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Gene: Champ1 (chromosome alignment maintaining phosphoprotein 1) Rattus norvegicus

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Symbol:

Champ1

Name:

chromosome alignment maintaining phosphoprotein 1

RGD ID:

1311283

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in attachment of spindle microtubules to kinetochore; protein localization to kinetochore; and protein localization to microtubule. Predicted to be located in kinetochore and nuclear body. Predicted to be active in nucleoplasm and spindle. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 40. Orthologous to human CHAMP1 (chromosome alignment maintaining phosphoprotein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

chromosome alignment-maintaining phosphoprotein 1; LOC306647; RGD1311283; similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H); Zfp828; zinc finger protein 828

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	82,436,172 - 82,447,144 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	82,434,823 - 82,458,984 (-)	Ensembl				GRCr8
mRatBN7.2	16	75,733,958 - 75,744,931 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	75,733,805 - 75,744,984 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	81,014,434 - 81,025,580 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	84,467,964 - 84,479,110 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	79,717,822 - 79,728,765 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	16	82,380,935 - 82,391,907 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	16	83,741,902 - 83,752,874 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	16	84,242,905 - 84,253,877 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	16	80,434,012 - 80,445,176 (-)	NCBI		F344_StmMcwi
Rnor_6.0	16	80,839,373 - 80,850,340 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	80,839,374 - 80,850,340 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	80,403,594 - 80,414,561 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	80,569,713 - 80,573,705 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	73,542,848 - 73,553,807 (-)	NCBI		Celera
RGSC_v3.1	16	80,571,519 - 80,573,925 (-)	NCBI
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 40 (ISO)

developmental and epileptic encephalopathy 11 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

CU-O LINKAGE (ISO)

cyclophosphamide (EXP)

deoxynivalenol (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

iron dichloride (ISO)

ivermectin (ISO)

methapyrilene (EXP)

N-nitrosodiethylamine (ISO)

ozone (ISO)

piperonyl butoxide (ISO)

quercetin (ISO)

rotenone (ISO)

senecionine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

attachment of mitotic spindle microtubules to kinetochore (IEA,ISO)

protein localization to kinetochore (ISO)

protein localization to microtubule (ISO)

sister chromatid biorientation (ISO)

Cellular Component

condensed chromosome (ISO)

kinetochore (IEA,ISO)

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO)

spindle (IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16176808	PMID:17070521	PMID:21063390

Genomics

Comparative Map Data

Champ1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	82,436,172 - 82,447,144 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	82,434,823 - 82,458,984 (-)	Ensembl				GRCr8
mRatBN7.2	16	75,733,958 - 75,744,931 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	75,733,805 - 75,744,984 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	81,014,434 - 81,025,580 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	84,467,964 - 84,479,110 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	79,717,822 - 79,728,765 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	16	82,380,935 - 82,391,907 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	16	83,741,902 - 83,752,874 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	16	84,242,905 - 84,253,877 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	16	80,434,012 - 80,445,176 (-)	NCBI		F344_StmMcwi
Rnor_6.0	16	80,839,373 - 80,850,340 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	80,839,374 - 80,850,340 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	80,403,594 - 80,414,561 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	80,569,713 - 80,573,705 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	73,542,848 - 73,553,807 (-)	NCBI		Celera
RGSC_v3.1	16	80,571,519 - 80,573,925 (-)	NCBI
Cytogenetic Map	16	q12.5	NCBI

CHAMP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	114,314,503 - 114,327,322 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	114,314,482 - 114,337,626 (+)	Ensembl			hg38	GRCh38
GRCh37	13	115,079,978 - 115,092,797 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	114,098,117 - 114,110,899 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	114,098,116 - 114,110,898	NCBI
Celera	13	95,752,593 - 95,765,430 (+)	NCBI		Celera
Cytogenetic Map	13	q34	NCBI
HuRef	13	95,342,333 - 95,355,170 (+)	NCBI		HuRef
CHM1_1	13	115,048,734 - 115,061,571 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	113,523,561 - 113,536,364 (+)	NCBI		T2T-CHM13v2.0

Champ1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	13,919,699 - 13,931,637 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	13,919,641 - 13,931,639 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	13,869,641 - 13,881,639 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	13,869,641 - 13,881,639 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	13,869,641 - 13,881,639 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	13,869,706 - 13,880,546 (+)	NCBI		MGSCv36	mm8
Celera	8	14,029,945 - 14,041,943 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	6.4	NCBI

Champ1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	4,445 - 6,877 (-)	Ensembl
ChiLan1.0	NW_004955404	3,228 - 14,695 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHAMP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	115,810,642 - 115,823,942 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	114,491,108 - 114,504,424 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	95,382,649 - 95,411,763 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	114,454,742 - 114,460,958 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	114,457,481 - 114,459,919 (+)	Ensembl			panPan2	panpan1.1

CHAMP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	61,367,007 - 61,378,111 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	61,368,049 - 61,378,111 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	61,078,383 - 61,089,567 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	62,053,743 - 62,064,929 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	62,052,677 - 62,068,946 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	61,491,295 - 61,502,477 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	61,497,927 - 61,508,902 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	61,526,892 - 61,538,074 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Champ1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	196,220,651 - 196,229,951 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937030	274,074 - 276,515 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004937030	268,400 - 279,341 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHAMP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	92,104,268 - 92,119,018 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	92,115,535 - 92,117,976 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666046	49,399,494 - 49,414,401 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Champ1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	111,025 - 113,526 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624793	109,854 - 121,461 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Champ1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	69,900,606 - 69,915,327 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Champ1
75 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	361
Count of miRNA genes:	224
Interacting mature miRNAs:	264
Transcripts:	ENSRNOT00000000124
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	59428714	91442908	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	59428714	91442908	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	59428714	91442908	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat

Markers in Region

AU049290

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	16	q12.5	UniSTS

RH129359

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,734,116 - 75,734,317 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,839,532 - 80,839,732	NCBI	Rnor6.0
Rnor_5.0	16	80,403,753 - 80,403,953	UniSTS	Rnor5.0
RGSC_v3.4	16	80,569,868 - 80,570,068	UniSTS	RGSC3.4
Celera	16	73,543,003 - 73,543,203	UniSTS
RH 3.4 Map	16	731.2	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001419089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000124 ⟹ ENSRNOP00000000124

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	82,436,063 - 82,440,056 (-)	Ensembl
mRatBN7.2 Ensembl	16	75,733,805 - 75,744,984 (-)	Ensembl
Rnor_6.0 Ensembl	16	80,839,374 - 80,850,340 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000171106 ⟹ ENSRNOP00000109900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	82,434,823 - 82,447,375 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172946 ⟹ ENSRNOP00000112545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	82,436,156 - 82,458,984 (-)	Ensembl

RefSeq Acc Id:

NM_001107329 ⟹ NP_001100799

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	82,436,172 - 82,447,144 (-)	NCBI
mRatBN7.2	16	75,733,958 - 75,744,931 (-)	NCBI
Dahl_SR_JrHsd	16	82,380,935 - 82,391,907 (-)	NCBI
Lyon_Normotensive	16	83,741,902 - 83,752,874 (-)	NCBI
Lyon_Hypertensive	16	84,242,905 - 84,253,877 (-)	NCBI
F344_StmMcwi	16	80,434,012 - 80,445,176 (-)	NCBI
Rnor_6.0	16	80,839,377 - 80,850,340 (-)	NCBI
Rnor_5.0	16	80,403,594 - 80,414,561 (-)	NCBI
RGSC_v3.4	16	80,569,713 - 80,573,705 (-)	RGD
Celera	16	73,542,848 - 73,553,807 (-)	RGD

Sequence:

show sequence

GTCCTGCGTCCAGCCGCCATTCCCGAGGCCGTGCGGCCAGCCCAGCGTTTCCTGTGGGCGTATC
CTCCTCTTCACTCCAGGACACCTTGCCGGAGGCAGTATCGAAGTCTTTCAAGCACAGTCCTGCG
GTGTGACAGAAGATGGAGGTGTGTCAGGAGCTTCGGAAACCAGCGATAAGCTTGGAGTGTGGCC
ACTGCAGTTTCAGAGGCACTGATTACGAGAATGTGCAGATTCACATGGGCACCATCCACCCTGA
GTTCTGTGATGATATGGATGCCGGGGGACTGGGCAAGCTGATCTTCTACCAGAAGAGTGCAAAG
CTCTTCCACTGCCATAAGTGTTTCTTCACCAGCAAGATGTACTCCAATGTGTACCATCACATCA
CAGCCAAGCACGCAGCCTCCGACAAGTGGAGTGAGCCGCCAAAAGAGCAGCTGAGCAAAGAGAC
AGAGTCTGGGAAAAGCCCTTCCCTTCCCGAGCAACAGAACACAGCCTTTGACCCAGCAGAAGTG
AGGCCCGCTCCAACCCTCCCCATAGAAACACAGAAAACTAGTCCGAGTTTGTCTCCAGAGTCCC
AAGCGTCTGTTCCTCCGGTTCTGGAGCCTCAGAGCTCTGCTCCTGTTATTTCTCCCGAGCCACA
AGCTCCTTGTCTTCCTGCTGAGGCCTCAAAAACTGCTCCTGTTTCTTCCCCTGAGTGTCTAGAC
CCACCCTGTGAGCTTCCTGAGCTGGAGAAGCCTGAGCCAGTCCCTTCTCCTGAGTCAGTGAAGT
CTGCTCTTGTCAGCTGCAAACCCCAAAGACACTCTCCCTTTGCAGATACAGGGGCTCCCCCTTC
AGCCTTGTCTCCAGAGTCACCAGTTCTGGCCACTTCCCCTGAACCTTGGGGGTCATCCCTCACT
GCATCTCCAGAGTCTCGGAAGCCAGTGAGGACTGCCTCACCTGAGCCAAGAAAGCCATCCCCTT
CAGAGTCTCCTGAACTTTGGAAGCCATTTCCTGCCGTCACTTCAGAGCCACGGAGACCAACCCC
AGCAGTGTCACCAGGGTCCTGGAAGCCAGGACCACCTGGCTCTCCTAGACCTTGGAAGTCCAGC
CCTTCAGCAGCATCAGGAGCGTGGAAGTCATCGAAGCCTGCCCCACCTATGTCTCCTGGACCCT
GGAAGCCAATACCTTCTGTATCTCCTGGGCCTTGGAAACCTGCTCCATCGATGTCCACAGCATC
CTGGAAATCTTCAGTCTCATCTGGTTCCTGGAAAACACCACCCACATCTCCGGAGTCTTGGAAG
TCTGGTCCACCTGAACTCCGAAAGACAGCCCTTCCCTTGTCGCCTGAGCATTGGAAGGCAGTGC
CCCCTGTGTCTCCTGAGCTTCGCAGACCAGGCCCGCCACTTTCCCCAGAGATCCGAAGTCCAGC
AGGTTCTCCAGAGCTCAGGAAGCCTTCAGGATCACCAGACCTGTGGAAGCTTTCTCCTGAGCAG
CGGAAAACTTCTCCTGCTTCACTCGATTTCCCTGAGCCCCAGAAAAGTTCTTGTGGTAGTTCTC
CTGATCTCTGGAAGTCTTCCTTCATTATGGACTCTCAGAAGCCTAACATCTTCTCTGAGACGAG
GAAACATGCTGCTTCTGGCTCGTCTGAGTCACCGAAGGTAGCCTCAGACATATGGAAGCCTGTC
CTGTCTATCGATGCTGAGCCTAGGAAGTCCACACTGTTTCCTGAGCCCACCAAAGCAGTCCTTC
CTGCTTCTCCCGAGCCACGGAAACGAGCACTTTTCCCAGAGTCCCGGAAGCATGTACTTTTACC
TGAGCTCCCCAAATCCGCTGTGTTCTCAGAGGCCCAGAAGGCCACTGAGCTCAGTGAGGAAGCA
CAACTTGAAGCTGTGGGTGATGCAAAGTGTGAGAGTCTGGTCCAGGAGGGGCTTCTGGCCACAC
CCAAGAGACTGTTAGACGATGCCCTATTTCCTTCTACAAAGAAGCTCAAGAAGGACAGCCAGGA
GAGCTCGGATGCTGAGCTCAGCAGCAGTGAATTCAGAGCAGATTTAGACCCCTTGGACATGAAG
GGCCAGGAGTCCAGCAGTGATCAGGAACAGGTGGATGTGGAATCTATCGATTTTAGCAAAGAGA
ACAAAATGGAGATGGGTAGTGCAGAGCAGGCCAAAAATGTGCTTCAGTTCACGGAGGAGAAGGA
AGCCTTCATCTCTGAAGAGGAGATTGCAAAGTACATGAAACGTGGAAAAGGGAAATATTTCTGC
AAAATCTGTTGTTGTCGGGCTATGAAGAAAGGCGCTGTCCTGCACCACTTGGTTAATAAGCACA
ATGTCCACAGCCCATACAAGTGCACAATTTGTGGGAAAGCATTTCTTTTGGAGTCTCTCCTTAA
AAATCATGTAGCAGCCCATGGGCAGAGCTTACTTAAATGTCCACGCTGTAATTTTGAATCCAAT
TTCCCAAGAGGCTTTAAGAAACATTTAACCCACTGTCAGAGCCGGCACAGTGAAGAGGCAAATA
AGAAGCTGGTGGAAGCTCTTGAATCGCCATTGGAGGAGCCACAGATGTGATTTTCAAACACTGA
CCCCGCCCTCCAGTGTTGCTTGCCAAACTCTTAGGTGTTGAGTAGCCTAAACGGATCGGTAGTC
GGAGTGTGTGTAGTGTGTGTCCTGTTTGTCTGAGTAGTGTTACAGAGAGTAAGTACTTGGTTAT
TTTTTCATATGATCTCTTGTTTATGTGACTGGCTATTTTATAAGTCAATACATTTCTGTTATAG
ATTACAGATGGATATAACTCATTTTCTTTAAGCTTATTTTAGTCATAATACAAGGAGTAGGGGA
AAGTAGGCAAGCCATTTAGTAAACGAGCAAATTTAAACCCAATCAGAGGCTTTCTCCTCCACTG
CGGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTG
TCTGTGTGTCTGTCTGTGTGTGTGTGCATGTGTGACTGATTTCAGAGCATAGGAATTATTACAT
GAGGCTCAGTGCAGAGCCTCTCCCAGCATGTCTCGCATACTAACCGTTCCAGGGTTCTATCCCT
AGTACTTAAAAAAAAAAACAAAAAAACAAAAACGGGATGTGTGAGAACTGAGCATGAAGAGTAA
ATTTGAGGAAAATGTTGTTAAATGTACTTTTGAACCATGTCTTATTTTTTCATGTAAAATAGTT
TATAAATCTTTAATATTTTCTTGATGTTCATTAATGTTTGTTACAGAGCAGCGGTTCTCAACCT
TGGGGTGGAAAGACGCTTTCACAGAAAGCACAGATATTTACATTATGATGATAGCAAATTATTT
ATAAAGCAGCAGTGAAAATAATGTTGTGGTTGGGGTCACCGCTGTATGAAGAACACATTGAAGG
GTCACGGCATTAGGAAGGGTGAGAGTGCTGCTGAAGAGAGTTGGAACCTTATGGTTGCTGGTTT
TCTGCTGGTAGGACAGCCTCGTGAGCTTTTAAAGCAGTTTTGGTATTTTCTGCAGGCTGAGAAG
GCCACGTGATTAAGGACACCACTTCCCTCTAGTTCCTTCCAGTGAAGTCTTCCTTGTGGGGCTT
GCCCTTCACTGCCCTGCCAGCTCCCATCAGCAGATGATCTTTAATTGCCAAATGTGCTAGTGTT
TGTACCTCCTAGGCTGGGCCTTGTGGACTTTGTGTTGGGGCTCGAGACCCGAGTAGTGAGTGGG
AGCTGAAAGTCTTCCGGATTCGCATGGGACGTTGACGAGCAGTGCGGTCTGGCAGCACTGCTCA
CCGACTCCGACTCGGCCACTGGGGAGCTGGGTTGGAGAGGGTTCACTTGGGCCCCGCCTGGGCA
GCACAGTGACATCCTGCCTCAAAAAGCATTCCTGTCTGAAAACAGTTTGATTTTGTTTCACATG
TTTTGCCATTGTAAATACCTTGTATCTCTAACATATTTTGTTAAATGTGTACCGACCAAATTAA
AACGGCTTTCAC

hide sequence

RefSeq Acc Id:

NM_001419089 ⟹ NP_001406018

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	82,436,172 - 82,447,144 (-)	NCBI
mRatBN7.2	16	75,733,958 - 75,744,931 (-)	NCBI
Dahl_SR_JrHsd	16	82,380,935 - 82,391,907 (-)	NCBI
Lyon_Normotensive	16	83,741,902 - 83,752,874 (-)	NCBI
Lyon_Hypertensive	16	84,242,905 - 84,253,877 (-)	NCBI
F344_StmMcwi	16	80,434,012 - 80,445,176 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100799	(Get FASTA)	NCBI Sequence Viewer
	NP_001406018	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68662	(Get FASTA)	NCBI Sequence Viewer
	EDM08915	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000124
	ENSRNOP00000000124.3
	ENSRNOP00000109900
	ENSRNOP00000109900.1
	ENSRNOP00000112545.1

RefSeq Acc Id:

NP_001100799 ⟸ NM_001107329

- UniProtKB:

B5DEG7 (UniProtKB/TrEMBL), A6IWF8 (UniProtKB/TrEMBL), F7EUM4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVCQELRKPAISLECGHCSFRGTDYENVQIHMGTIHPEFCDDMDAGGLGKLIFYQKSAKLFHC
HKCFFTSKMYSNVYHHITAKHAASDKWSEPPKEQLSKETESGKSPSLPEQQNTAFDPAEVRPAP
TLPIETQKTSPSLSPESQASVPPVLEPQSSAPVISPEPQAPCLPAEASKTAPVSSPECLDPPCE
LPELEKPEPVPSPESVKSALVSCKPQRHSPFADTGAPPSALSPESPVLATSPEPWGSSLTASPE
SRKPVRTASPEPRKPSPSESPELWKPFPAVTSEPRRPTPAVSPGSWKPGPPGSPRPWKSSPSAA
SGAWKSSKPAPPMSPGPWKPIPSVSPGPWKPAPSMSTASWKSSVSSGSWKTPPTSPESWKSGPP
ELRKTALPLSPEHWKAVPPVSPELRRPGPPLSPEIRSPAGSPELRKPSGSPDLWKLSPEQRKTS
PASLDFPEPQKSSCGSSPDLWKSSFIMDSQKPNIFSETRKHAASGSSESPKVASDIWKPVLSID
AEPRKSTLFPEPTKAVLPASPEPRKRALFPESRKHVLLPELPKSAVFSEAQKATELSEEAQLEA
VGDAKCESLVQEGLLATPKRLLDDALFPSTKKLKKDSQESSDAELSSSEFRADLDPLDMKGQES
SSDQEQVDVESIDFSKENKMEMGSAEQAKNVLQFTEEKEAFISEEEIAKYMKRGKGKYFCKICC
CRAMKKGAVLHHLVNKHNVHSPYKCTICGKAFLLESLLKNHVAAHGQSLLKCPRCNFESNFPRG
FKKHLTHCQSRHSEEANKKLVEALESPLEEPQM

hide sequence

Ensembl Acc Id:

ENSRNOP00000000124 ⟸ ENSRNOT00000000124

RefSeq Acc Id:	NP_001406018 ⟸ NM_001419089
- UniProtKB:	B5DEG7 (UniProtKB/TrEMBL), A6IWF8 (UniProtKB/TrEMBL), F7EUM4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112545 ⟸ ENSRNOT00000172946

Ensembl Acc Id:

ENSRNOP00000109900 ⟸ ENSRNOT00000171106

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEG7-F1-model_v2	AlphaFold	B5DEG7	1-801	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311283	AgrOrtholog
BioCyc Gene	G2FUF-10737	BioCyc
Ensembl Genes	ENSRNOG00000000112	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000124	ENTREZGENE
	ENSRNOT00000000124.7	UniProtKB/TrEMBL
	ENSRNOT00000171106	ENTREZGENE
	ENSRNOT00000171106.1	UniProtKB/TrEMBL
	ENSRNOT00000172946.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	CAMP	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:306647	UniProtKB/TrEMBL
NCBI Gene	306647	ENTREZGENE
PANTHER	CHROMOSOME ALIGNMENT-MAINTAINING PHOSPHOPROTEIN 1	UniProtKB/TrEMBL
	PTHR37354	UniProtKB/TrEMBL
PhenoGen	Champ1	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000112	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A6IWF8	ENTREZGENE, UniProtKB/TrEMBL
	B5DEG7	ENTREZGENE
	F7EUM4	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B5DEG7	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-27	Champ1	chromosome alignment maintaining phosphoprotein 1	Zfp828	zinc finger protein 828	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-31	Zfp828	zinc finger protein 828	RGD1311283_predicted	similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1311283_predicted	similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) (predicted)	LOC306647_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC306647_predicted	similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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