACAAATTGTAACTACTAGCCAGCCCCAGCAACGGCTCATCAT
GCCGGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCGCCAGGCACTGTGTTG
GCGCCAGCTCCAGGAACGGGGAACGTGGGCTACGCAGTGCTTCCGGCTCAGTACGTCACTCAGT
TGCAGCAGTCCTCCTACGTGTCGATAGCAGGCAACTCTAACTTCACCGGGACATCGGGCATCCA
GACACAGGCAAGGGTTTCATTCAACGGCATAATTCCATCAGAGTCTGCCAGTCGGCCCAGAAAA
CCCTGTAACTGTACAAAATCACTGTGTTTGAAATTATACTGTGACTGCTTTGCCAATGGTGAAT
TCTGCAACAACTGCAATTGTACCAATTGTTACAACAACTTAGAGCATGAGAATGAGCGACAAAA
GGCAATAAAGGCATGCCTTGACAGAAACCCGGAAGCCTTCAAGCCAAAGATAGGAAAAGGAAAA
GAGGGGGAGTCGGATCGGCGGCACAGCAAAGGCTGTAACTGCAAACGGTCAGGGTGTCTTAAAA
ACTACTGCGAGTGCTATGAGGCAAAAATCATGTGCTCCTCCATATGCAAGTGCATCGGCTGTAA
GAACTTCGAAGAAAGCCCAGAACGGAAGACATTGATGCACTTAGCAGATGCGGCTGAAGTAAGG
GTCCAGCAGCAGACAGCAGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTGCTTACCAGGC
CCACCCCCGCTCTGAACAGTGGAGGAGGAAAATTGCCATTCACATTTGTAACTAAAGAAGTAGC
TGAAGCCACGTGTAACTGCCTTCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAAG
GCGGCAGCAGAGCGGATGATCCTGGAGGAGTTTGGACGGTGTTTGATGAGCGTCATCAACTCTG
CAGGAAAAGCAAAAAGTGACCCCTGTGCCATGCACTGCTAACTGTTGCACAAAAGACTGAATGG
AACTGTACAGGAAATTTAAGGTGCCGGGACACTTGATTTTCTAGAAGATAGTTTAACAATTACT
GTATTTTAATTCAGCCTTTGTTTTAAGAGATCTGAAACTATAATATTGAAAGAGAAGAAATTTT
AAATGAAGAAATTAGTACATTTTAAATCTTAGTTAATTCTGCCTATGCCCCTTCTAAATTTTTT
TCTTTAAAAATTTTTCTTTTATTGTATTTTATATTTTTTAATTTGCTTGGGTTTCTTAAGAATT
AGATGTTCTGTCCTGATTCTATTGACAAAGAACATTCATAAATTATTGTAATATCATTTATAAT
ATATGGTGTTGTATGACTTTGTTCAGTAGAAAAGGCCAAAGTACCATGGGTATTACCCAGTCTT
TGGCTACAGATCCAGAATATTCACAGGTAGGATGTCCACATAACCAGATTCTTAATGAAACATA
TTTAGAAGATATTTTGTTTAGAAAAACACCTTCTTTAAAGAAAATTAGCTTTTTAGAGTGGATT
CTGGAATGTTCTCTCTTGTCTCTTTGGGAATATCAGAAGGGGAAACAATCCCCATCACACTTTT
CAGATATAAACATTGTATTTAAAGAAAGCAGAATCTTAAGGGACAGTAGTTGTTAGCGTATGGG
CTGTCTCTGAGGAGGAGGAATGGCTGACATGGCTCGGGGCGTCTTCATTTTCTCTGAAGGAGAT
GGTATGTTCATAATAATTGTTAAAGTGATTATGGCTAATTACTAAAATAAGAGACTGTGTGAAT
TGAAGTAACATTTTGTGTCATGATATTAGAACTCATAAGCACCAAGTATAAACTGTGGCTTGGA
TGGAGAAGCGAGGACACAAAACTGAGGTTATGTATGCTGAAGCTTTTATGCACACACTTCTCTG
TAGACCTTTGAACTGAGTTTGAATCAATATGTGACTCTTACCTGGGTTACTGCAAAGGACCTCC
CAGCAGCTTCTAAAATCATAGTGAGCTTTTTATAAAGGAGTTTAATTAATGCAGCATTGTTTCT
AACCAGTGATTTGGTAAGCTGAAGCACGTGTGTTCCTGGACTCGCAAAAACAACCTAAACCTTC
CTCAGTAATTAAAACTGTATGACCTTGGGAGCCTGTTGTAATAGGACTCGAGCTTACACAAGCA
GAAAAATATGTTGGAATTGAGGCATTTTGTAAGGTACCTTAATCCTTGATAATTACTAGTGTAT
GATTATACCCTTCCTACAAGGACTCTCTAGTTGTATGTAGTAAGTATGTATATATGTTCATATG
AACATGAACGATATAGACAATAGAAATTAACCCAAAGAGGATTCCGTTATTCCCTGGAGTGTCC
TCCATTTACCATGGTTTTATTAGATGGCAGTGCTGTGACTCTTCATGTAGATAATGCAGACATT
CTCAGCACCTCAGTCTAGAGTGTTTGAGTCAACTCTGTATAAATGTAAATTAGTCTAAGAGGAC
AAAGGAATATCTAATCAAGTTATTTTTCAAAAGACTGCAATAAGTTTTTGGTCTAAACCTAAAC
TTTGTTCATTTTGTATATGTTATGTGTTAATTCTAATCGCACCATTGTGATGTGTATATACAGT
GTGCACAAAATGTTTGTGAATTTTTATTATATTTGTAGATTATGTATGATGGCATTGCATAAGA
TTGTTTTGCTTGTAAAAATTTGAAGGTGCAATCAAAGCTACTAGTTTTGATTTTTAAGAAGCTT
TTACCGTATCCGTCCCTTTCCTTCTGTGCGGTTCTAACTGAAGGACGTTTGTGTCAGGCATTTG
CATCAAATTGCTGAACAGCGCTAACAGCCACACGAAATCACCAACTTCTAACGATTATTTGGGG
AGGGTTCGGTCTAGAATTTTTAAGCCCTATTTACATCCCAAAGTAGAAAGATTATATTTACTAG
AGCTATTCAAAAAATACACTTTTCTATGTTGTGAAAACAGGGCAGAAGAGTAAATCATACAGAA
ATAAACATTTATACTATTCTGTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250661 ⟹ XP_006250723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,434,093 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,129,797 - 9,188,244 (+)	NCBI
Rnor_6.0	14	10,770,072 - 10,828,115 (+)	NCBI
Rnor_5.0	14	10,717,462 - 10,775,710 (+)	NCBI

Sequence:

show sequence

CGTATTATGGGATGCGGCGGTGGAATGGCGCTGGGCGCGTGATTTTGAACAAACCCGGGTCTGT
GTTTCGGAGGCGCCGCCGCCGCCGCGGCTGCTGGGAGCCCGGGGAGCGCGGCGCGAGAAGGAGG
CGGCGGCGCCGCCGGCTCGGCACCTGGGCATCCTTCCAGAAGCAGTGCGACCATGGAGGTGGTG
CCGGCCGAGATTGCTAAGAAGCCTCGAACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTT
TTGCAAAACCAATTAATAGTAAAGCAGTTACGGGACAGACAACTCAAGCGTCTCCACCCGTCGT
CACAGGCAGGGTTCTTTCACAGTCTGCTCCTGGAACTCCATCCAAGACTATAACAATATCAGAA
AGTGGTGTTATTGGCTCAACTTTAAATTCTACAACACAGACACCAAATAAGATAGCCATCTCAC
CTTTGAAGTCACCAAATAAGACAGTGAAGTCGGCTGTGCAGACCATCACGGTGGGCGGAATGAG
CACGTCGCAGTTTAAGACCATCATTCCCCTGGCAGCTGCTCCCAATGTCCAGCCCATTCAAGTG
CCTGGAAGCAAGTTTCATTATGTCCGACTCGTCACTGCCACAACCGCCGGTAGCTCAGCCCCAC
CAGTCAGTCAGAGTCCCAGTGTCAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTTGTTAA
TACCACGCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTTCCA
AAACCAATCAATTCAACTTCACAAATTGTAACTACTAGCCAGCCCCAGCAACGGCTCATCATGC
CGGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCGCCAGGCACTGTGTTGGC
GCCAGCTCCAGGAACGGGGAACGTGGGCTACGCAGTGCTTCCGGCTCAGTACGTCACTCAGTTG
CAGCAGTCCTCCTACGTGTCGATAGCAGGCAACTCTAACTTCACCGGGACATCGGGCATCCAGA
CACAGGCAAGGGTTTCATTCAACGGCATAATTCCATCAGAGTCTGCCAGTCGGCCCAGAAAACC
CTGTAACTGTACAAAATCACTGTGTTTGAAATTATACTGTGACTGCTTTGCCAATGGTGAATTC
TGCAACAACTGCAATTGTACCAATTGTTACAACAACTTAGAGCATGAGAATGAGCGACAAAAGG
CAATAAAGGCATGCCTTGACAGAAACCCGGAAGCCTTCAAGCCAAAGATAGGAAAAGGAAAAGA
GGGGGAGTCGGATCGGCGGCACAGCAAAGGCTGTAACTGCAAACGGTCAGGGTGTCTTAAAAAC
TACTGCGAGTGCTATGAGGCAAAAATCATGTGCTCCTCCATATGCAAGTGCATCGGCTGTAAGA
ACTTCGAAGAAAGCCCAGAACGGAAGACATTGATGCACTTAGCAGATGCGGCTGAAGTAAGGGT
CCAGCAGCAGACAGCAGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTGCTTACCAGGCCC
ACCCCCGCTCTGAACAGTGGAGGAGGAAAATTGCCATTCACATTTGTAACTAAAGAAGTAGCTG
AAGCCACGTGTAACTGCCTTCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAAGGC
GGCAGCAGAGCGGATGATCCTGGAGGAGTTTGGACGGTGTTTGATGAGCGTCATCAACTCTGCA
GGAAAAGCAAAAAGTGACCCCTGTGCCATGCACTGCTAACTGTTGCACAAAAGACTGAATGGAA
CTGTACAGGAAATTTAAGGTGCCGGGACACTTGATTTTCTAGAAGATAGTTTAACAATTACTGT
ATTTTAATTCAGCCTTTGTTTTAAGAGATCTGAAACTATAATATTGAAAGAGAAGAAATTTTAA
ATGAAGAAATTAGTACATTTTAAATCTTAGTTAATTCTGCCTATGCCCCTTCTAAATTTTTTTC
TTTAAAAATTTTTCTTTTATTGTATTTTATATTTTTTAATTTGCTTGGGTTTCTTAAGAATTAG
ATGTTCTGTCCTGATTCTATTGACAAAGAACATTCATAAATTATTGTAATATCATTTATAATAT
ATGGTGTTGTATGACTTTGTTCAGTAGAAAAGGCCAAAGTACCATGGGTATTACCCAGTCTTTG
GCTACAGATCCAGAATATTCACAGGTAGGATGTCCACATAACCAGATTCTTAATGAAACATATT
TAGAAGATATTTTGTTTAGAAAAACACCTTCTTTAAAGAAAATTAGCTTTTTAGAGTGGATTCT
GGAATGTTCTCTCTTGTCTCTTTGGGAATATCAGAAGGGGAAACAATCCCCATCACACTTTTCA
GATATAAACATTGTATTTAAAGAAAGCAGAATCTTAAGGGACAGTAGTTGTTAGCGTATGGGCT
GTCTCTGAGGAGGAGGAATGGCTGACATGGCTCGGGGCGTCTTCATTTTCTCTGAAGGAGATGG
TATGTTCATAATAATTGTTAAAGTGATTATGGCTAATTACTAAAATAAGAGACTGTGTGAATTG
AAGTAACATTTTGTGTCATGATATTAGAACTCATAAGCACCAAGTATAAACTGTGGCTTGGATG
GAGAAGCGAGGACACAAAACTGAGGTTATGTATGCTGAAGCTTTTATGCACACACTTCTCTGTA
GACCTTTGAACTGAGTTTGAATCAATATGTGACTCTTACCTGGGTTACTGCAAAGGACCTCCCA
GCAGCTTCTAAAATCATAGTGAGCTTTTTATAAAGGAGTTTAATTAATGCAGCATTGTTTCTAA
CCAGTGATTTGGTAAGCTGAAGCACGTGTGTTCCTGGACTCGCAAAAACAACCTAAACCTTCCT
CAGTAATTAAAACTGTATGACCTTGGGAGCCTGTTGTAATAGGACTCGAGCTTACACAAGCAGA
AAAATATGTTGGAATTGAGGCATTTTGTAAGGTACCTTAATCCTTGATAATTACTAGTGTATGA
TTATACCCTTCCTACAAGGACTCTCTAGTTGTATGTAGTAAGTATGTATATATGTTCATATGAA
CATGAACGATATAGACAATAGAAATTAACCCAAAGAGGATTCCGTTATTCCCTGGAGTGTCCTC
CATTTACCATGGTTTTATTAGATGGCAGTGCTGTGACTCTTCATGTAGATAATGCAGACATTCT
CAGCACCTCAGTCTAGAGTGTTTGAGTCAACTCTGTATAAATGTAAATTAGTCTAAGAGGACAA
AGGAATATCTAATCAAGTTATTTTTCAAAAGACTGCAATAAGTTTTTGGTCTAAACCTAAACTT
TGTTCATTTTGTATATGTTATGTGTTAATTCTAATCGCACCATTGTGATGTGTATATACAGTGT
GCACAAAATGTTTGTGAATTTTTATTATATTTGTAGATTATGTATGATGGCATTGCATAAGATT
GTTTTGCTTGTAAAAATTTGAAGGTGCAATCAAAGCTACTAGTTTTGATTTTTAAGAAGCTTTT
ACCGTATCCGTCCCTTTCCTTCTGTGCGGTTCTAACTGAAGGACGTTTGTGTCAGGCATTTGCA
TCAAATTGCTGAACAGCGCTAACAGCCACACGAAATCACCAACTTCTAACGATTATTTGGGGAG
GGTTCGGTCTAGAATTTTTAAGCCCTATTTACATCCCAAAGTAGAAAGATTATATTTACTAGAG
CTATTCAAAAAATACACTTTTCTATGTTGTGAAAACAGGGCAGAAGAGTAAATCATACAGAAAT
AAACATTTATACTATTCTGTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008770022 ⟹ XP_008768244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,434,765 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,130,444 - 9,188,242 (+)	NCBI
Rnor_6.0	14	10,770,801 - 10,828,115 (+)	NCBI

Sequence:

show sequence

GCTCAGCCTCTAGCGGGCTCTCTGTAGAAACGCGCTGGAGTGGGTGGGAGACAGCCCTTGATTA
AGCCCGAGCCTGCTTGACTTTTATATGGAGTTGTCATTCAAACAAGCACCTGGGCATCCTTCCA
GAAGCAGTGCGACCATGGAGGTGGTGCCGGCCGAGATTGCTAAGAAGCCTCGAACACCAACCTC
GGGTCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATTAATAGTAAAGCAGTTACGGGACAG
ACAACTCAAGCGTCTCCACCCGTCGTCACAGGCAGGGTTCTTTCACAGTCTGCTCCTGGAACTC
CATCCAAGACTATAACAATATCAGAAAGTGGTGTTATTGGCTCAACTTTAAATTCTACAACACA
GACACCAAATAAGATAGCCATCTCACCTTTGAAGTCACCAAATAAGACAGTGAAGTCGGCTGTG
CAGACCATCACGGTGGGCGGAATGAGCACGTCGCAGTTTAAGACCATCATTCCCCTGGCAGCTG
CTCCCAATGTCCAGCCCATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTCGTCACTGC
CACAACCGCCGGTAGCTCAGCCCCACCAGTCAGTCAGAGTCCCAGTGTCAACACTCAGCCTCTT
CAGCAAGCAAAGCCAGTGGTTGTTAATACCACGCCTGTACGGATGTCAGTTCCATTTGTCCAAG
CTCAGGCCGTTAAGCAAGTTGTTCCAAAACCAATCAATTCAACTTCACAAATTGTAACTACTAG
CCAGCCCCAGCAACGGCTCATCATGCCGGCCACACCACTGCCTCAGATCCAGCCCAACCTCACT
AACCTGCCGCCAGGCACTGTGTTGGCGCCAGCTCCAGGAACGGGGAACGTGGGCTACGCAGTGC
TTCCGGCTCAGTACGTCACTCAGTTGCAGCAGTCCTCCTACGTGTCGATAGCAGGCAACTCTAA
CTTCACCGGGACATCGGGCATCCAGACACAGGCAAGGGTTTCATTCAACGGCATAATTCCATCA
GAGTCTGCCAGTCGGCCCAGAAAACCCTGTAACTGTACAAAATCACTGTGTTTGAAATTATACT
GTGACTGCTTTGCCAATGGTGAATTCTGCAACAACTGCAATTGTACCAATTGTTACAACAACTT
AGAGCATGAGAATGAGCGACAAAAGGCAATAAAGGCATGCCTTGACAGAAACCCGGAAGCCTTC
AAGCCAAAGATAGGAAAAGGAAAAGAGGGGGAGTCGGATCGGCGGCACAGCAAAGGCTGTAACT
GCAAACGGTCAGGGTGTCTTAAAAACTACTGCGAGTGCTATGAGGCAAAAATCATGTGCTCCTC
CATATGCAAGTGCATCGGCTGTAAGAACTTCGAAGAAAGCCCAGAACGGAAGACATTGATGCAC
TTAGCAGATGCGGCTGAAGTAAGGGTCCAGCAGCAGACAGCAGCGAAGACCAAGCTGTCCTCTC
AGATCTCAGACCTGCTTACCAGGCCCACCCCCGCTCTGAACAGTGGAGGAGGAAAATTGCCATT
CACATTTGTAACTAAAGAAGTAGCTGAAGCCACGTGTAACTGCCTTCTTGCCCAGGCAGAGCAG
GCAGACAAGAAGGGGAAATCAAAGGCGGCAGCAGAGCGGATGATCCTGGAGGAGTTTGGACGGT
GTTTGATGAGCGTCATCAACTCTGCAGGAAAAGCAAAAAGTGACCCCTGTGCCATGCACTGCTA
ACTGTTGCACAAAAGACTGAATGGAACTGTACAGGAAATTTAAGGTGCCGGGACACTTGATTTT
CTAGAAGATAGTTTAACAATTACTGTATTTTAATTCAGCCTTTGTTTTAAGAGATCTGAAACTA
TAATATTGAAAGAGAAGAAATTTTAAATGAAGAAATTAGTACATTTTAAATCTTAGTTAATTCT
GCCTATGCCCCTTCTAAATTTTTTTCTTTAAAAATTTTTCTTTTATTGTATTTTATATTTTTTA
ATTTGCTTGGGTTTCTTAAGAATTAGATGTTCTGTCCTGATTCTATTGACAAAGAACATTCATA
AATTATTGTAATATCATTTATAATATATGGTGTTGTATGACTTTGTTCAGTAGAAAAGGCCAAA
GTACCATGGGTATTACCCAGTCTTTGGCTACAGATCCAGAATATTCACAGGTAGGATGTCCACA
TAACCAGATTCTTAATGAAACATATTTAGAAGATATTTTGTTTAGAAAAACACCTTCTTTAAAG
AAAATTAGCTTTTTAGAGTGGATTCTGGAATGTTCTCTCTTGTCTCTTTGGGAATATCAGAAGG
GGAAACAATCCCCATCACACTTTTCAGATATAAACATTGTATTTAAAGAAAGCAGAATCTTAAG
GGACAGTAGTTGTTAGCGTATGGGCTGTCTCTGAGGAGGAGGAATGGCTGACATGGCTCGGGGC
GTCTTCATTTTCTCTGAAGGAGATGGTATGTTCATAATAATTGTTAAAGTGATTATGGCTAATT
ACTAAAATAAGAGACTGTGTGAATTGAAGTAACATTTTGTGTCATGATATTAGAACTCATAAGC
ACCAAGTATAAACTGTGGCTTGGATGGAGAAGCGAGGACACAAAACTGAGGTTATGTATGCTGA
AGCTTTTATGCACACACTTCTCTGTAGACCTTTGAACTGAGTTTGAATCAATATGTGACTCTTA
CCTGGGTTACTGCAAAGGACCTCCCAGCAGCTTCTAAAATCATAGTGAGCTTTTTATAAAGGAG
TTTAATTAATGCAGCATTGTTTCTAACCAGTGATTTGGTAAGCTGAAGCACGTGTGTTCCTGGA
CTCGCAAAAACAACCTAAACCTTCCTCAGTAATTAAAACTGTATGACCTTGGGAGCCTGTTGTA
ATAGGACTCGAGCTTACACAAGCAGAAAAATATGTTGGAATTGAGGCATTTTGTAAGGTACCTT
AATCCTTGATAATTACTAGTGTATGATTATACCCTTCCTACAAGGACTCTCTAGTTGTATGTAG
TAAGTATGTATATATGTTCATATGAACATGAACGATATAGACAATAGAAATTAACCCAAAGAGG
ATTCCGTTATTCCCTGGAGTGTCCTCCATTTACCATGGTTTTATTAGATGGCAGTGCTGTGACT
CTTCATGTAGATAATGCAGACATTCTCAGCACCTCAGTCTAGAGTGTTTGAGTCAACTCTGTAT
AAATGTAAATTAGTCTAAGAGGACAAAGGAATATCTAATCAAGTTATTTTTCAAAAGACTGCAA
TAAGTTTTTGGTCTAAACCTAAACTTTGTTCATTTTGTATATGTTATGTGTTAATTCTAATCGC
ACCATTGTGATGTGTATATACAGTGTGCACAAAATGTTTGTGAATTTTTATTATATTTGTAGAT
TATGTATGATGGCATTGCATAAGATTGTTTTGCTTGTAAAAATTTGAAGGTGCAATCAAAGCTA
CTAGTTTTGATTTTTAAGAAGCTTTTACCGTATCCGTCCCTTTCCTTCTGTGCGGTTCTAACTG
AAGGACGTTTGTGTCAGGCATTTGCATCAAATTGCTGAACAGCGCTAACAGCCACACGAAATCA
CCAACTTCTAACGATTATTTGGGGAGGGTTCGGTCTAGAATTTTTAAGCCCTATTTACATCCCA
AAGTAGAAAGATTATATTTACTAGAGCTATTCAAAAAATACACTTTTCTATGTTGTGAAAACAG
GGCAGAAGAGTAAATCATACAGAAATAAACATTTATACTATTCTGTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017599168 ⟹ XP_017454657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,436,285 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,131,971 - 9,188,242 (+)	NCBI
Rnor_6.0	14	10,772,068 - 10,828,115 (+)	NCBI

Sequence:

show sequence

GGCGGCGGCCGGGGCTCGGCTGTTGGGGGAAGCTGCTGAGCTGTGATGGTGATGACGAGGTGAA
AATGGCGGATCTTTCGAAATACAATCCCGGCCCCTGACATACCAGAGGCGGTGGCCGCGGCGAC
ATCGCCACCCCAGCTCCCTCCTGGGTCCCCGAATACTGTATAGCGCTCCATTTCGGGCAAACTG
GGAAAGGAAGCAGCTGGACAGAGCTACGGTGCACAGGCAAAACAAGCACTGCCGGGCTCGAAAT
TGCCCGGGACCTCGGAGCCCGCTCCTCGGAGCCGGAGGGTGGAGAAAGCAGCAGCCTCTGGAGC
ACCTGGGCATCCTTCCAGAAGCAGTGCGACCATGGAGGTGGTGCCGGCCGAGATTGCTAAGAAG
CCTCGAACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATTAATAGTA
AAGCAGTTACGGGACAGACAACTCAAGCGTCTCCACCCGTCGTCACAGGCAGGGTTCTTTCACA
GTCTGCTCCTGGAACTCCATCCAAGACTATAACAATATCAGAAAGTGGTGTTATTGGCTCAACT
TTAAATTCTACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCACCAAATAAGA
CAGTGAAGTCGGCTGTGCAGACCATCACGGTGGGCGGAATGAGCACGTCGCAGTTTAAGACCAT
CATTCCCCTGGCAGCTGCTCCCAATGTCCAGCCCATTCAAGTGCCTGGAAGCAAGTTTCATTAT
GTCCGACTCGTCACTGCCACAACCGCCGGTAGCTCAGCCCCACCAGTCAGTCAGAGTCCCAGTG
TCAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTTGTTAATACCACGCCTGTACGGATGTC
AGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTTCCAAAACCAATCAATTCAACTTCA
CAAATTGTAACTACTAGCCAGCCCCAGCAACGGCTCATCATGCCGGCCACACCACTGCCTCAGA
TCCAGCCCAACCTCACTAACCTGCCGCCAGGCACTGTGTTGGCGCCAGCTCCAGGAACGGGGAA
CGTGGGCTACGCAGTGCTTCCGGCTCAGTACGTCACTCAGTTGCAGCAGTCCTCCTACGTGTCG
ATAGCAGGCAACTCTAACTTCACCGGGACATCGGGCATCCAGACACAGGCAAGGGTTTCATTCA
ACGGCATAATTCCATCAGAGTCTGCCAGTCGGCCCAGAAAACCCTGTAACTGTACAAAATCACT
GTGTTTGAAATTATACTGTGACTGCTTTGCCAATGGTGAATTCTGCAACAACTGCAATTGTACC
AATTGTTACAACAACTTAGAGCATGAGAATGAGCGACAAAAGGCAATAAAGGCATGCCTTGACA
GAAACCCGGAAGCCTTCAAGCCAAAGATAGGAAAAGGAAAAGAGGGGGAGTCGGATCGGCGGCA
CAGCAAAGGCTGTAACTGCAAACGGTCAGGGTGTCTTAAAAACTACTGCGAGTGCTATGAGGCA
AAAATCATGTGCTCCTCCATATGCAAGTGCATCGGCTGTAAGAACTTCGAAGAAAGCCCAGAAC
GGAAGACATTGATGCACTTAGCAGATGCGGCTGAAGTAAGGGTCCAGCAGCAGACAGCAGCGAA
GACCAAGCTGTCCTCTCAGATCTCAGACCTGCTTACCAGGCCCACCCCCGCTCTGAACAGTGGA
GGAGGAAAATTGCCATTCACATTTGTAACTAAAGAAGTAGCTGAAGCCACGTGTAACTGCCTTC
TTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAAGGCGGCAGCAGAGCGGATGATCCT
GGAGGAGTTTGGACGGTGTTTGATGAGCGTCATCAACTCTGCAGGAAAAGCAAAAAGTGACCCC
TGTGCCATGCACTGCTAACTGTTGCACAAAAGACTGAATGGAACTGTACAGGAAATTTAAGGTG
CCGGGACACTTGATTTTCTAGAAGATAGTTTAACAATTACTGTATTTTAATTCAGCCTTTGTTT
TAAGAGATCTGAAACTATAATATTGAAAGAGAAGAAATTTTAAATGAAGAAATTAGTACATTTT
AAATCTTAGTTAATTCTGCCTATGCCCCTTCTAAATTTTTTTCTTTAAAAATTTTTCTTTTATT
GTATTTTATATTTTTTAATTTGCTTGGGTTTCTTAAGAATTAGATGTTCTGTCCTGATTCTATT
GACAAAGAACATTCATAAATTATTGTAATATCATTTATAATATATGGTGTTGTATGACTTTGTT
CAGTAGAAAAGGCCAAAGTACCATGGGTATTACCCAGTCTTTGGCTACAGATCCAGAATATTCA
CAGGTAGGATGTCCACATAACCAGATTCTTAATGAAACATATTTAGAAGATATTTTGTTTAGAA
AAACACCTTCTTTAAAGAAAATTAGCTTTTTAGAGTGGATTCTGGAATGTTCTCTCTTGTCTCT
TTGGGAATATCAGAAGGGGAAACAATCCCCATCACACTTTTCAGATATAAACATTGTATTTAAA
GAAAGCAGAATCTTAAGGGACAGTAGTTGTTAGCGTATGGGCTGTCTCTGAGGAGGAGGAATGG
CTGACATGGCTCGGGGCGTCTTCATTTTCTCTGAAGGAGATGGTATGTTCATAATAATTGTTAA
AGTGATTATGGCTAATTACTAAAATAAGAGACTGTGTGAATTGAAGTAACATTTTGTGTCATGA
TATTAGAACTCATAAGCACCAAGTATAAACTGTGGCTTGGATGGAGAAGCGAGGACACAAAACT
GAGGTTATGTATGCTGAAGCTTTTATGCACACACTTCTCTGTAGACCTTTGAACTGAGTTTGAA
TCAATATGTGACTCTTACCTGGGTTACTGCAAAGGACCTCCCAGCAGCTTCTAAAATCATAGTG
AGCTTTTTATAAAGGAGTTTAATTAATGCAGCATTGTTTCTAACCAGTGATTTGGTAAGCTGAA
GCACGTGTGTTCCTGGACTCGCAAAAACAACCTAAACCTTCCTCAGTAATTAAAACTGTATGAC
CTTGGGAGCCTGTTGTAATAGGACTCGAGCTTACACAAGCAGAAAAATATGTTGGAATTGAGGC
ATTTTGTAAGGTACCTTAATCCTTGATAATTACTAGTGTATGATTATACCCTTCCTACAAGGAC
TCTCTAGTTGTATGTAGTAAGTATGTATATATGTTCATATGAACATGAACGATATAGACAATAG
AAATTAACCCAAAGAGGATTCCGTTATTCCCTGGAGTGTCCTCCATTTACCATGGTTTTATTAG
ATGGCAGTGCTGTGACTCTTCATGTAGATAATGCAGACATTCTCAGCACCTCAGTCTAGAGTGT
TTGAGTCAACTCTGTATAAATGTAAATTAGTCTAAGAGGACAAAGGAATATCTAATCAAGTTAT
TTTTCAAAAGACTGCAATAAGTTTTTGGTCTAAACCTAAACTTTGTTCATTTTGTATATGTTAT
GTGTTAATTCTAATCGCACCATTGTGATGTGTATATACAGTGTGCACAAAATGTTTGTGAATTT
TTATTATATTTGTAGATTATGTATGATGGCATTGCATAAGATTGTTTTGCTTGTAAAAATTTGA
AGGTGCAATCAAAGCTACTAGTTTTGATTTTTAAGAAGCTTTTACCGTATCCGTCCCTTTCCTT
CTGTGCGGTTCTAACTGAAGGACGTTTGTGTCAGGCATTTGCATCAAATTGCTGAACAGCGCTA
ACAGCCACACGAAATCACCAACTTCTAACGATTATTTGGGGAGGGTTCGGTCTAGAATTTTTAA
GCCCTATTTACATCCCAAAGTAGAAAGATTATATTTACTAGAGCTATTCAAAAAATACACTTTT
CTATGTTGTGAAAACAGGGCAGAAGAGTAAATCATACAGAAATAAACATTTATACTATTCTGTA
AAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039091835 ⟹ XP_038947763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	9,464,184 - 9,514,091 (+)	NCBI
mRatBN7.2	14	9,159,898 - 9,188,244 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094034	(Get FASTA)	NCBI Sequence Viewer
	NP_001415504	(Get FASTA)	NCBI Sequence Viewer
	NP_001415505	(Get FASTA)	NCBI Sequence Viewer
	NP_001415506	(Get FASTA)	NCBI Sequence Viewer
	NP_001415507	(Get FASTA)	NCBI Sequence Viewer
	NP_001415508	(Get FASTA)	NCBI Sequence Viewer
	XP_006250719	(Get FASTA)	NCBI Sequence Viewer
	XP_006250720	(Get FASTA)	NCBI Sequence Viewer
	XP_006250721	(Get FASTA)	NCBI Sequence Viewer
	XP_006250723	(Get FASTA)	NCBI Sequence Viewer
	XP_008768244	(Get FASTA)	NCBI Sequence Viewer
	XP_017454657	(Get FASTA)	NCBI Sequence Viewer
	XP_038947763	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82043	(Get FASTA)	NCBI Sequence Viewer
	AAH99076	(Get FASTA)	NCBI Sequence Viewer
	EDL99568	(Get FASTA)	NCBI Sequence Viewer
	EDL99569	(Get FASTA)	NCBI Sequence Viewer
	EDL99570	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000083208
	ENSRNOP00000096414
GenBank Protein	Q641Z1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001094034 ⟸ NM_001100564

- UniProtKB:

Q4FZV6 (UniProtKB/Swiss-Prot), Q641Z1 (UniProtKB/Swiss-Prot), A6K5Z8 (UniProtKB/TrEMBL), A0A8L2Q0T4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVSINSTGDSTATPISTE
PITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKL
GNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRP
EVKPAIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAV
TGQTTQASPPVVTGRVLSQSAPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVK
SAVQTITVGGMSTSQFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNT
QPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQP
NLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGI
IPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP
EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKT
LMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQ
AEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC

hide sequence

RefSeq Acc Id:	XP_006250720 ⟸ XM_006250658
- Peptide Label:	isoform X2
- UniProtKB:	Q4FZV6 (UniProtKB/Swiss-Prot), Q641Z1 (UniProtKB/Swiss-Prot), A6K5Z8 (UniProtKB/TrEMBL), A0A8L2Q0T4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVSINSTGDSTATPISTE PITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKL GNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRP EVKPAIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAV TGQTTQASPPVVTGRVLSQSAPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVK SAVQTITVGGMSTSQFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNT QPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQP NLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGI IPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKT LMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQ AEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC hide sequence

RefSeq Acc Id:	XP_006250723 ⟸ XM_006250661
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6G8M1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVVPAEIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQSAPGTPSKTI TISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGMSTSQFKTIIPLAAAPNVQ PIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNTQPLQQAKPVVVNTTPVRMSVPFVQAQAVK QVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQY VTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFA NGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSG CLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDL LTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSV INSAGKAKSDPCAMHC hide sequence

RefSeq Acc Id:	XP_006250719 ⟸ XM_006250657
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZJ81 (UniProtKB/TrEMBL), A0A8L2Q0T4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELSFKQAPGHPSRSSATMEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEE IVSINSTGDSTATPISTEPITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTI SANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPG DAKLPPQQIKVVTIGGRPEVKPAIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTS GPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQSAPGTPSKTITISESGVIGSTLNSTTQ TPNKIAISPLKSPNKTVKSAVQTITVGGMSTSQFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTA TTAGSSAPPVSQSPSVNTQPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTS QPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSN FTGTSGIQTQARVSFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNL EHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSS ICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPF TFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC hide sequence

RefSeq Acc Id:	XP_006250721 ⟸ XM_006250659
- Peptide Label:	isoform X2
- UniProtKB:	Q4FZV6 (UniProtKB/Swiss-Prot), Q641Z1 (UniProtKB/Swiss-Prot), A6K5Z8 (UniProtKB/TrEMBL), A0A8L2Q0T4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVSINSTGDSTATPISTE PITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKL GNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRP EVKPAIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAV TGQTTQASPPVVTGRVLSQSAPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVK SAVQTITVGGMSTSQFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNT QPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQP NLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGI IPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKT LMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQ AEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC hide sequence

RefSeq Acc Id:

XP_008768244 ⟸ XM_008770022

- Peptide Label:

isoform X3

- Sequence:

show sequence

MELSFKQAPGHPSRSSATMEVVPAEIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPV
VTGRVLSQSAPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGM
STSQFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNTQPLQQAKPVVV
NTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVL
APAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGIIPSESASRPRK
PCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGK
EGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVR
VQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSK
AAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC

hide sequence

RefSeq Acc Id:	XP_017454657 ⟸ XM_017599168
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6G8M1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVVPAEIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQSAPGTPSKTI TISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGMSTSQFKTIIPLAAAPNVQ PIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNTQPLQQAKPVVVNTTPVRMSVPFVQAQAVK QVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQY VTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFA NGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSG CLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDL LTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSV INSAGKAKSDPCAMHC hide sequence

Ensembl Acc Id:

ENSRNOP00000003006 ⟸ ENSRNOT00000003006

RefSeq Acc Id:	XP_038947763 ⟸ XM_039091835
- Peptide Label:	isoform X5
- UniProtKB:	A6K600 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083208 ⟸ ENSRNOT00000119980

Ensembl Acc Id:

ENSRNOP00000096414 ⟸ ENSRNOT00000102075

Ensembl Acc Id:

ENSRNOP00000076578 ⟸ ENSRNOT00000106801

Ensembl Acc Id:

ENSRNOP00000093056 ⟸ ENSRNOT00000109020

Protein Domains

CRC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q641Z1-F1-model_v2	AlphaFold	Q641Z1	1-749	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311361	AgrOrtholog
BioCyc Gene	G2FUF-16401	BioCyc
Ensembl Genes	ENSRNOG00000002203	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000102075	ENTREZGENE
	ENSRNOT00000119980	ENTREZGENE
IMAGE_CLONE	IMAGE:7131638	IMAGE-MGC_LOAD
	IMAGE:7441982	IMAGE-MGC_LOAD
InterPro	CRC	UniProtKB/Swiss-Prot
	Lin-54_fam	UniProtKB/Swiss-Prot
	Tesmin/TSO1-like_CXC	UniProtKB/Swiss-Prot
KEGG Report	rno:305171	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116098	IMAGE-MGC_LOAD
	MGC:95188	IMAGE-MGC_LOAD
NCBI Gene	305171	ENTREZGENE
PANTHER	PROTEIN LIN-54 HOMOLOG	UniProtKB/Swiss-Prot
	PTHR12446	UniProtKB/Swiss-Prot
Pfam	TCR	UniProtKB/Swiss-Prot
PhenoGen	Lin54	PhenoGen
PROSITE	CRC	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000002203	RatGTEx
SMART	CXC	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZJ81	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AHW0_RAT	UniProtKB/TrEMBL
	A0A8I6ATA6_RAT	UniProtKB/TrEMBL
	A0A8I6G8M1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q0T4	ENTREZGENE, UniProtKB/TrEMBL
	A6K5Z8	ENTREZGENE, UniProtKB/TrEMBL
	A6K600	ENTREZGENE, UniProtKB/TrEMBL
	LIN54_RAT	UniProtKB/Swiss-Prot
	Q4FZV6	ENTREZGENE
	Q641Z1	ENTREZGENE
UniProt Secondary	Q4FZV6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-07-23	Lin54	lin-54 DREAM MuvB core complex component	Lin54	lin-54 homolog (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-12	Lin54	lin-54 homolog (C. elegans)	RGD1311361	similar to hypothetical protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1311361	similar to hypothetical protein	RGD1311361_predicted	similar to hypothetical protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311361_predicted	similar to hypothetical protein (predicted)	LOC305171_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305171_predicted	similar to hypothetical protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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