Rab39a (RAB39A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab39a (RAB39A, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab39a
Name: RAB39A, member RAS oncogene family
RGD ID: 1311286
Description: Predicted to enable G protein activity and GTP binding activity. Predicted to be involved in autophagosome-lysosome fusion; phagosome acidification; and phagosome-lysosome fusion. Predicted to be located in autolysosome membrane; late endosome membrane; and phagocytic vesicle membrane. Orthologous to human RAB39A (RAB39A, member RAS oncogene family); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315668; Rab39; RAB39, member RAS oncogene family; ras-related protein Rab-39A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,984,434 - 63,002,053 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl862,984,434 - 63,002,053 (-)EnsemblGRCr8
mRatBN7.2854,088,246 - 54,105,867 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,088,129 - 54,106,483 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx859,614,144 - 59,631,163 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,893,166 - 57,910,185 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,757,415 - 55,774,441 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,275,984 - 58,292,995 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,272,098 - 58,293,102 (-)Ensemblrn6Rnor6.0
Rnor_5.0856,857,848 - 56,874,859 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4857,153,452 - 57,173,146 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera853,579,185 - 53,596,351 (-)NCBICelera
RGSC_v3.1857,175,070 - 57,228,689 (-)NCBI
Cytogenetic Map8q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21255211  


Genomics

Comparative Map Data
Rab39a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,984,434 - 63,002,053 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl862,984,434 - 63,002,053 (-)EnsemblGRCr8
mRatBN7.2854,088,246 - 54,105,867 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,088,129 - 54,106,483 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx859,614,144 - 59,631,163 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,893,166 - 57,910,185 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,757,415 - 55,774,441 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,275,984 - 58,292,995 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,272,098 - 58,293,102 (-)Ensemblrn6Rnor6.0
Rnor_5.0856,857,848 - 56,874,859 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4857,153,452 - 57,173,146 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera853,579,185 - 53,596,351 (-)NCBICelera
RGSC_v3.1857,175,070 - 57,228,689 (-)NCBI
Cytogenetic Map8q24NCBI
RAB39A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,928,448 - 107,963,482 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,928,448 - 107,963,482 (+)Ensemblhg38GRCh38
GRCh3711107,799,174 - 107,834,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,304,487 - 107,339,418 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411107,304,486 - 107,339,416NCBI
Celera11104,953,680 - 104,988,614 (+)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,724,396 - 103,759,321 (+)NCBIHuRef
CHM1_111107,682,579 - 107,717,462 (+)NCBICHM1_1
T2T-CHM13v2.011107,935,548 - 107,970,540 (+)NCBIT2T-CHM13v2.0
Rab39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,595,410 - 53,617,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,595,410 - 53,617,532 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38953,684,110 - 53,706,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,684,110 - 53,706,232 (-)Ensemblmm10GRCm38
MGSCv37953,492,215 - 53,514,337 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36953,446,505 - 53,468,627 (-)NCBIMGSCv36mm8
Celera950,943,745 - 50,965,823 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
Rab39a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,224,074 - 10,240,270 (+)Ensembl
ChiLan1.0NW_00495541210,224,074 - 10,240,270 (+)NCBIChiLan1.0ChiLan1.0
RAB39A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,672,890 - 108,713,134 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111109,766,765 - 109,806,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011102,814,825 - 102,851,700 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,291,348 - 106,326,587 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,291,348 - 106,326,587 (+)EnsemblpanPan2panpan1.1
RAB39A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,516,541 - 24,546,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,519,240 - 24,546,606 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha524,440,396 - 24,472,421 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0524,543,996 - 24,576,058 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,548,303 - 24,576,419 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,591,329 - 24,623,183 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,492,978 - 24,524,815 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,551,508 - 24,583,580 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rab39a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,758,066 - 90,785,866 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551746,936 - 778,432 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936551750,940 - 778,432 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB39A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,341,339 - 36,403,654 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1936,341,339 - 36,403,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,452,457 - 40,480,041 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB39A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,353,125 - 99,388,429 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,353,210 - 99,387,262 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604326,567,743 - 26,602,263 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab39a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,679,225 - 2,710,545 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247842,679,281 - 2,709,514 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab39a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1847,676,461 - 47,694,941 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rab39a
77 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:67
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000011913
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat

Markers in Region
BE095551  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2854,105,918 - 54,106,100 (+)MAPPERmRatBN7.2
Rnor_6.0858,293,158 - 58,293,339NCBIRnor6.0
Rnor_5.0856,875,022 - 56,875,203UniSTSRnor5.0
RGSC_v3.4857,173,192 - 57,173,373UniSTSRGSC3.4
Celera853,596,514 - 53,596,695UniSTS
RH 3.4 Map8584.2UniSTS
Cytogenetic Map8q24UniSTS
RH134329  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2854,086,602 - 54,086,785 (+)MAPPERmRatBN7.2
Rnor_6.0858,273,843 - 58,274,025NCBIRnor6.0
Rnor_5.0856,855,707 - 56,855,889UniSTSRnor5.0
RGSC_v3.4857,153,876 - 57,154,058UniSTSRGSC3.4
Celera853,577,156 - 53,577,338UniSTS
RH 3.4 Map8582.5UniSTS
Cytogenetic Map8q24UniSTS
AW522779  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2854,105,691 - 54,105,856 (+)MAPPERmRatBN7.2
Rnor_6.0858,292,931 - 58,293,095NCBIRnor6.0
Rnor_5.0856,874,795 - 56,874,959UniSTSRnor5.0
RGSC_v3.4857,172,965 - 57,173,129UniSTSRGSC3.4
Celera853,596,287 - 53,596,451UniSTS
RH 3.4 Map8592.7UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 61 162 91 90 59 87 59 6 337 180 9 141 74 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011913   ⟹   ENSRNOP00000011913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl858,272,098 - 58,293,102 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118207   ⟹   ENSRNOP00000095397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl862,984,434 - 63,002,053 (-)Ensembl
mRatBN7.2 Ensembl854,088,129 - 54,106,483 (-)Ensembl
RefSeq Acc Id: NM_001108148   ⟹   NP_001101618
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,984,434 - 63,002,053 (-)NCBI
mRatBN7.2854,088,246 - 54,105,867 (-)NCBI
Rnor_6.0858,275,984 - 58,292,995 (-)NCBI
Rnor_5.0856,857,848 - 56,874,859 (-)NCBI
RGSC_v3.4857,153,452 - 57,173,146 (-)RGD
Celera853,579,185 - 53,596,351 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001101618 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL95522 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095397
  ENSRNOP00000095397.1
RefSeq Acc Id: NP_001101618   ⟸   NM_001108148
- UniProtKB: D3ZZP2 (UniProtKB/TrEMBL),   A6J4J9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011913   ⟸   ENSRNOT00000011913
Ensembl Acc Id: ENSRNOP00000095397   ⟸   ENSRNOT00000118207

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZP2-F1-model_v2 AlphaFold D3ZZP2 1-217 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695973
Promoter ID:EPDNEW_R6498
Type:single initiation site
Name:Rab39a_1
Description:RAB39A, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0858,293,126 - 58,293,186EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311286 AgrOrtholog
BioCyc Gene G2FUF-30423 BioCyc
Ensembl Genes ENSRNOG00000009008 Ensembl
  ENSRNOG00000063146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000118207 ENTREZGENE
  ENSRNOT00000118207.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab39 UniProtKB/TrEMBL
  Rab_GTPases_membrane_traffic UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTP-bd UniProtKB/TrEMBL
KEGG Report rno:315668 UniProtKB/TrEMBL
NCBI Gene 315668 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab39a PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009008 RatGTEx
  ENSRNOG00000063146 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A6J4J9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZP2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Rab39a  RAB39A, member RAS oncogene family  Rab39  RAB39, member RAS oncogene family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rab39  RAB39, member RAS oncogene family   Rab39_predicted  RAB39, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab39_predicted  RAB39, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED