C8h11orf65 (similar to human chromosome 11 open reading frame 65) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: C8h11orf65 (similar to human chromosome 11 open reading frame 65) Rattus norvegicus
Analyze
Symbol: C8h11orf65
Name: similar to human chromosome 11 open reading frame 65
RGD ID: 1311251
Description: Predicted to be involved in negative regulation of mitochondrial fission and negative regulation of protein targeting to mitochondrion. Predicted to be located in cytosol and mitochondrial outer membrane. Orthologous to human C11orf65 (chromosome 11 open reading frame 65); INTERACTS WITH (+)-schisandrin B; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC315665; LOC315665; Mfi; MGC108787; mitochondrial fission factor interactor; RGD1311251; similar to RIKEN cDNA 4930550C14; uncharacterized protein C11orf65 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,692,123 - 62,720,951 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl862,692,568 - 62,720,946 (+)EnsemblGRCr8
mRatBN7.2853,796,033 - 53,825,277 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl853,796,366 - 53,824,748 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx859,322,231 - 59,350,124 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,601,255 - 57,629,152 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,465,487 - 55,493,388 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0857,983,168 - 58,012,474 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl857,983,556 - 58,011,962 (+)Ensemblrn6Rnor6.0
Rnor_5.0856,565,473 - 56,595,039 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4856,860,023 - 56,888,406 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera853,287,078 - 53,315,462 (+)NCBICelera
RGSC_v3.1856,879,076 - 56,907,455 (+)NCBI
Cytogenetic Map8q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO,ISS)
mitochondrial outer membrane  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:30059978  


Genomics

Comparative Map Data
C8h11orf65
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,692,123 - 62,720,951 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl862,692,568 - 62,720,946 (+)EnsemblGRCr8
mRatBN7.2853,796,033 - 53,825,277 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl853,796,366 - 53,824,748 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx859,322,231 - 59,350,124 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,601,255 - 57,629,152 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,465,487 - 55,493,388 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0857,983,168 - 58,012,474 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl857,983,556 - 58,011,962 (+)Ensemblrn6Rnor6.0
Rnor_5.0856,565,473 - 56,595,039 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4856,860,023 - 56,888,406 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera853,287,078 - 53,315,462 (+)NCBICelera
RGSC_v3.1856,879,076 - 56,907,455 (+)NCBI
Cytogenetic Map8q24NCBI
C11orf65
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811108,308,519 - 108,469,881 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11108,308,519 - 108,467,531 (-)Ensemblhg38GRCh38
GRCh3711108,179,246 - 108,338,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,758,937 - 107,843,468 (-)NCBIBuild 36Build 36hg18NCBI36
Celera11105,408,665 - 105,493,182 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11104,179,345 - 104,263,741 (-)NCBIHuRef
CHM1_111108,136,851 - 108,221,311 (-)NCBICHM1_1
T2T-CHM13v2.011108,316,028 - 108,477,364 (-)NCBIT2T-CHM13v2.0
4930550C14Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,313,814 - 53,345,726 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,313,625 - 53,345,702 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38953,402,713 - 53,434,426 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,402,325 - 53,434,402 (+)Ensemblmm10GRCm38
MGSCv37953,213,391 - 53,240,908 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36953,167,681 - 53,195,198 (+)NCBIMGSCv36mm8
Celera950,665,022 - 50,692,543 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
CUNH11orf65
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,533,441 - 10,567,612 (-)Ensembl
ChiLan1.0NW_00495541210,533,174 - 10,567,364 (-)NCBIChiLan1.0ChiLan1.0
C9H11orf65
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29109,053,720 - 109,210,650 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111110,141,710 - 110,303,415 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011103,195,244 - 103,352,211 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,669,823 - 106,822,761 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,670,277 - 106,817,886 (-)EnsemblpanPan2panpan1.1
C5H11orf65
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,106,696 - 24,166,686 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,121,409 - 24,166,291 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha524,033,219 - 24,092,527 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0524,136,299 - 24,196,155 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,150,977 - 24,195,763 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,184,097 - 24,243,673 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,085,434 - 24,145,083 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,143,466 - 24,203,265 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH11orf65
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494791,193,490 - 91,234,492 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551305,611 - 351,063 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936551305,617 - 343,369 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C9H11orf65
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,776,897 - 36,849,710 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1936,768,819 - 36,855,318 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,954,894 - 41,041,842 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C1H11orf65
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,804,191 - 99,879,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,804,218 - 99,827,182 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604326,082,356 - 26,161,093 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf65
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247843,084,385 - 3,145,517 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247843,083,664 - 3,144,017 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
C8H11orf65
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1847,390,754 - 47,416,326 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C8h11orf65
326 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:34
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000009562
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat

Markers in Region
D8Rat113  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8862,708,910 - 62,709,118 (+)Marker Load Pipeline
mRatBN7.2853,812,710 - 53,812,918 (+)MAPPERmRatBN7.2
Rnor_6.0857,999,910 - 58,000,117NCBIRnor6.0
Rnor_5.0856,582,250 - 56,582,457UniSTSRnor5.0
RGSC_v3.4856,876,365 - 56,876,573RGDRGSC3.4
RGSC_v3.4856,876,366 - 56,876,573UniSTSRGSC3.4
Celera853,303,422 - 53,303,629UniSTS
RGSC_v3.1856,895,420 - 56,895,627RGD
RH 3.4 Map8582.4UniSTS
RH 3.4 Map8582.4RGD
RH 2.0 Map8450.0RGD
SHRSP x BN Map841.2RGD
Cytogenetic Map8q24UniSTS
RH128975  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2853,795,120 - 53,795,334 (+)MAPPERmRatBN7.2
Rnor_6.0857,982,322 - 57,982,535NCBIRnor6.0
Rnor_5.0856,564,584 - 56,564,797UniSTSRnor5.0
RGSC_v3.4856,858,778 - 56,858,991UniSTSRGSC3.4
Celera853,285,833 - 53,286,046UniSTS
RH 3.4 Map8582.5UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 7 65 153 91 90 59 28 59 6 280 120 11 131 79 92 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000009562   ⟹   ENSRNOP00000009562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl862,692,568 - 62,720,946 (+)Ensembl
mRatBN7.2 Ensembl853,796,366 - 53,824,748 (+)Ensembl
Rnor_6.0 Ensembl857,983,556 - 58,011,962 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100103   ⟹   ENSRNOP00000087346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl862,701,010 - 62,720,946 (+)Ensembl
mRatBN7.2 Ensembl853,804,810 - 53,824,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106333   ⟹   ENSRNOP00000090888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl862,694,028 - 62,720,946 (+)Ensembl
mRatBN7.2 Ensembl853,802,395 - 53,824,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107667   ⟹   ENSRNOP00000090340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl862,692,568 - 62,720,946 (+)Ensembl
mRatBN7.2 Ensembl853,796,366 - 53,824,748 (+)Ensembl
RefSeq Acc Id: NM_001024265   ⟹   NP_001019436
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,692,568 - 62,720,951 (+)NCBI
mRatBN7.2853,796,366 - 53,824,753 (+)NCBI
Rnor_6.0857,983,567 - 58,011,950 (+)NCBI
Rnor_5.0856,565,473 - 56,595,039 (+)NCBI
RGSC_v3.4856,860,023 - 56,888,406 (+)RGD
Celera853,287,078 - 53,315,462 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243077   ⟹   XP_006243139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,692,123 - 62,720,951 (+)NCBI
mRatBN7.2853,796,033 - 53,825,277 (+)NCBI
Rnor_6.0857,983,168 - 58,012,474 (+)NCBI
Rnor_5.0856,565,473 - 56,595,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243078   ⟹   XP_006243140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,694,693 - 62,720,951 (+)NCBI
mRatBN7.2853,798,477 - 53,825,277 (+)NCBI
Rnor_6.0857,985,645 - 58,012,474 (+)NCBI
Rnor_5.0856,565,473 - 56,595,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243079   ⟹   XP_006243141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,694,656 - 62,720,951 (+)NCBI
mRatBN7.2853,798,452 - 53,825,277 (+)NCBI
Rnor_6.0857,985,645 - 58,012,474 (+)NCBI
Rnor_5.0856,565,473 - 56,595,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243080   ⟹   XP_006243142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,694,599 - 62,720,951 (+)NCBI
mRatBN7.2853,798,431 - 53,825,277 (+)NCBI
Rnor_6.0857,985,631 - 58,012,474 (+)NCBI
Rnor_5.0856,565,473 - 56,595,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063265464   ⟹   XP_063121534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8862,692,643 - 62,720,951 (+)NCBI
RefSeq Acc Id: NP_001019436   ⟸   NM_001024265
- UniProtKB: Q569B9 (UniProtKB/Swiss-Prot),   A6J4J2 (UniProtKB/TrEMBL),   A0A8I6GIL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243139   ⟸   XM_006243077
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABL8 (UniProtKB/TrEMBL),   A0A0H2UHE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243142   ⟸   XM_006243080
- Peptide Label: isoform X2
- UniProtKB: Q569B9 (UniProtKB/Swiss-Prot),   A6J4J2 (UniProtKB/TrEMBL),   A0A8I6GIL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243140   ⟸   XM_006243078
- Peptide Label: isoform X2
- UniProtKB: Q569B9 (UniProtKB/Swiss-Prot),   A6J4J2 (UniProtKB/TrEMBL),   A0A8I6GIL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243141   ⟸   XM_006243079
- Peptide Label: isoform X2
- UniProtKB: Q569B9 (UniProtKB/Swiss-Prot),   A6J4J2 (UniProtKB/TrEMBL),   A0A8I6GIL5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009562   ⟸   ENSRNOT00000009562
Ensembl Acc Id: ENSRNOP00000087346   ⟸   ENSRNOT00000100103
Ensembl Acc Id: ENSRNOP00000090888   ⟸   ENSRNOT00000106333
Ensembl Acc Id: ENSRNOP00000090340   ⟸   ENSRNOT00000107667
RefSeq Acc Id: XP_063121534   ⟸   XM_063265464
- Peptide Label: isoform X2
- UniProtKB: Q569B9 (UniProtKB/Swiss-Prot),   A6J4J2 (UniProtKB/TrEMBL),   A0A8I6GIL5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q569B9-F1-model_v2 AlphaFold Q569B9 1-305 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695969
Promoter ID:EPDNEW_R6494
Type:single initiation site
Name:RGD1311251_1
Description:similar to RIKEN cDNA 4930550C14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0857,983,640 - 57,983,700EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311251 AgrOrtholog
BioCyc Gene G2FUF-30437 BioCyc
Ensembl Genes ENSRNOG00000007266 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000009562 ENTREZGENE
  ENSRNOT00000106333 ENTREZGENE
  ENSRNOT00000107667 ENTREZGENE
IMAGE_CLONE IMAGE:7321330 IMAGE-MGC_LOAD
KEGG Report rno:315665 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108787 IMAGE-MGC_LOAD
NCBI Gene 315665 ENTREZGENE
PANTHER NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 UniProtKB/Swiss-Prot
  PROTEIN MFI UniProtKB/Swiss-Prot
PhenoGen C8h11orf65 PhenoGen
RatGTEx ENSRNOG00000007266 RatGTEx
UniProt A0A0H2UHE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8B5_RAT UniProtKB/TrEMBL
  A0A8I6ABL8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIL5 ENTREZGENE, UniProtKB/TrEMBL
  A6J4J2 ENTREZGENE, UniProtKB/TrEMBL
  CK065_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-24 C8h11orf65  similar to human chromosome 11 open reading frame 65  RGD1311251  similar to RIKEN cDNA 4930550C14  Name and Symbol changed 629549 APPROVED
2005-12-06 RGD1311251  similar to RIKEN cDNA 4930550C14  RGD1311251_predicted  similar to RIKEN cDNA 4930550C14 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311251_predicted  similar to RIKEN cDNA 4930550C14 (predicted)  LOC315665_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315665_predicted  similar to RIKEN cDNA 4930550C14 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL