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Gene: Vps13b (vacuolar protein sorting 13 homolog B) Rattus norvegicus

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Symbol:

Vps13b

Name:

vacuolar protein sorting 13 homolog B

RGD ID:

1311183

Description:

Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including acrosome assembly; maintenance of lens transparency; and slow endocytic recycling. Predicted to act upstream of or within several processes, including dentate gyrus development; head morphogenesis; and social behavior. Predicted to be located in bounding membrane of organelle and trans-Golgi network membrane. Human ortholog(s) of this gene implicated in Cohen syndrome. Orthologous to human VPS13B (vacuolar protein sorting 13 homolog B); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Coh1; Cohen syndrome homolog 1; Cohh1; intermembrane lipid transfer protein VPS13B; LOC102555534; LOC315036; vacuolar protein sorting 13 homolog B (yeast); vacuolar protein sorting-associated protein 13B; vacuolar protein sorting-associated protein 13B-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	68,436,996 - 69,013,574 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	68,443,655 - 69,013,574 (+)	Ensembl				GRCr8
mRatBN7.2	7	66,557,862 - 67,128,429 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	66,558,471 - 67,128,429 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	68,447,001 - 69,016,940 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	70,649,629 - 71,219,546 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	70,517,478 - 71,087,415 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	74,118,834 - 74,722,341 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	75,852,610 - 75,858,812 (+)	NCBI			rn6	Rnor6.0
Rnor_5.0	7	74,281,753 - 74,879,196 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	70,839,616 - 71,464,951 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	63,647,181 - 64,211,271 (+)	NCBI		Celera
RGSC_v3.1	7	70,860,765 - 71,486,400 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

cataract (ISS)

Cohen syndrome (ISO,ISS)

Cutis Verticis Gyrata, Retinitis Pigmentosa, and Sensorineural Deafness (ISO)

Developmental Disabilities (ISO)

Dwarfism (ISO)

Eye Abnormalities (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

long QT syndrome (ISO)

microcephaly (ISO)

Multiple Abnormalities (ISO)

myopia (ISO)

Nervous System Malformations (ISO)

Pituitary Stalk Interruption Syndrome (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO)

schizophrenia (ISO)

severe congenital neutropenia 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

cisplatin (ISO)

clobetasol (ISO)

cobalt dichloride (EXP)

copper(II) chloride (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

Heliotrine (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (ISO)

irinotecan (EXP)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP,ISO)

methotrexate (ISO)

O-methyleugenol (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

resveratrol (ISO)

senecionine (ISO)

Senkirkine (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP,ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

tungsten (ISO)

uranium atom (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome assembly (IEA,ISO)

adipose tissue development (IEA,ISO)

brain development (ISO)

central nervous system development (IEA,ISO)

dentate gyrus development (ISO)

Golgi organization (IEA,ISO)

Golgi reassembly (ISO)

head morphogenesis (ISO)

lipid transport (IEA)

maintenance of lens transparency (IEA,ISO)

memory (ISO)

multicellular organism growth (ISO)

muscle organ development (ISO)

nervous system development (IEA,ISO)

slow endocytic recycling (IEA,ISO)

social behavior (ISO)

vesicle-mediated transport (IEA,ISO)

Cellular Component

acrosomal membrane (IEA,ISO)

cis-Golgi network membrane (ISO)

endoplasmic reticulum-Golgi intermediate compartment membrane (ISO)

Golgi membrane (IEA,ISO)

trans-Golgi network membrane (ISO)

Molecular Function

phosphatidylinositol-3-phosphate binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12730828	PMID:15632090

Genomics

Comparative Map Data

Vps13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	68,436,996 - 69,013,574 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	68,443,655 - 69,013,574 (+)	Ensembl				GRCr8
mRatBN7.2	7	66,557,862 - 67,128,429 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	66,558,471 - 67,128,429 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	68,447,001 - 69,016,940 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	70,649,629 - 71,219,546 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	70,517,478 - 71,087,415 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	74,118,834 - 74,722,341 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	75,852,610 - 75,858,812 (+)	NCBI			rn6	Rnor6.0
Rnor_5.0	7	74,281,753 - 74,879,196 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	70,839,616 - 71,464,951 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	63,647,181 - 64,211,271 (+)	NCBI		Celera
RGSC_v3.1	7	70,860,765 - 71,486,400 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

VPS13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	99,013,274 - 99,877,580 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	99,013,266 - 99,877,580 (+)	Ensembl			hg38	GRCh38
GRCh37	8	100,025,502 - 100,889,808 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	100,094,670 - 100,958,984 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	100,094,669 - 100,659,188	NCBI
Celera	8	96,211,225 - 97,075,608 (+)	NCBI		Celera
Cytogenetic Map	8	q22.2	NCBI
HuRef	8	95,228,270 - 96,092,444 (+)	NCBI		HuRef
CHM1_1	8	100,066,127 - 100,930,595 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	100,138,009 - 101,002,539 (+)	NCBI		T2T-CHM13v2.0

Vps13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	35,371,264 - 35,931,375 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	35,371,306 - 35,931,375 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	35,371,118 - 35,931,229 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	35,371,160 - 35,931,229 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	35,301,301 - 35,860,984 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	35,315,749 - 35,875,818 (+)	NCBI		MGSCv36	mm8
Celera	15	35,993,318 - 36,557,254 (+)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI
cM Map	15	14.46	NCBI

Vps13b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	14,570,904 - 15,227,877 (+)	Ensembl
ChiLan1.0	NW_004955417	14,570,399 - 15,228,106 (+)	NCBI	ChiLan1.0	ChiLan1.0

VPS13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	116,363,832 - 117,232,626 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	91,905,413 - 92,771,553 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	95,659,443 - 96,525,316 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	97,837,674 - 98,700,162 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	97,860,720 - 98,698,271 (+)	Ensembl			panPan2	panpan1.1

VPS13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	1,101,226 - 1,834,933 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	1,101,610 - 1,871,225 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	1,096,682 - 1,830,492 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	1,253,509 - 1,988,060 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	1,253,722 - 1,988,056 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	1,096,002 - 1,830,212 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	1,203,819 - 1,943,474 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	1,210,806 - 1,944,933 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vps13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	35,855,538 - 36,526,292 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	43,281,469 - 43,951,805 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	43,281,905 - 43,952,523 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VPS13B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	37,090,936 - 37,820,419 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	37,085,929 - 37,821,159 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	40,006,383 - 40,389,291 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VPS13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	93,899,666 - 94,737,123 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	93,901,284 - 94,735,262 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	45,953,328 - 46,821,705 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vps13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	6,102,674 - 6,864,817 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624763	6,101,943 - 6,866,457 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vps13b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	208,955,272 - 209,499,265 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vps13b
3454 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	329
Count of miRNA genes:	218
Interacting mature miRNAs:	252
Transcripts:	ENSRNOT00000033021
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

DXRat132

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	55,054,094 - 55,054,132 (-)	MAPPER	mRatBN7.2
mRatBN7.2	X	116,926,119 - 116,926,150 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	74,457,911 - 74,458,114	NCBI	Rnor6.0
Rnor_5.0	7	74,623,381 - 74,623,584	UniSTS	Rnor5.0
RGSC_v3.4	X	28,213,292 - 28,213,492	RGD	RGSC3.4
RGSC_v3.4	X	28,213,293 - 28,213,496	UniSTS	RGSC3.4
Celera	X	16,965,657 - 16,965,860	UniSTS
RGSC_v3.1	X	28,266,761 - 28,266,961	RGD
SHRSP x BN Map	X	3.51	RGD
SHRSP x BN Map	X	3.51	UniSTS
Cytogenetic Map	7	q22	UniSTS

D7Got258

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	66,951,413 - 66,951,646 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	74,536,115 - 74,536,347	NCBI	Rnor6.0
Rnor_5.0	7	74,695,125 - 74,695,357	UniSTS	Rnor5.0
RGSC_v3.4	7	71,280,211 - 71,280,443	UniSTS	RGSC3.4
Celera	7	64,035,468 - 64,035,700	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH130106

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	67,127,249 - 67,127,438 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	74,721,162 - 74,721,350	NCBI	Rnor6.0
Rnor_5.0	7	74,878,017 - 74,878,205	UniSTS	Rnor5.0
RGSC_v3.4	7	71,463,775 - 71,463,963	UniSTS	RGSC3.4
Celera	7	64,210,092 - 64,210,280	UniSTS
RH 3.4 Map	7	639.8	UniSTS
Cytogenetic Map	7	q22	UniSTS

28.MHAa64g4.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	66,995,869 - 66,996,007 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	74,582,552 - 74,582,689	NCBI	Rnor6.0
Rnor_5.0	7	74,742,186 - 74,742,323	UniSTS	Rnor5.0
RGSC_v3.4	7	71,331,251 - 71,331,388	UniSTS	RGSC3.4
Celera	7	64,078,535 - 64,078,672	UniSTS
Cytogenetic Map	7	q22	UniSTS

D15Mit56

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	67,007,877 - 67,007,973 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	74,595,159 - 74,595,254	NCBI	Rnor6.0
Rnor_5.0	7	74,753,832 - 74,753,927	UniSTS	Rnor5.0
RGSC_v3.4	7	71,344,190 - 71,344,285	UniSTS	RGSC3.4
Celera	7	64,090,973 - 64,091,068	UniSTS
Cytogenetic Map	7	q22	UniSTS

BI302144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	66,569,796 - 66,569,977 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	74,130,157 - 74,130,337	NCBI	Rnor6.0
Rnor_5.0	7	74,295,361 - 74,295,541	UniSTS	Rnor5.0
RGSC_v3.4	7	70,851,096 - 70,851,276	UniSTS	RGSC3.4
Celera	7	63,658,504 - 63,658,684	UniSTS
RH 3.4 Map	7	640.18	UniSTS
Cytogenetic Map	7	q22	UniSTS

AU048643

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	74,457,925 - 74,458,050	NCBI	Rnor6.0
Rnor_5.0	7	74,623,395 - 74,623,520	UniSTS	Rnor5.0
RGSC_v3.4	X	28,213,357 - 28,213,482	UniSTS	RGSC3.4
Celera	X	16,965,671 - 16,965,796	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	52	67	138	95	11	51	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	75,852,610 - 75,856,798 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	75,852,610 - 75,858,812 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094539 ⟹ ENSRNOP00000093776

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	68,443,655 - 68,996,003 (+)	Ensembl
mRatBN7.2 Ensembl	7	66,558,471 - 67,127,314 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105415 ⟹ ENSRNOP00000077378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	68,443,655 - 69,013,574 (+)	Ensembl
mRatBN7.2 Ensembl	7	66,558,471 - 67,128,429 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114232 ⟹ ENSRNOP00000094909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	68,443,655 - 69,013,574 (+)	Ensembl
mRatBN7.2 Ensembl	7	66,558,471 - 67,128,429 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123826 ⟹ ENSRNOP00000102668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	68,443,655 - 69,013,574 (+)	Ensembl

RefSeq Acc Id:

NM_001134886 ⟹ NP_001128358

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,443,655 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,558,471 - 67,128,429 (+)	NCBI
Rnor_6.0	7	74,118,834 - 74,722,341 (+)	NCBI
Rnor_5.0	7	74,281,753 - 74,879,196 (+)	NCBI
RGSC_v3.4	7	70,839,616 - 71,464,951 (+)	RGD
Celera	7	63,647,181 - 64,211,271 (+)	NCBI

Sequence:

show sequence

GTGAAGGGGGCCGCGCTCTCCTCCCACGTCCGGGGACCGGCCACCTCCAGCCTCTTTGCCTACT
CTTGGTCAGGATCTGACTTTGACGCCTGATTTTTGAAGATGCTGGAGTCGTATGTAACTCCAAT
CTTAATGAGTTATGTGAATCGCTATATCAAGAACTTAAAGCCTTCGGATCTTCAGCTTTCACTA
TGGGGTGGGGACGTGGTTCTCAGCAAACTCGAGTTAAAGTTAGATGTTCTAGAACAGGAACTGA
AATTACCATTCACTTTTTTAAGTGGTCATATCCACGAACTGAGAATTCATGTACCATGGACAAA
ATTGGGCTCCGAACCTGTGGTAATTACCATCAATACAATGGAATGCATCTTGAAACTTAAAGAT
GGAATACAGGATGACCATGAAAGCTGTGGTTCTAATTCCACCAACCGTAGTACTGCTGAGAACA
CAAAATCATCCACGAAACTCCGAAGGATTCAGCAGGCCGCTCCTACAGACCCTGACTTACCACC
AGGATATGTGCAGAGTCTGATTAGACGAGTTGTAAATAATGTGAACATTGTTATAAATAATCTC
ATACTAAAATATGTTGAGGATGACATTGTTCTTTCTGTCAACATCACTTCTGCTGAATGCTATA
CCGTGGGTGAATTATGGGATCGTGCATTCATGGATATTTCTGCAACTGATCTGGTACTGAGGAA
GGCTATCAATTTTTCTGACTGTACAGTTTGTCTTGATAAACGAAATGCTAGTGGTAAAATCGAA
TTTTACCAGGATCCTTTATTATACAAATGTTCTTTCAGAACTCGCCTGCATTTTACATATGATA
ACCTAAATTCCAAGATGCCATCTGTTATTAAAATTCATACCTTGGTAGAGAGTCTGAAGCTCTC
TATCACAGATCAGCAGCTCCCTATGTTCATCCGTATAATGCAGCTTGGGATTGCACTATATTAT
GGAGAAATAGGCAATTTTAAAGATGGTGAAACAGAAGACCCTGCCTGTCTCAGTAAAGACCCAT
TAGGAAACCTTACAGGCACTGAGGATGAAACTAGATTAGATATGCAGTATCCTGCTCCGTACAA
AGGCCAAGAGTTATATCCACAGGACTATGAGGAGCCTCAGGGATGGGTGTCCTGGGCCTGGTCA
TTCGTTCCTGCAATTGTGAGTTACGATGATGGTGAAGAAGACTACCCTGGAACTGACCCTGCGT
CAACCATGCATCAGCAGAAAGCACACACACTGAAGGATCCCATTGTTTCTGTAGGATTTTATTG
CACAAAGGCGACTGTTACTTTTAAACTCACTGAAATGCAAGCTGAAAATAGCTATTATAGCCCA
CAGAAAGTAAAATCTAAGGAAGTTTTGTGTTGGGAACAAGAAGGAACTACAATTGAGGCTCTTA
TGATGGGAGAAGCTTTCTTTGATTGTCAGATTGGATTTGTAGGTTGCAGAGCCATGTGTCTTAA
GGGAATTATGGGTGTTAAAGATTTTGAGGAGCATATGGACAGAAGTGAAACCGAAGCCTGCTTC
TTCATTTGTGGTGAAAATTTAAGTACAAAAGGTTTGACATATCTTACAAATTCACTGTTTGATT
ACCGGAGCCCAGAGAACAATGGCACCCGTGCGGAGTTTACCTTGGATGCAGCTCACCATAAGGA
GATACACACTGAAATAGCTGGCATGCAAAGGTTTGGTGCTTTTTACATGGATTACCTGTATACA
ATGGAGCACAGCAGTGGCAAAGGTCCATCAAGTCAGCAAGACTTTCCTTCAGGGAAAAATGAGG
ATTTTGGAATAGTCCAAGAAAAGTCTACCAAGAGCCTTGTTATAGGGCCTCTAGATTGCCGCCT
GGACAGCAGTGCGGTACATCGGGTTTTGAAGATGATTGTTTGTGCCATGGAACATGAATATGAA
CCATATAGCAGGCTCAAACCAGAGAGTAAGGATGAAAAGGAGGTAGTCCTGAATCCTGAGGAAG
TGGCTTCTTTGGAGGAATATATTCCTACTCGGCATACAAGTGTTACTCTGCTCAAATGTACTTG
CACAATTTTTATGGCAGAATTCAATTTACTTGACCGTTTGCTTCCTGTCATCATGGGAGGAAAG
AACGCAAGTCACTTCACGAATGCCACAAACTTCCAGTCACTTCGGCCTTTGCCATCCATTCAGA
TATTGGTGGATAAAATCAATTTGGAACATTCTGTCCCAATGTATGCTGAACAGTTGGTCCATGT
GGTCAGCAGCCTTACTCAGCCTTCTGATAACCTTCTTCATTATTGCTATGTCCACTGCTACCTT
AAGGTGTTTGGTTTCCAGGCAGGACTGACGTGTTTGGAGCAGAGTGGGTCTCACTGCCTGCCTG
CACCCATTGTTCCCTCTTTCAGTACTGCCCTCTATGGGAAGCGTCTGAAGCTCCCTGCTCTCTG
GACCAAAAGATCTCAGACTGTTGTAACTGAGGGTATTTTTGAGCTCCCAAATCTCACAATTCAA
GCTACAAGAGCACAGACACTTTTGCTGCAAGCAGTGTATCAGAGTTGGTTTCATAGTGGGAATG
CCAGCTCTTCAACAGTAAATGAGGCTCTGATGAATGAAGTCTTCCAGACGACAGGTGTGAAATC
TAAGAATCCCCTGCCAACTCTTGAGGGCTCAATCCAGAATGTTGAACTGAAGTACTGCAGCACA
TCATTGGTCAAATGTGCCTCTGGGACCTTGGGATCAATAAAAATTTGTGCCAAAGCCCCAGGTG
ACAGTGGAAAAGAGAAGTTGATTCCCTTGCTTCAGGGTCCTTCTGACACTAGAGACCTTCACAG
CACCAAGTGGCTTAATGAAAGTAGAAAGCCTGAGTCTCTCTTAGCTCCAGATTTGATAGCCTTT
ACCATCCAAGTTCCCCAGTACATGGACTACTGCCACCACTCTGGTGCTGTATTTCTTTGTAGTG
TGCAAGGACTGGCTGTTAACCTTGACCCAATATTGTATACTTGGGTCATTTATCAACCACATAA
ACGCACAAGTAGACATATCCAGCAGCAGCCTGTGGTAGCTGTACCTCTTGTCACGTCAGTCAAC
AGAAGAAGAGAAGATGAACTGTCTGTTGGAAGTGCCCCATTGGGAAAGCAGCAGTCATATCAGG
CCTCAGAATATGCCAGCAGCCCCATAAAAACAAAAACAGTGACAGAGTCCAGACCACTGTCAGT
TCCGGTGAAGGCCGTGATGCACATTCATGAAGAATGTAGAAGTCCTGAAGACAAAATGAAAGAA
TTTATTGCAATATTATGGAACGCAGTGAAGAGTCTTACACTACAGCTTGATGTGCAGTCTTGCT
GTGTATTCATTCCAAATGACAGCCTGCCTTCACCAAGTACAATCGTCTCTGGTGACATCCCCGG
GACAGTAAGAAGTTGGTACCATGGACAAACCAGCATTCCAGGAACACTTGTCCTGTGTTTGCCG
CAAATTAAAATTGTTAGTGCTGGTCACAAGTCCATGGAGCCTCTGCAAGAGATTCCTTTTGTGA
TTCCACGGCCCATCCTTGAAGAGGGTGATGCATTTCCTTGGACCATAAGCTTGCATCATTTTAG
CATATATACCCTTCTTGGCAAGCAAGTGACACTGTCCCTGGTGGAGCCTATGGGATGTACGTCT
ACTCTAGCAGTCACATCTCAGCAGCTACTTCCAGTGGGACCTGAAGGGAGGCATTCATTTGTTG
TCTGTTTACATGTTGACTTAGAGTCATTAGAGATAAAATGCTCTAATCCCCAGGTCCAGCTCAT
TTATGAATTGGCCGATATCATGAGTAAAGTCTGGAATAAAATTCAGAAGAGAGGCCATCTTAGT
CCGTCTTCAGTGTACTCAGACACGATGGCAGGGCCTGTCCCTGGTTCTCCAGTTCGGAGCAGTG
TAGGTACAGCTCCACCAGACACCAGCACGTGCAGCCCATCTGCTGACATAGGAACTACCACTGA
GGGAGATTCGATTCAAGCTGCTGATGACTCGCCATTCTCAGACTCTGTCACCTTGGAACAGACT
ACCAGTCACATCGGTGGGTCCAGTGGACGCGTTAGTCTGTGGATGCAGTGGGTGCTCCCCAAAG
TCACTGTGAAACTCTTTGCACCAGACCTTGAAAAGAAAGACACAGAGGTTTGTATGGTCAGTGA
ATTAGAAGACCTCAGTGCATCCATAGATGTGCAGGATGTATACACCAAAGTGAAGTGTAAGATA
GAGAGCTTCAGTATTGACCACTATCAAAGCAGGCCTGGGGAAGGTTGGCAATCAGGACAATTTG
AAGGAGTGTTTCTGCAGTGCAAAGAAAAACCTGTGACAACCACAAAACTTCTAGACGGTGCTCA
TCAGCAGCATGGATTCCTTTCTCTGACGTACACAAAAGCTGTAACAAAAAATGTCCGCCACAAG
TTAACCTCAAGGAGTGAGCGAAGAAGTTTTCATAAGTTATCTGAAGGTTTAATGGATGGCTCAC
CTCATTTTCTTCATGAAATTCTCCTTTCTGCGCAAGCATTTGATATTGTTCTGTGCTTTCCTTT
ACTTAATGCAATTGCAAGCATATTTTACACTAAACTCCCAAAGACCCAAAGAGAAAAAAGAAAA
TCTTCCGGGCAGCCCATGAGGACCCATACGTTAACTTCACGCAATTTACCTTTGATTTATATCA
ATACAAGTGTGATCAGAATTTTTGTTCCCCAAACAGAAGAAACACAGTCATCTGTTACAGTGAA
TCAGGCAGCAAAGGAAGACACGATGGTTCTGAAAGTTGGCTCTGTTTCCATGGCTCCCCAGGCT
GATAATCCACTTGGCAGATCTGTACTCAGGAAAGATATTTACCAGAGAGCCTTAAACTTAGGAA
TTCTTCGAGATCCTGGATCAGAAATTGAAGACAGACAGTACCAAATAGACCTGCAGTCCATCAG
CATTGGTACTGCCCAGTGGGATCAACTCAAGCCAGAGAAAGGCAGTGGTACAGGAGGAGTGCCG
ACAGAGTCTGAGAGGAACTCTCAGAACCCAGCCCTGGAGTGGAACATGGCCAGCAGCATACAAC
GTCATCAAGAAAGGAGAGCAATTTTGACACCCATCTTGACAGATTTTTCTGTACGAATAACTGG
AGCACCTGCCATCATTTTCACCAAAATAATCTCCCCAGAAAATCTGCATATGGAGGAGGTTTTA
GTGTGTGGCCATTCCTTGGAAGTGAACATAACCACAAGCCTGGACTTCTTCCTCAGTGTGGCTC
AGGTTCAACTCTTACATCAGTTAGTAGCAGCAAATATGACTGGGTCGGAGCCGTCAGCCAAGGC
CACAGAGATCTCTAAACACGAACAGAAGAAAGCAGATACATTTGATGCAGGCACAGCCGAAACC
TCTTCTGGATGCAGTGGTGCTCAGGACAGTGGCATTGGCAGTGACAGTGTTAGAATCCGCATTG
TGCAAATAGAGCAGCACAGTGGTGCCAGTCAGCACCGCATCGCCCGCCCCTCCCACCAGTCATC
CATTGTGAAAAATCTTAACTTCATTCCCTTCGACATATTTATTACTGCCAGCAGGATCTCCCTA
ATGACCTATTCCTCTGTGGCCTTACCGAAATGCAAATTACCAGAACAGAAGGAAGGTGGAAAAA
CAGGCAAGAGTTCCTTAAATCTCCCAGAAGTTGATTCTGATGCAGCTAAGCCTAACCAGGCGTA
CATTTCCATGGCGACTGCTGAAGATCCCTTAAGCACTAGTACTTCTTTTTCTTCAGGGAAGAAG
ATAAGGGTTCTCTCCCTTGAAAGCCTCCATGCATCCACACGGCCATCTGCTAGACAAGCCCTCG
GGGTCACTGTAGTTCGGCAGCCGGGTCGAAGAGGAACTGGTGACTTAGAGCTAGACTTGTTTCT
TCATTTAATTGTATCCCAGCCTTCCTTGCTTCTGAGTTGTCACCACAGGAAACAGAGAATGGAA
ATATCCATCTTTGATGCAACGCTTAAAGGTGTAGCCTCGGACTACAAATGTGCAGATCCTGGGA
AGACTCTACCTGAAGCTTCTGACTATAACATTGTGTGGCTGCAGACAGTGCCTGGAGAGACAGA
CAGTAAAAGTGGGATCCCGCCTTCTCTCATCACACTACACATCAAAGACTTTCTTAATGGACCA
GCCGACATCAGCTTGGATGTATCAAAACCTTTGAAAGCAAACTTAAGTTTTACCAAACTCGATC
AGATAAATCATTTTTTAAAGAAGATAAAAAAGGCTCACAGCTCTGCACATAGCACAGAGACCTC
CGCCTCATCAGATTCTATGCTGAATAGGGATGAGCCTCCCGTCTCCAAATGCTACCATGGAAAG
TTGTCAAAGCCCAAAGTATACTGTGATGAAGCACAGAAGACATCATTTCAAGAAAACATGTGGA
GAGTCATCTCCTGCTTTCAAAAAGTTTCTGTCCATACTACCCAAATTGTGGTCTCCATGGAAAC
TGTCCCACATCCTCATAAACCATGTGTGTTAGCATCACTGTCAAACCTCAATGGAAGCCTTAGT
GTCAAAGCAGCACAAAAAGTATTTGGTGCAAGCCTTGGATCATCATTCCTCCTCAACATTAGTG
ATGCTCTCCTTAAAACAAGCCTCAAGGAGAGAAGTCGGATTCTCATAGGACCATTTTCTGCTGC
TGTCAATCTGGAAGCTAAATGGTGTAAACACAGTGGTAATCCAGGGCCACAACAGTCCATACCA
AAAATATCCATGGATTTAAGAGGTGGTCTGCTACAGGTTTTCTGGGGTCAAGAACATTTGAATT
GCTTGGCTCTTCTCCATGAATTATTCGATGGTTATCTTAAGGAGGAAGGCAAGTCTGAAATGCC
AGTTCCTGAATCAGCACCCCAAACACCATCTCCTATGGAAAAGGCTCAAGCTTTTAAGACTGAA
CAAAGTTCAGATGACCTGCGGACAGGCATCTTTCAGTACATACAGGATGCAGAACCTTTGAAAC
TCCCTGGTATGAATGAAGTATTGTTTTATAATGAAACAGAAGAGAGTCCCGGGATGATGCTGTG
GAGGTACCCAGAGCCTCGAGTGCTCACCCTCATACGGATAACTCCCGTGCCTTTCAACACCACA
GAGGATCCAGATATTAGCACAGCAGACCTGGGCGACGTGCTGCAGGTCCCTTGTAGTTTGGAAT
ATTGGGATGAACTCCAGAAGGTTTTTGTTGCGTTTCAAGAATTCAGTCTGTCTGAAAGCAAAGT
TTGTGAATTGCAGTTGCCAGATATCAATCTTGTACATGACCAGAAGAAACTGGTGTCCTCAGAT
CTGTGGAGAATCGTCCTAAACAACAATCAAAATACAACAGATGACCAAAGCTCTGCAAGTGAAT
CTGGTTCTCAAAGCACCTGTGAGCCGCTTGTAACTCCAACAGCCCTGGCTGCTTGCACCAGAGT
CGACTCGTGCTTCACCCCGTGGTTTGTCCCATCCCTCTGCGTGTCCTTCCAGCTCGCTCACCTG
GAGTTCCGTCTTTGCCATCACCTGGACCAACTCGGCACAGCTTCACCACAGCACCTACAGCCGT
TCGTTTCTGATAAAAATGTCCCATCTGAACTGGAATACATGATCATTTCCTTCAGAGAACCGAA
CCTGTATCTTCAGCAGTGGAACAGTGCTCCTGTCTGCCGGGAGATCCGGTTCTCATCGCAGGTG
GATTGTAAACTTCTGGAATGCAGAAACGTCACGATGCAAAGTGTGGTGAAACCCTTTGGCATCT
GTGGGCAGATGGCACTTTCCAGCAGTGGAGGGCAGAAGCTGCTGGATTGTACTGTGATCCTGGA
CTCCGTGCTTGTCAACTTTGGGCAGCACGTAGTTCATTCCCTGAGCACTGCAATTCAAGCATGG
CAGCAGAACAAATGCCCTGAGGTAGAAGAGTTGGTCTTCAGCCACTTTGTGATCTGTAATGACA
CACAGGAGACACTGCGGTTTGGCCAGGTGGATACTGATGAAAACATTCTCCTGGCGAGCCTCCA
TAGTCACCAGTACAGCTGGCGTTCTCACAAATCCCCACAGCTGTTACACATCTGTATTGAAGGC
TGGGGCAACTGGCGTTGGTCAGAGCCCTTCGTTGTGGATCACACCGGTACATTTATTAGGACGA
TTCAGTACAAAGGTCGAACTGCTTCACTCATCATCAAAGTTCGGCCGCTCAGCGGAGTGCAAAA
ACAGATTATCATCTGTGGAAGACAGATCATCTGTAGTTATTTGTCTCAGAGCATAGAACTGAAA
GTGGTTCAGCATTACATCGGTCAAGATGGACAAGCTGTAGTTCGAGAACACTTTGACTGCCTCA
CAGCCAAACAGAAGCTGCCTTCGTACATATTAGAAAACAGCGAACTGACAGAGCTGTGTGTAAA
GGCTAAAGGAGATGAGGACTGGTCAAGAGATGTGTGCCTGGAACCCAAAGCCCCTGAGTATAGC
ACTGTCATCCAGGTGCCTACTTCAAACAGCTCCATTATTTATGTTTGGTGCACAGTTTTGACTT
TGGAACCCAACTCTCAAGTTCAACAGCGAATGATCGTGTTCAGCCCTCTCTTTATCGTGAGAAG
TCATCTTCCAGACCCCATTATTACACACTTGGAGAAAAGAAGTCTGGGTTTGAGAGAGACACAG
ATTATTCCGGGAAGAGGGCAGGAAAATCCACTGCACAGTGTTGAACCTGACCTTGTACATCACC
TGACATTTCAAGCACGAGAAGAATATGATCCTTCAGATTGTGCTGTCCCCATATCAACAGCCCT
CATTAAGCAAATAACCACCAAGATACAACCTGGAAGCACAGTTAACGAGATGCTTGATGAGTTC
TATGGGTCAGAAAAGTCCCACGAGCCCACTTGGCCTTACAGTCAGAAAGATTCTGACAGGAATG
AGCAGCTGAGTCAGTGGGATAGCCCAATGCGCGTCAGACTGTCAATGTGGAAACCGTATGTTAG
GACACTGCTGATAGAACTGCTACCTTGGGCCCTGCTCATCAATCAATCCAAGTGGGACCTCTGG
CTGTTTGAAGGAGAAAAGATTGTTCTACAGGTTCCTGCTGGCAAAATTATTATTCCTCCTAATT
TTCAGGAAGCTTTTCAAATTGGAATTTACTGGGCAAATACAAACACTGTGCACAAGTCACTGGC
AATTAAACTGGTCCATAATCTGACGTCTCCAAAGTGGAAAGATGGCGGTAATGGTGAGGTAGTG
ACCCTGGATGAAGAAGCATTTGTTGATGCTGAAATCAGACTTGGTGCTTTCCCAGGACATCAGA
AGCTCTGTCAGTTCTGCATCTCCTCCATGGTGCAGCATGGCATACAAGTTATCCAGATTGAAGA
TAAGACTACAGTAATCAATAACACTCCGTATGAGATATTTTATAAGCCACACTTGTCTGTCTCC
AACCCCTATTCTGGAAAGGAGCATCTTCATGTTCCGGACAGTGCTACTTTTAGCATTTGCCCAG
GGGGAGAGCATCCTGATGTGAAATCCAGCTCACTGCCTTGCTGGGACATCATGCCTGATGTGGG
GCCATCAGTGCTAGACACAACCATTCTTCAAAAACAGATATTGCTGGGCTTTTCTCCTGTACCA
GGTGCCGACAGCTCTCAGTGCTGGAGCCTGCCAGCCATCATTAGACGAGAGTTTCCCAGACAAA
GTGTAGCAGTGCCCTTTGGAACCTTGAGGGAAGATGGATTCTGCACCAGGGCAATAGCACTGAC
GTATCAAGAGCACTTTGGAGTCACCTACCTAACCCTCTCTGAAGACCCAAGTCCGCGAGTAGTT
TTCCACAACAGATGCCCAGTAACGATTCTTGTAAAGGAGAACATCAGAGATAGTCCAAAGTTTG
AGGTTTATTGCAAAAAAATCCCTCCGGAGAGTTCAATTCATCATGAGCTGTATCACCAGATTAT
CAGTTACCCAGACTGCAAGACCAAGGACTTACTTCCCAGCCTCTTTCTGAGAGTAGACACAATG
GAAGAAATGCCAGCCGAATGGAGTGACCCTGTGGACATCAACAGTCAGGGGACACAGGTTGTAT
TCCTCACTGGCTTTGGCTATGTGTATGTGGACATCGCCCAACAGTGTGGCACAGTCTTTATCAT
TCTAGCTCCAGAAGGAAAAGCAGGACCCATTTTTACGAGTGCCAGCAGAGCTCTGGAGAGGATG
GTCACTTTCAGGATGTTCATCACCCAGTTGAGCCTGGCAGTGTCTGACGACCTCACACACCAGG
CACCATCTGAACTACTGAGGCTCACTCTGGACAATGTTTTTCTCCATGTGTCTCCATGTGTGCC
TGGTGTCCTCCCAGGGGAAGAGCCTCCCTCCAGCTTCTTCCAGCTTTACGGTGTGGAGGTCTAT
TGTGGAGACCTGCAGTTGGACAACCAGCTTTATAGCAAGTCCAGTTTCCATTTTGCTGTCTTGG
TCTGCCGAGGAGAGAAAACAGAGCCTGCTCAGTATTCCAAAGTGCACAGTCTCCTGGTCTCCAG
CAAAGACTTGGAGGACTACAAGGAAAATTGCTTCATCAAACTTTGCCTCACTGTATCTGAAGGG
AAGGACTTCCTCCTCGATGTCAGCGAGTTCACTTTTGAACTGAAACCAGCACGGCTGTATGTGG
AGGACACCTTCGTATACTACATCAAAACTTTGTTTGACACCTACCTTCCTCACAGCAGGCTGGC
TGGTCACCATGCACAGCTCCGTACAGGAAAGCAGCTGCTGCCCATGCAGGTGACACAGCATGCC
AAGGCCTTGGTGAACCCAGTGAAGTTACGGAAGCTGGTCATCCAGCCAGTGAGCCTGCTCGTCA
GCATTCACGCCTCCCTCAAGCTGTACATCGCCTCCGACCACACTCCTCTCTCCTTCTCCGTGTT
TGAAAGAGGACCGCTGTTCACTACAGCGAGGCAACTGGTGCACGCACTGGCCATGCACTATGCT
GCCGGGGCTCTTTTCAGAGCAGGCTGGGTGGTGGGGTCTCTGGAAATCCTCGGCAGCCCTGCCA
GCCTAGTGAGAAGCATCGGAAACGGGATCTCGGACTTCTTCAGGCTTCCTTATGAGGGCTTGAC
CCGAGGCCCAGGAGCCTTCGTGAGCGGGGTCTCCAGAGGGACCACATCGTTCGTCAGGCACATT
TCCAAAGGTACCTTGACGTCCATCACCAACTTGGCCACCAGCCTGGCCCGAAATATGGACCGGC
TCTCACTGGACGAGGAGCACTACACCCGGCAGGAGGAGTGGCGGCGGCAGCTCCCAGAAAGCCT
GAGTGAAGGACTGCGACAGGGCCTGTCCAGGCTAGGCATCAGCCTGCTCGGTGCAGTTGCTGGT
ATAGTTGATCAGCCAATGCAGAACTTCCAGAAAACATCTGAGACCCAAGCTTCAGCCGGACATA
AGGCAAAAGGTGTCATCTCAGGCGTGGGGAAAGGAATCATGGGGGTATTCACCAAACCCATTGG
AGGAGCTGCAGAACTTGTGTCACAGACTGGCTACGGTATTTTACATGGAGCTGGACTTTCTCAG
CTTCCCAAACAACGCTGCCAACCAACACATCTATATGCTGACCAGGCTCCAAACAGCCACGTCA
AATATGTCTGGAAAATGCTTCAGTCTTTGGGTAGACCAGAAGTCCATATGGCCCTGGATGTGGT
TCTGGTGAGGGGCTCAGGCCAGGAGCACGAAGGGTGCTTGCTGCTGACATCAGAAGTGCTATTT
GTCGTAAGCATCAGTGAGGACACGCAGCAACAAGCCTTCCCCATCACAGAGATCGACTGTGCAC
AGGACACCAAGCAAAAGAACCTGCTCACTGTGCAGCTCAAGCAACCAAGAGTAGCCTGCGATGT
GGAGATTGACGGTGCCCGGGAGAGACTGTCAGAGCAACAGTTTAACAGACTCGTGGACTACATT
GCAAAAACATCTTGTCACCTGGCCCCCAGCTGCTCTTCTATGCAAACATGCGCTGTGGTAGCTT
TGGAGCCCCCTCCTGCCACTGTTAAGACATACCGTTACTTGGCTGACCCACATTTTGCACAGGT
CTTCATTAGCAAACTCACCATGGTGAGGAATAAAGCCCTGAGGAAAGGCTTCCTCTGAGCCAGA
GGTGGTGTTGGATCTCCATGTGCAACAGGGAGTTCTGACACTCAACACTGACAGACACGGGGCC
AACACTTCTTTAGTTACGGGCACACTCAGTTTGTAGGGATTTACATCTTACCTTCTCCCCAAAA
GAAACAAAAATTCCAAATGGGAGAAGAATAAATGATCAGGAAACCCTGTAAGGATGTTGTTGTG
TTCTTACCATAACAAGAAACCTTTTTTCTCTATGACATGTGCATACGTTTTCACTGGAGTTTCA
ACCTATTAATGATCGGCTATACAGTAAAATGTTGACAGGCCTTAGACAGCAGACCAAGAAGTAA
ACTCCACCACCTCTCAATACTTAGAACTTTGCTGTTTCACTTGAATTTTTCACTTAATTACAAT
CTCACTCTTTTAGTAGAACAGTGTACGTTCCCCTCAGCTGTGCTCTCCTGACCTCTGGAAGGCA
GACGTCTAACTGCTGATATAGTTTGGAAAGCTGTGCTTAACTGAGCTGAACAGTAACGTTTGTG
TCTGCCAACAAGAACAGAACATACATGTGAGTTGTGATGTTTGTTTGGGGATGAGTGAGGACTT
CAACCTTAAGACTGGCAGGGCCTTCAGTCCAAAGAGTTGCTCTGCTGAATTGATGTGCTAACGC
ATAGAGATCCCTGTGTCTGCTAAGTGTTGTTTGACAGCTAAGGAGGGCTTTGGTGTAAGACCTG
GAATCACCAGCTACCTTCAGATGTTAGTGAATCTCACGGGCTCATTACCCACTGATGGCATTGG
CATTCATACACAGGCCTGCAGTCTGTTCCCTTCAACAGTGACAAATGTGACAGTAAGACAGTGC
CATTGATTTCAAAGGCCACTGATCAACAACTCTCAGTCTACTGGGCACATCCATACTACAGCAC
CAGTCCTGGAAAACAAGTCCTCATATTCAAACCAAATATGAAGATCATCTCTGCAATTGGTCTA
TTACACATTTAGGAAAGGATCATTTTTGTCCATCTCAAGAATTATTTTTAAGAATGTAAATATG
TACTGACTCTTGTATGGTTTATGGTAATTTTACATATTGCTGGAAATTATTATATAAATAAAAG
GTATTCCTGAATTACTGACCATGGA

hide sequence

RefSeq Acc Id:

XM_039079215 ⟹ XP_038935143

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,557,862 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079216 ⟹ XP_038935144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,468,961 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,583,796 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079218 ⟹ XP_038935146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,557,862 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079219 ⟹ XP_038935147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,557,862 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079220 ⟹ XP_038935148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,484,144 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,598,884 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079221 ⟹ XP_038935149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,996,009 (+)	NCBI
mRatBN7.2	7	66,557,862 - 67,111,055 (+)	NCBI

RefSeq Acc Id:

XM_039079222 ⟹ XP_038935150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,758,937 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,873,780 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079223 ⟹ XP_038935151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,763,685 - 69,013,574 (+)	NCBI
mRatBN7.2	7	66,878,527 - 67,128,427 (+)	NCBI

RefSeq Acc Id:

XM_039079224 ⟹ XP_038935152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,837,185 (+)	NCBI
mRatBN7.2	7	66,557,863 - 66,952,996 (+)	NCBI

RefSeq Acc Id:

XM_063263566 ⟹ XP_063119636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,480,952 - 69,013,574 (+)	NCBI

RefSeq Acc Id:

XM_063263567 ⟹ XP_063119637

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,491,595 - 69,013,574 (+)	NCBI

RefSeq Acc Id:

XM_063263568 ⟹ XP_063119638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,544,753 - 69,013,574 (+)	NCBI

RefSeq Acc Id:

XM_063263570 ⟹ XP_063119640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,821,744 (+)	NCBI

RefSeq Acc Id:

XM_063263571 ⟹ XP_063119641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,797,987 (+)	NCBI

RefSeq Acc Id:

XM_063263572 ⟹ XP_063119642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,798,181 (+)	NCBI

RefSeq Acc Id:

XM_063263573 ⟹ XP_063119643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,797,985 (+)	NCBI

RefSeq Acc Id:

XM_063263574 ⟹ XP_063119644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,605,064 (+)	NCBI

RefSeq Acc Id:

XM_063263575 ⟹ XP_063119645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,594,566 (+)	NCBI

RefSeq Acc Id:

XR_010052974

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	68,436,996 - 68,674,173 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128358	(Get FASTA)	NCBI Sequence Viewer
	XP_038935143	(Get FASTA)	NCBI Sequence Viewer
	XP_038935144	(Get FASTA)	NCBI Sequence Viewer
	XP_038935146	(Get FASTA)	NCBI Sequence Viewer
	XP_038935147	(Get FASTA)	NCBI Sequence Viewer
	XP_038935148	(Get FASTA)	NCBI Sequence Viewer
	XP_038935149	(Get FASTA)	NCBI Sequence Viewer
	XP_038935150	(Get FASTA)	NCBI Sequence Viewer
	XP_038935151	(Get FASTA)	NCBI Sequence Viewer
	XP_038935152	(Get FASTA)	NCBI Sequence Viewer
	XP_063119636	(Get FASTA)	NCBI Sequence Viewer
	XP_063119637	(Get FASTA)	NCBI Sequence Viewer
	XP_063119638	(Get FASTA)	NCBI Sequence Viewer
	XP_063119640	(Get FASTA)	NCBI Sequence Viewer
	XP_063119641	(Get FASTA)	NCBI Sequence Viewer
	XP_063119642	(Get FASTA)	NCBI Sequence Viewer
	XP_063119643	(Get FASTA)	NCBI Sequence Viewer
	XP_063119644	(Get FASTA)	NCBI Sequence Viewer
	XP_063119645	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16404	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000077378
	ENSRNOP00000077378.2
	ENSRNOP00000093776
	ENSRNOP00000093776.1
	ENSRNOP00000094909
	ENSRNOP00000094909.1
	ENSRNOP00000102668.1

RefSeq Acc Id:

NP_001128358 ⟸ NM_001134886

- UniProtKB:

A0A8I5Y7Q0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHE
LRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAENTKSSTKLRRIQQA
APTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDI
SATDLVLRKAINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIH
TLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEDPACLSKDPLGNLTGTEDETRL
DMQYPAPYKGQELYPQDYEEPQGWVSWAWSFVPAIVSYDDGEEDYPGTDPASTMHQQKAHTLKD
PIVSVGFYCTKATVTFKLTEMQAENSYYSPQKVKSKEVLCWEQEGTTIEALMMGEAFFDCQIGF
VGCRAMCLKGIMGVKDFEEHMDRSETEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEF
TLDAAHHKEIHTEIAGMQRFGAFYMDYLYTMEHSSGKGPSSQQDFPSGKNEDFGIVQEKSTKSL
VIGPLDCRLDSSAVHRVLKMIVCAMEHEYEPYSRLKPESKDEKEVVLNPEEVASLEEYIPTRHT
SVTLLKCTCTIFMAEFNLLDRLLPVIMGGKNASHFTNATNFQSLRPLPSIQILVDKINLEHSVP
MYAEQLVHVVSSLTQPSDNLLHYCYVHCYLKVFGFQAGLTCLEQSGSHCLPAPIVPSFSTALYG
KRLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTLLLQAVYQSWFHSGNASSSTVNEALMNE
VFQTTGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTLGSIKICAKAPGDSGKEKLIPLLQG
PSDTRDLHSTKWLNESRKPESLLAPDLIAFTIQVPQYMDYCHHSGAVFLCSVQGLAVNLDPILY
TWVIYQPHKRTSRHIQQQPVVAVPLVTSVNRRREDELSVGSAPLGKQQSYQASEYASSPIKTKT
VTESRPLSVPVKAVMHIHEECRSPEDKMKEFIAILWNAVKSLTLQLDVQSCCVFIPNDSLPSPS
TIVSGDIPGTVRSWYHGQTSIPGTLVLCLPQIKIVSAGHKSMEPLQEIPFVIPRPILEEGDAFP
WTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQQLLPVGPEGRHSFVVCLHVDLESLEIK
CSNPQVQLIYELADIMSKVWNKIQKRGHLSPSSVYSDTMAGPVPGSPVRSSVGTAPPDTSTCSP
SADIGTTTEGDSIQAADDSPFSDSVTLEQTTSHIGGSSGRVSLWMQWVLPKVTVKLFAPDLEKK
DTEVCMVSELEDLSASIDVQDVYTKVKCKIESFSIDHYQSRPGEGWQSGQFEGVFLQCKEKPVT
TTKLLDGAHQQHGFLSLTYTKAVTKNVRHKLTSRSERRSFHKLSEGLMDGSPHFLHEILLSAQA
FDIVLCFPLLNAIASIFYTKLPKTQREKRKSSGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTE
ETQSSVTVNQAAKEDTMVLKVGSVSMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQ
YQIDLQSISIGTAQWDQLKPEKGSGTGGVPTESERNSQNPALEWNMASSIQRHQERRAILTPIL
TDFSVRITGAPAIIFTKIISPENLHMEEVLVCGHSLEVNITTSLDFFLSVAQVQLLHQLVAANM
TGSEPSAKATEISKHEQKKADTFDAGTAETSSGCSGAQDSGIGSDSVRIRIVQIEQHSGASQHR
IARPSHQSSIVKNLNFIPFDIFITASRISLMTYSSVALPKCKLPEQKEGGKTGKSSLNLPEVDS
DAAKPNQAYISMATAEDPLSTSTSFSSGKKIRVLSLESLHASTRPSARQALGVTVVRQPGRRGT
GDLELDLFLHLIVSQPSLLLSCHHRKQRMEISIFDATLKGVASDYKCADPGKTLPEASDYNIVW
LQTVPGETDSKSGIPPSLITLHIKDFLNGPADISLDVSKPLKANLSFTKLDQINHFLKKIKKAH
SSAHSTETSASSDSMLNRDEPPVSKCYHGKLSKPKVYCDEAQKTSFQENMWRVISCFQKVSVHT
TQIVVSMETVPHPHKPCVLASLSNLNGSLSVKAAQKVFGASLGSSFLLNISDALLKTSLKERSR
ILIGPFSAAVNLEAKWCKHSGNPGPQQSIPKISMDLRGGLLQVFWGQEHLNCLALLHELFDGYL
KEEGKSEMPVPESAPQTPSPMEKAQAFKTEQSSDDLRTGIFQYIQDAEPLKLPGMNEVLFYNET
EESPGMMLWRYPEPRVLTLIRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFQ
EFSLSESKVCELQLPDINLVHDQKKLVSSDLWRIVLNNNQNTTDDQSSASESGSQSTCEPLVTP
TALAACTRVDSCFTPWFVPSLCVSFQLAHLEFRLCHHLDQLGTASPQHLQPFVSDKNVPSELEY
MIISFREPNLYLQQWNSAPVCREIRFSSQVDCKLLECRNVTMQSVVKPFGICGQMALSSSGGQK
LLDCTVILDSVLVNFGQHVVHSLSTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTD
ENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFVVDHTGTFIRTIQYKGRTASLIIK
VRPLSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILEN
SELTELCVKAKGDEDWSRDVCLEPKAPEYSTVIQVPTSNSSIIYVWCTVLTLEPNSQVQQRMIV
FSPLFIVRSHLPDPIITHLEKRSLGLRETQIIPGRGQENPLHSVEPDLVHHLTFQAREEYDPSD
CAVPISTALIKQITTKIQPGSTVNEMLDEFYGSEKSHEPTWPYSQKDSDRNEQLSQWDSPMRVR
LSMWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWAN
TNTVHKSLAIKLVHNLTSPKWKDGGNGEVVTLDEEAFVDAEIRLGAFPGHQKLCQFCISSMVQH
GIQVIQIEDKTTVINNTPYEIFYKPHLSVSNPYSGKEHLHVPDSATFSICPGGEHPDVKSSSLP
CWDIMPDVGPSVLDTTILQKQILLGFSPVPGADSSQCWSLPAIIRREFPRQSVAVPFGTLREDG
FCTRAIALTYQEHFGVTYLTLSEDPSPRVVFHNRCPVTILVKENIRDSPKFEVYCKKIPPESSI
HHELYHQIISYPDCKTKDLLPSLFLRVDTMEEMPAEWSDPVDINSQGTQVVFLTGFGYVYVDIA
QQCGTVFIILAPEGKAGPIFTSASRALERMVTFRMFITQLSLAVSDDLTHQAPSELLRLTLDNV
FLHVSPCVPGVLPGEEPPSSFFQLYGVEVYCGDLQLDNQLYSKSSFHFAVLVCRGEKTEPAQYS
KVHSLLVSSKDLEDYKENCFIKLCLTVSEGKDFLLDVSEFTFELKPARLYVEDTFVYYIKTLFD
TYLPHSRLAGHHAQLRTGKQLLPMQVTQHAKALVNPVKLRKLVIQPVSLLVSIHASLKLYIASD
HTPLSFSVFERGPLFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGISDF
FRLPYEGLTRGPGAFVSGVSRGTTSFVRHISKGTLTSITNLATSLARNMDRLSLDEEHYTRQEE
WRRQLPESLSEGLRQGLSRLGISLLGAVAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGI
MGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWKMLQSLGRP
EVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSISEDTQQQAFPITEIDCAQDTKQKNLLTVQL
KQPRVACDVEIDGARERLSEQQFNRLVDYIAKTSCHLAPSCSSMQTCAVVALEPPPATVKTYRY
LADPHFAQVFISKLTMVRNKALRKGFL

hide sequence

RefSeq Acc Id:	XP_038935143 ⟸ XM_039079215
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038935146 ⟸ XM_039079218
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AM06 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935147 ⟸ XM_039079219
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038935149 ⟸ XM_039079221
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AKJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935152 ⟸ XM_039079224
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038935144 ⟸ XM_039079216
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038935148 ⟸ XM_039079220
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038935150 ⟸ XM_039079222
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038935151 ⟸ XM_039079223
- Peptide Label:	isoform X11

Ensembl Acc Id:

ENSRNOP00000077378 ⟸ ENSRNOT00000105415

Ensembl Acc Id:

ENSRNOP00000093776 ⟸ ENSRNOT00000094539

Ensembl Acc Id:

ENSRNOP00000094909 ⟸ ENSRNOT00000114232

RefSeq Acc Id:	XP_063119640 ⟸ XM_063263570
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063119642 ⟸ XM_063263572
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063119641 ⟸ XM_063263571
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063119643 ⟸ XM_063263573
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063119644 ⟸ XM_063263574
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_063119645 ⟸ XM_063263575
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_063119636 ⟸ XM_063263566
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119637 ⟸ XM_063263567
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063119638 ⟸ XM_063263568
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000102668 ⟸ ENSRNOT00000123826

Protein Domains

Chorein N-terminal VPS13-like middle region

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311183	AgrOrtholog
BioCyc Gene	G2FUF-33662	BioCyc
Ensembl Genes	ENSRNOG00000055234	Ensembl
	ENSRNOG00000066252	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000094539	ENTREZGENE
	ENSRNOT00000094539.2	UniProtKB/TrEMBL
	ENSRNOT00000105415	ENTREZGENE
	ENSRNOT00000105415.2	UniProtKB/TrEMBL
	ENSRNOT00000114232	ENTREZGENE
	ENSRNOT00000114232.2	UniProtKB/TrEMBL
	ENSRNOT00000123826.1	UniProtKB/TrEMBL
InterPro	VPS13-like_M	UniProtKB/TrEMBL
	VPS13-like_N	UniProtKB/TrEMBL
	VPS13B	UniProtKB/TrEMBL
KEGG Report	rno:315036	UniProtKB/TrEMBL
NCBI Gene	315036	ENTREZGENE
PANTHER	PTHR12517	UniProtKB/TrEMBL
	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B	UniProtKB/TrEMBL
Pfam	Chorein_N	UniProtKB/TrEMBL
	VPS13_M	UniProtKB/TrEMBL
PhenoGen	Vps13b	PhenoGen
RatGTEx	ENSRNOG00000055234	RatGTEx
	ENSRNOG00000066252	RatGTEx
UniProt	A0A8I5Y7Q0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKJ7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AM06	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LBW8_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Vps13b	vacuolar protein sorting 13 homolog B	LOC102555534	vacuolar protein sorting-associated protein 13B-like	Data merged from RGD:7590658	737654	PROVISIONAL
2016-05-11	Vps13b	vacuolar protein sorting 13 homolog B	Vps13b	vacuolar protein sorting 13 homolog B (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-18	LOC102555534	vacuolar protein sorting-associated protein 13B-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-04-20	Vps13b	vacuolar protein sorting 13 homolog B (yeast)	Cohh1	Cohen syndrome homolog 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cohh1	Cohen syndrome homolog 1	Cohh1_predicted	Cohen syndrome homolog 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cohh1_predicted	Cohen syndrome homolog 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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