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Gene: Slitrk5 (SLIT and NTRK-like family, member 5) Rattus norvegicus

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Symbol:

Slitrk5

Name:

SLIT and NTRK-like family, member 5

RGD ID:

1310957

Description:

Predicted to be involved in several processes, including positive regulation of synapse assembly; regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission; and synaptic membrane adhesion. Predicted to act upstream of or within several processes, including adult behavior; grooming behavior; and nervous system development. Is active in glutamatergic synapse. Orthologous to human SLITRK5 (SLIT and NTRK like family member 5); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC306152; SLIT and NTRK-like protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	95,261,397 - 95,270,465 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	95,261,005 - 95,276,090 (+)	Ensembl				GRCr8
mRatBN7.2	15	88,848,123 - 88,858,809 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	88,847,535 - 88,856,836 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	92,796,049 - 92,800,870 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	93,928,944 - 93,933,765 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	90,858,691 - 90,863,512 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	96,817,907 - 96,826,760 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	96,821,832 - 96,826,653 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	100,296,097 - 100,304,915 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	96,407,553 - 96,412,374 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	87,847,358 - 87,852,179 (+)	NCBI		Celera
RGSC_v3.1	15	96,419,582 - 96,427,541 (+)	NCBI
Cytogenetic Map	15	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

obsessive-compulsive disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetaldehyde (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbamazepine (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

diclofenac (EXP)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethylbenzene (ISO)

formaldehyde (ISO)

gentamycin (EXP)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

nitrofen (EXP)

okadaic acid (ISO)

paracetamol (EXP)

paraquat (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

toluene (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult behavior (ISO)

axonogenesis (IBA,IEA,ISO)

chemical synaptic transmission (ISO)

circulatory system development (ISO)

dendrite morphogenesis (ISO)

grooming behavior (ISO)

positive regulation of synapse assembly (IBA,IEA,ISO)

regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission (ISO)

response to xenobiotic stimulus (ISO)

skin development (ISO)

striatum development (ISO)

synaptic membrane adhesion (ISO)

Cellular Component

glutamatergic synapse (IDA,IMP)

membrane (IEA)

postsynaptic density membrane (ISO)

receptor complex (ISO)

synapse (IDA,IMP)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Slitrk5 deficiency impairs corticostriatal circuitry and leads to obsessive-compulsive-like behaviors in mice.	Shmelkov SV, etal., Nat Med. 2010 May;16(5):598-602, 1p following 602. doi: 10.1038/nm.2125. Epub 2010 Apr 25.

Additional References at PubMed

PMID:14550773	PMID:23382219	PMID:24613359	PMID:36811190

Genomics

Comparative Map Data

Slitrk5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	95,261,397 - 95,270,465 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	95,261,005 - 95,276,090 (+)	Ensembl				GRCr8
mRatBN7.2	15	88,848,123 - 88,858,809 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	88,847,535 - 88,856,836 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	92,796,049 - 92,800,870 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	93,928,944 - 93,933,765 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	90,858,691 - 90,863,512 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	96,817,907 - 96,826,760 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	96,821,832 - 96,826,653 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	100,296,097 - 100,304,915 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	96,407,553 - 96,412,374 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	87,847,358 - 87,852,179 (+)	NCBI		Celera
RGSC_v3.1	15	96,419,582 - 96,427,541 (+)	NCBI
Cytogenetic Map	15	q23	NCBI

SLITRK5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	87,671,371 - 87,679,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	87,671,371 - 87,696,272 (+)	Ensembl			hg38	GRCh38
GRCh37	13	88,323,626 - 88,331,871 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	87,122,871 - 87,129,872 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	87,122,870 - 87,129,869	NCBI
Celera	13	69,166,179 - 69,173,176 (+)	NCBI		Celera
Cytogenetic Map	13	q31.2	NCBI
HuRef	13	68,910,931 - 68,917,930 (+)	NCBI		HuRef
CHM1_1	13	88,293,198 - 88,300,203 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	86,874,975 - 86,899,840 (+)	NCBI		T2T-CHM13v2.0

Slitrk5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	111,912,547 - 111,920,576 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	111,912,529 - 111,920,573 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	111,675,115 - 111,683,144 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	111,675,097 - 111,683,141 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	112,074,337 - 112,082,357 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	110,556,952 - 110,564,972 (+)	NCBI		MGSCv36	mm8
Celera	14	110,285,183 - 110,293,077 (+)	NCBI		Celera
Cytogenetic Map	14	E4	NCBI
cM Map	14	57.86	NCBI

Slitrk5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	21,342,379 - 21,350,464 (-)	Ensembl
ChiLan1.0	NW_004955404	21,342,379 - 21,350,803 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLITRK5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	89,167,647 - 89,175,189 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	87,763,651 - 87,771,201 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	68,810,639 - 68,831,189 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	87,979,061 - 87,985,133 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	87,980,905 - 87,983,781 (+)	Ensembl			panPan2	panpan1.1

SLITRK5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	39,381,201 - 39,390,728 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	39,384,666 - 39,387,542 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	39,212,232 - 39,221,692 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	39,757,760 - 39,767,235 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	39,757,875 - 39,766,340 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	39,427,942 - 39,437,403 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	39,508,055 - 39,517,498 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	39,505,957 - 39,515,412 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slitrk5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	175,245,525 - 175,253,697 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	20,698,463 - 20,705,408 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	20,698,334 - 20,706,161 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLITRK5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	57,792,665 - 57,800,846 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	57,792,576 - 57,800,852 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	63,658,233 - 63,669,168 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLITRK5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	66,566,718 - 66,574,096 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	66,569,866 - 66,572,742 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666046	22,928,682 - 22,936,945 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slitrk5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624779	5,382,466 - 5,390,079 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624779	5,382,712 - 5,390,490 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slitrk5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	13,346,229 - 13,354,881 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slitrk5
72 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	652
Count of miRNA genes:	277
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000012785
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	60213984	105213984	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
1549844	Bss7	Bone structure and strength QTL 7	6.4		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	15	82194914	108192169	Rat
61477	Aia4	Adjuvant induced arthritis QTL 4	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	15	62440892	97773284	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	74735564	106469153	Rat
1300118	Bp190	Blood pressure QTL 190	2.94		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	15	88677086	104695021	Rat
1358354	Srcrt5	Stress Responsive Cort QTL 5	3.38		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	82503470	108192169	Rat
70182	BpQTLcluster12	Blood pressure QTL cluster 12	3.53		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	15	72716871	101425383	Rat
70155	Gcs1	Gastric cancer susceptibility QTL1	3.8		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	15	82714037	106778197	Rat
1300120	Kidm7	Kidney mass QTL 7	3.55		kidney mass (VT:0002707)	left kidney wet weight to body weight ratio (CMO:0001954)	15	88677086	104695021	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	64571127	108192169	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
7411646	Foco21	Food consumption QTL 21	23.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	15	84278281	108192169	Rat
631516	Gluco31	Glucose level QTL 31	7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	72716871	101425383	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	61710951	106710951	Rat
1581519	Cm59	Cardiac mass QTL 59	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	15	95260808	102247606	Rat
1331724	Bp223	Blood pressure QTL 223	3.53715		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	75928947	101425383	Rat
1641889	Colcr6	Colorectal carcinoma resistance QTL 6	2.9	0.0126	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	15	83700787	108192169	Rat
2317050	Aia24	Adjuvant induced arthritis QTL 24	2.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	59257087	104257087	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	67399137	108192169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
2317055	Aia10	Adjuvant induced arthritis QTL 10	3.41		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	82194914	108192169	Rat

Markers in Region

BF405158

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	88,855,935 - 88,856,059 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	96,826,364 - 96,826,487	NCBI	Rnor6.0
Rnor_5.0	15	100,304,519 - 100,304,642	UniSTS	Rnor5.0
RGSC_v3.4	15	96,412,085 - 96,412,208	UniSTS	RGSC3.4
Celera	15	87,851,890 - 87,852,013	UniSTS
RH 3.4 Map	15	619.09	UniSTS
Cytogenetic Map	15	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	9	59	131	60	59	39	20	39	6	184	98	5	122	31	72	20	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012785 ⟹ ENSRNOP00000066274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	95,261,005 - 95,276,090 (+)	Ensembl
mRatBN7.2 Ensembl	15	88,847,535 - 88,856,836 (+)	Ensembl
Rnor_6.0 Ensembl	15	96,821,832 - 96,826,653 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137337 ⟹ ENSRNOP00000104303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	95,261,097 - 95,276,090 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000174032 ⟹ ENSRNOP00000104477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	95,263,197 - 95,276,090 (+)	Ensembl

RefSeq Acc Id:

NM_001107284 ⟹ NP_001100754

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	95,265,644 - 95,270,465 (+)	NCBI
mRatBN7.2	15	88,851,404 - 88,856,225 (+)	NCBI
Rnor_6.0	15	96,821,832 - 96,826,653 (+)	NCBI
Rnor_5.0	15	100,296,097 - 100,304,915 (+)	NCBI
RGSC_v3.4	15	96,407,553 - 96,412,374 (+)	RGD
Celera	15	87,847,358 - 87,852,179 (+)	RGD

Sequence:

show sequence

CCCTTGCAGGAGGTAAAATGCACGTTTGCTGCCCCCCAGTAACTTTGGAACAGGACCTTCACAG
AAAAATGCATAGCTGGATGCTGCACACCCTAGCATTTGCTGTAACATCTCTCGTCCTCTCCTGT
GCAGAAACCATCGATTATTATGGGGAAATCTGTGACAATGCATGTCCTTGTGAGGAAAAGGACG
GCATTTTAACTGTGAGCTGTGAAAACCGAGGGATCATCAGTCTCTCTGAAATTAGCCCTCCCCG
TTTCCCAATCTATCACCTCTTATTGTCTGGAAACCTTCTGAACCGCCTCTATCCCAATGAGTTT
GTTAATTACACTGGGGCTTCAATTTTACATCTGGGTAGCAATGTTATCCAAGACATTGAGACCG
GGGCTTTCCATGGGCTGCGGGGTTTGAGGCGACTGCATCTAAACAATAATAAATTGGAACTTCT
GCGAGACGATACCTTTCTTGGCTTGGAGAACTTAGAGTACCTGCAGGTCGATTACAATTACATC
AGTGTCATTGAACCCAATGCTTTTGGGAAACTGCATATGCTGCAGGTGCTTATCCTCAATGACA
ACCTCTTGTCAGGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGCACTTGGACTTGCG
GGGGAACAGGCTAAAACTTCTGCCCTATGTGGGGCTGTTGCAACACATGGATAAAGTTGTGGAA
TTACAGCTGGAGGAAAACCCCTGGAATTGCTCATGTGAACTAATTTCTCTCAAGGATTGGTTGG
ACAGCATCTCCTACTCAGCCCTTGTGGGCGATGTGGTCTGTGAGACCCCCTTCCGTTTACATGG
CAGGGATTTGGATGAGGTATCCAAGCAGGAACTTTGTCCAAGGAAACTTATTTCTGACTATGAG
ATGAGGCCACAGACTCCTTTAAGCACCACGGGGTATCTACATACCACCCCAGCTTCTGTAAACT
CTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCCTCTGAAGCCTCCCAAGGGGACCCGCCA
GCCCAACAAACCCAGAGTGCGCCCCACCTCTAGGCAGCCCTCTAAAGACTTGGGCTACAGTAAC
TATGGCCCCAGCATAGCCTACCAGACCAAATCCCCGGTGCCTTTGGAGTGTCCCACGGCATGTA
CTTGCAACCTGCAGATCTCTGATCTGGGTCTCAATGTCAACTGTCAAGAGCGCAAGATAGAGAG
CATCGCAGAGCTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTACCTAACAGAGAACTACATC
ACTGTTGTGCGCAGAACAGACTTCCTGGAAGCCACTGGGCTAGACCTTCTACACCTGGGGAACA
ACCGCATCTCCATGATCCAGGACCGGGCCTTTGGGGATCTAGGCAACCTGAGACGCCTCTATCT
GAATGGCAACAGGATTGAGAGGCTGAGCCCAGAGTTATTCTATGGCCTGCAGAGTCTGCAGTAT
CTCTTCCTCCAGTACAATCTCATCCGTGAGATCCAGTCTGGGACTTTTGATCCAGTCCCAAATC
TCCAGCTGCTATTCTTGAATAACAACCAATTGCAGGCCATGCCTTCAGGTGTCTTCTCCGGCCT
GACACTTCTCAGGCTAAACCTGAGGAGTAACAGCTTCACCTCCTTGCCAGTGAGTGGAGTTTTG
GATCAGCTGACTTCCCTCATTCAAATAGATCTCCATGACAACCCTTGGGATTGTACCTGTGAGG
TGGTGGGCATGAAGCTGTGGATTGAGCAGCTCAAAGTGGGAGTGTTAGTGGACGAAGTGATCTG
TAAGGCGCCCAAGAAATTCGCAGAGACCTACATGCGCTCCATCAAGTCTGAGCTGCTATGTCCA
GACTATTCTGATGTGGTGGTTTCCACGCCCACGCCCTCTTCCATCCAGTTACCATCCCGGACCA
ACGCAGCAGCGACGCCGGCTGTGAAGTTAAATAGCACTGGGACCCCCGCAGGCTTAGGTGCTGG
TACGGGGGCTTCTTCAGTGCCCTTATCTGTGTTGATTCTCAGTCTGCTGCTGGTTTTCATCATG
TCGGTCTTTGTGGCAGCAGGCCTTTTCGTGCTGGTCATGAAACGTAGGAAAAAGAACCAGAGCG
ACCACACCAGTACCAACAACTCCGACGTGAGCTCTTTCAACATGCAGTACAGCGTCTATGGGGG
TGGAGGCGGCGGCGGGGGTGGCCACCCACACGCACACGTGCACCATCGCGGGTCTGCGCTGCCC
AAGGTGAAGACTCCCGCGGGCCACGTGTATGAATACATCCCTCACCCACTGGGCCACATGTGCA
AAAACCCCATCTACCGGTCTCGAGAAGGCAATTCCGTGGAGGATTACAAAGACCTGCACGAGCT
CAAGGTCACTTACAGCAGCAACCACCACCTGCAGCAGCAGCAGCCGCCGCCGCCGCAACAGCCC
CAGCAGCAGCCCCCTCCGCAGCTGCAGCTGCAGCCTGGGGAGGAGGAGAGGCGGGAAAGCCACC
ACTTGAGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCCCGAGAGGACCTACTGTCGCCAGT
GCAGGACGCTGATCGCTTTTACAGGGGTATTCTAGAGCCAGACAAACACTGCTCCACTACCCCC
GCAGGCAGCAGCCTCCCGGAATACCCTAAATTCCCATGCAGCCCGGCTGCTTACACTTTCTCCC
CAAACTATGACCTGCGGCGTCCCCATCAGTATTTGCACCCTGGTGCAGGGGAGAGCAGGCTGCG
GGAACCGGTGCTCTACAGCCCCCCGGGTGCTGTCTTTGTAGAACCGAACCGGAACGAGTACCTG
GAGTTAAAAGCAAAACTCAATGTTGAGCCGGACTACCTCGAAGTGCTGGAAAAACAGACCACAT
TTAGTCAGTTCTAAAAACAAAGAAACTCTATCGGAGCTTTTGCATTTCGAACAAGCAAGCAAGC
AGACATACTCCACTCGGTGAACACATTTGATTAATTGTGTCCTTTCAACATTTAGGGCGAAGTG
CCTTGGCACAGGATTCTCAGCTTCGGTGGAAGCTAACTGAAAGGGTGTGCAATTTCCTCTTAAT
TTTACACGCGGGAAACATTTGTGTAAAGTAGGCACATCACTTTCTCTTCTTGTCTGTGGGGGAA
GACAGAAGGGCTTTCTGGAGGGCGATTTGCATCAAGAGTGACTGTAAACAGGTTGTGGTCCCTT
TGGCAGAGCTCTGAAGTTCTAAGAAGGGTGCGGGTGGAAGCAGCTTAGATTCTACTCATCCATT
TGCTCTTCTTTCACAGTTCTCTTCTCTTTAGAGCATTGTCATTGGTTGAGAGATTCGCACACCC
CAACGTTAATAGGAAGTTTGTTCTCTCTCACTTCTCCCACCCCTCCCACCTTCCCCCTCAATCC
TTTCCTTTGTTTTTAAAGGATGTGTTTGTATGCATTCTGGACGTTTGAATTAAAAAAAAATATC
TTGTGATCCAGAAAGGCTCACTATAGATGTGGACAAATCATTAAAATTACAGAGCTATATGATC
CATAATTGATTAGTCAAAATAACTTATTGATGAAATATACAAATATTTTATTGTAGCACCTATT
TTTATATGCACATTTAGCATTCCTCTTTCCTTCACTATTTAGCCTATGATTTTCACAGAGGCGT
TCTTGCACTGTATTAGGAGCTGCGTTTCCAAAACTAGAGTGATATTGGAAAGGCCTATTAAATA
TTTAAACACGCGGAGCACTTAATGGCAAAAGTCTTTAAAAGTACATAAAACCCATCGAATGGGA
CCTGCAATTAACAAAAAAACAAAACTAAAAAAATGAAGCTGATTGTATCCCACTCCATAAAGAG
AAAAAAGATGGGGCAGTGAATTGGTTTGTTCGATTGAGAAATGTGGAGAAGGTTTTGGTTGTAT
CCGAGAAGTTTGAAAAGTATTTTCATTAGTGAACCAAAATGATGTATTGATTTGACTACTATTG
TAGCCGATTTTTTGATTGTGTAACCAAACCCAGTTGCATTTGTACAGATCCACGTGCACTTGCA
CTTCAGAAGACCAAAATGATGGGCTGTACAAGTCTCTGTATGATGTCTTTATCCCTCTGGGCAG
ACGCTAATGACAAACAGGATCTCTGTAAGACAGAACTACTATTGTTACAGTCTCATATGTATCC
CAGCACATGTAATTTTTTAAATAGTTTCTGAATAAACACTTGATAACTATGTCAACTTTGAGGG
ATTTAAGCAATGATTCCTTGAGATGGTGGAACCACCCTTACTAACAATTTAGGAACCAGTAGCT
CTTTTCGTCCTAGTAAGAATAAGTTACCTGTATTATAAAATTTTCAATGCATACATATACATAA
AATTTACACATTTGTTGGTCCCAAAATTATGATTTTTTTCTGAATGTCGCCAAATGTGTTTATT
TATAATATTTTAATTGTATGTTTTCTCATTGGAGTGTGATTCTAGTACATGCATGGATCATGGT
AAGTAATATGTTAATTCTCATTCTTCTAACACAGTTTTCTATTTGCTGTGTATGCAGCTTGAGG
TCTTTCAATCTTGTATGAAATAGCTCATCAATTTAGAAGGATACCTTATCTAAAGAAGATGGCT
GTCATAAATGTTTTAAGATGTTTGTGGGGATAAGCTGTGCACTTCTGAAAAAGGTTTTCCAGTG
AGTTTAAATGAGCATTTAACGAGAGGAAATGTTTGACTCAATCCGAACTCAAAAAGCAAGCAGC
ACTTCATTGCTAAGGCTGTTTCTTTGCCCCTCACGGTCCCACCTGGAACGTGGGCGATATCAAG
GGCTGCTTATGAACTTCCTGTT

hide sequence

RefSeq Acc Id:

XM_006252445 ⟹ XP_006252507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	95,262,449 - 95,269,858 (+)	NCBI
mRatBN7.2	15	88,848,123 - 88,858,809 (+)	NCBI
Rnor_6.0	15	96,817,908 - 96,826,760 (+)	NCBI
Rnor_5.0	15	100,296,097 - 100,304,915 (+)	NCBI

Sequence:

show sequence

CGCCTGCTTCGCCCCGGGCCCATCATGTCTGCTGCAGCTTGGCTCGCACCAGCGGCGCGACAAT
AAACAAGTGCGGCGGACGGGGCCCTGCACCCGCTACCCAGCAGATGTGACTGCCTTCTTAGATC
CTATGAGAGAAGACGTGACTTTTTCTGAGTTTCTTTCTTTTTTTTTTTTTTTAGAGCGTCCCAA
GCTGCCAGGACATGCTACAGGCGTAGAGCAACGCTGCTCCTACCTCCTCGGACCCCTCAAAGGA
TGTCGGAGATAAAGAGTTGCAAATAATGAGGATCGTGCGCCGCATCTGGGGAGGGATAGCAAAA
ATCCGCTGCAAACCCCGGGAGCGGTGAAGCCGCCAAGAGGATGCGGGAGCCTTTCAAATACTAA
TTAGGGGCCGCGACTGCAGGTTCGCCTTGGGGACAGAGGCATCCAGGCTCCGGTGGTCGTGGCG
TGTGGGGGAGAGGAGCACAGCGGAGGAACCGCCGCCGAAGCAGCCCTGGGGCCAGTACCACCTT
CTCTCGCCCCCTCACTACCATGTACAGTGTGCGCTGCAAGAAGAAGGCGGGCGATGAACGCACA
CCCTCGAGCCCCACTCCCTCTGGTTCGTCCTGGGGCGTGCGACACTGACTAGGGGGGAATGTGG
TGAAGACGCCGACCCCGAGAGGCTAGGGGGGAGGGGAGGGCGGCCCGCGCGATCCCAGGCCGGA
GGGTGCCAAGAGCCCGAGGCGGCTGGAGGGGGCGGCTGCCATCGCTGGGTCGGAGAAAGTTGCC
CCCAGTGCAGATGGGAACAGAGGTAAAATGCACGTTTGCTGCCCCCCAGTAACTTTGGAACAGG
ACCTTCACAGAAAAATGCATAGCTGGATGCTGCACACCCTAGCATTTGCTGTAACATCTCTCGT
CCTCTCCTGTGCAGAAACCATCGATTATTATGGGGAAATCTGTGACAATGCATGTCCTTGTGAG
GAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGAGGGATCATCAGTCTCTCTGAAATTA
GCCCTCCCCGTTTCCCAATCTATCACCTCTTATTGTCTGGAAACCTTCTGAACCGCCTCTATCC
CAATGAGTTTGTTAATTACACTGGGGCTTCAATTTTACATCTGGGTAGCAATGTTATCCAAGAC
ATTGAGACCGGGGCTTTCCATGGGCTGCGGGGTTTGAGGCGACTGCATCTAAACAATAATAAAT
TGGAACTTCTGCGAGACGATACCTTTCTTGGCTTGGAGAACTTAGAGTACCTGCAGGTCGATTA
CAATTACATCAGTGTCATTGAACCCAATGCTTTTGGGAAACTGCATATGCTGCAGGTGCTTATC
CTCAATGACAACCTCTTGTCAGGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGCACT
TGGACTTGCGGGGGAACAGGCTAAAACTTCTGCCCTATGTGGGGCTGTTGCAACACATGGATAA
AGTTGTGGAATTACAGCTGGAGGAAAACCCCTGGAATTGCTCATGTGAACTAATTTCTCTCAAG
GATTGGTTGGACAGCATCTCCTACTCAGCCCTTGTGGGCGATGTGGTCTGTGAGACCCCCTTCC
GTTTACATGGCAGGGATTTGGATGAGGTATCCAAGCAGGAACTTTGTCCAAGGAAACTTATTTC
TGACTATGAGATGAGGCCACAGACTCCTTTAAGCACCACGGGGTATCTACATACCACCCCAGCT
TCTGTAAACTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCCTCTGAAGCCTCCCAAGG
GGACCCGCCAGCCCAACAAACCCAGAGTGCGCCCCACCTCTAGGCAGCCCTCTAAAGACTTGGG
CTACAGTAACTATGGCCCCAGCATAGCCTACCAGACCAAATCCCCGGTGCCTTTGGAGTGTCCC
ACGGCATGTACTTGCAACCTGCAGATCTCTGATCTGGGTCTCAATGTCAACTGTCAAGAGCGCA
AGATAGAGAGCATCGCAGAGCTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTACCTAACAGA
GAACTACATCACTGTTGTGCGCAGAACAGACTTCCTGGAAGCCACTGGGCTAGACCTTCTACAC
CTGGGGAACAACCGCATCTCCATGATCCAGGACCGGGCCTTTGGGGATCTAGGCAACCTGAGAC
GCCTCTATCTGAATGGCAACAGGATTGAGAGGCTGAGCCCAGAGTTATTCTATGGCCTGCAGAG
TCTGCAGTATCTCTTCCTCCAGTACAATCTCATCCGTGAGATCCAGTCTGGGACTTTTGATCCA
GTCCCAAATCTCCAGCTGCTATTCTTGAATAACAACCAATTGCAGGCCATGCCTTCAGGTGTCT
TCTCCGGCCTGACACTTCTCAGGCTAAACCTGAGGAGTAACAGCTTCACCTCCTTGCCAGTGAG
TGGAGTTTTGGATCAGCTGACTTCCCTCATTCAAATAGATCTCCATGACAACCCTTGGGATTGT
ACCTGTGAGGTGGTGGGCATGAAGCTGTGGATTGAGCAGCTCAAAGTGGGAGTGTTAGTGGACG
AAGTGATCTGTAAGGCGCCCAAGAAATTCGCAGAGACCTACATGCGCTCCATCAAGTCTGAGCT
GCTATGTCCAGACTATTCTGATGTGGTGGTTTCCACGCCCACGCCCTCTTCCATCCAGTTACCA
TCCCGGACCAACGCAGCAGCGACGCCGGCTGTGAAGTTAAATAGCACTGGGACCCCCGCAGGCT
TAGGTGCTGGTACGGGGGCTTCTTCAGTGCCCTTATCTGTGTTGATTCTCAGTCTGCTGCTGGT
TTTCATCATGTCGGTCTTTGTGGCAGCAGGCCTTTTCGTGCTGGTCATGAAACGTAGGAAAAAG
AACCAGAGCGACCACACCAGTACCAACAACTCCGACGTGAGCTCTTTCAACATGCAGTACAGCG
TCTATGGGGGTGGAGGCGGCGGCGGGGGTGGCCACCCACACGCACACGTGCACCATCGCGGGTC
TGCGCTGCCCAAGGTGAAGACTCCCGCGGGCCACGTGTATGAATACATCCCTCACCCACTGGGC
CACATGTGCAAAAACCCCATCTACCGGTCTCGAGAAGGCAATTCCGTGGAGGATTACAAAGACC
TGCACGAGCTCAAGGTCACTTACAGCAGCAACCACCACCTGCAGCAGCAGCAGCCGCCGCCGCC
GCAACAGCCCCAGCAGCAGCCCCCTCCGCAGCTGCAGCTGCAGCCTGGGGAGGAGGAGAGGCGG
GAAAGCCACCACTTGAGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCCCGAGAGGACCTAC
TGTCGCCAGTGCAGGACGCTGATCGCTTTTACAGGGGTATTCTAGAGCCAGACAAACACTGCTC
CACTACCCCCGCAGGCAGCAGCCTCCCGGAATACCCTAAATTCCCATGCAGCCCGGCTGCTTAC
ACTTTCTCCCCAAACTATGACCTGCGGCGTCCCCATCAGTATTTGCACCCTGGTGCAGGGGAGA
GCAGGCTGCGGGAACCGGTGCTCTACAGCCCCCCGGGTGCTGTCTTTGTAGAACCGAACCGGAA
CGAGTACCTGGAGTTAAAAGCAAAACTCAATGTTGAGCCGGACTACCTCGAAGTGCTGGAAAAA
CAGACCACATTTAGTCAGTTCTAAAAACAAAGAAACTCTATCGGAGCTTTTGCATTTCGAACAA
GCAAGCAAGCAGACATACTCCACTCGGTGAACACATTTGATTAATTGTGTCCTTTCAACATTTA
GGGCGAAGTGCCTTGGCACAGGATTCTCAGCTTCGGTGGAAGCTAACTGAAAGGGTGTGCAATT
TCCTCTTAATTTTACACGCGGGAAACATTTGTGTAAAGTAGGCACATCACTTTCTCTTCTTGTC
TGTGGGGGAAGACAGAAGGGCTTTCTGGAGGGCGATTTGCATCAAGAGTGACTGTAAACAGGTT
GTGGTCCCTTTGGCAGAGCTCTGAAGTTCTAAGAAGGGTGCGGGTGGAAGCAGCTTAGATTCTA
CTCATCCATTTGCTCTTCTTTCACAGTTCTCTTCTCTTTAGAGCATTGTCATTGGTTGAGAGAT
TCGCACACCCCAACGTTAATAGGAAGTTTGTTCTCTCTCACTTCTCCCACCCCTCCCACCTTCC
CCCTCAATCCTTTCCTTTGTTTTTAAAGGATGTGTTTGTATGCATTCTGGACGTTTGAATTAAA
AAAAAATATCTTGTGATCCAGAAAGGCTCACTATAGATGTGGACAAATCATTAAAATTACAGAG
CTATATGATCCATAATTGATTAGTCAAAATAACTTATTGATGAAATATACAAATATTTTATTGT
AGCACCTATTTTTATATGCACATTTAGCATTCCTCTTTCCTTCACTATTTAGCCTATGATTTTC
ACAGAGGCGTTCTTGCACTGTATTAGGAGCTGCGTTTCCAAAACTAGAGTGATATTGGAAAGGC
CTATTAAATATTTAAACACGCGGAGCACTTAATGGCAAAAGTCTTTAAAAGTACATAAAACCCA
TCGAATGGGACCTGCAATTAACAAAAAAACAAAACTAAAAAAATGAAGCTGATTGTATCCCACT
CCATAAAGAGAAAAAAGATGGGGCAGTGAATTGGTTTGTTCGATTGAGAAATGTGGAGAAGGTT
TTGGTTGTATCCGAGAAGTTTGAAAAGTATTTTCATTAGTGAACCAAAATGATGTATTGATTTG
ACTACTATTGTAGCCGATTTTTTGATTGTGTAACCAAACCCAGTTGCATTTGTACAGATCCACG
TGCACTTGCACTTCAGAAGACCAAAATGATGGGCTGTACAAGTCTCTGTATGATGTCTTTATCC
CTCTGGGCAGACGCTAATGACAAACAGGATCTCTGTAAGACAGAACTACTATTGTTACAGTCTC
ATATGTATCCCAGCACATGTAATTTTTTAAATAGTTTCTGAATAAACACTTGATAACTATGTCA
ACTTTGAGGGATTTAAGCAATGATTCCTTGAGATGGTGGAACCACCCTTACTAACAATTTAGGA
ACCAGTAGCTCTTTTCGTCCTAGTAAGAATAAGTTACCTGTATTATAAAATTTTCAATGCATAC
ATATACATAAAATTTACACATTTGTTGGTCCCAAAATTATGATTTTTTTCTGAATGTCGCCAAA
TGTGTTTATTTATAATATTTTAATTGTATGTTTTCTCATTGGAGTGTGATTCTAGTACATGCAT
GGATCATGGTAAGTAATATGTTAATTCTCATTCTTCTAACACAGTTTTCTATTTGCTGTGTATG
CAGCTTGAGGTCTTTCAATCTTGTATGAAATAGCTCATCAATTTAGAAGGATACCTTATCTAAA
GAAGATGGCTGTCATAAATGTTTTAAGATGTTTGTGGGGATAAGCTGTGCACTTCTGAAAAAGG
TTTTCCAGTGAGTTTAAATGAGCATTTAACGAGAGGAAATGTTTGACTCAATCCGAACTCAAAA
AGCAAGCAGCACTTCATTGCTAAGGCTGTTTCTTTGCCCCTCACGGTCCCACCTGGAACGTGGG
CGATATCAAGGGCTGCTTATGAACTTCCTGTTTAAGGAACAATTGCCAGGGCATTCTGCCACAA
AGAGGCAGCATTCACCCATGAGTAAATTGACAGTAACTACTTCCATTCAGATTGAAATGGTAGA
CACAGTTTCCC

hide sequence

RefSeq Acc Id:

XM_006252446 ⟹ XP_006252508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	95,262,985 - 95,269,858 (+)	NCBI
mRatBN7.2	15	88,848,745 - 88,858,809 (+)	NCBI
Rnor_6.0	15	96,819,179 - 96,826,760 (+)	NCBI
Rnor_5.0	15	100,296,097 - 100,304,915 (+)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTGCACACCCCAAAGAGGTGTTTTTCTAAAGGGT
AGCTATGATGAGTGGGCCCCTGAGATGTGAGACGGGGAGGTAAAATGCACGTTTGCTGCCCCCC
AGTAACTTTGGAACAGGACCTTCACAGAAAAATGCATAGCTGGATGCTGCACACCCTAGCATTT
GCTGTAACATCTCTCGTCCTCTCCTGTGCAGAAACCATCGATTATTATGGGGAAATCTGTGACA
ATGCATGTCCTTGTGAGGAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGAGGGATCAT
CAGTCTCTCTGAAATTAGCCCTCCCCGTTTCCCAATCTATCACCTCTTATTGTCTGGAAACCTT
CTGAACCGCCTCTATCCCAATGAGTTTGTTAATTACACTGGGGCTTCAATTTTACATCTGGGTA
GCAATGTTATCCAAGACATTGAGACCGGGGCTTTCCATGGGCTGCGGGGTTTGAGGCGACTGCA
TCTAAACAATAATAAATTGGAACTTCTGCGAGACGATACCTTTCTTGGCTTGGAGAACTTAGAG
TACCTGCAGGTCGATTACAATTACATCAGTGTCATTGAACCCAATGCTTTTGGGAAACTGCATA
TGCTGCAGGTGCTTATCCTCAATGACAACCTCTTGTCAGGTTTACCCAACAATCTTTTCCGTTT
TGTGCCCTTAACGCACTTGGACTTGCGGGGGAACAGGCTAAAACTTCTGCCCTATGTGGGGCTG
TTGCAACACATGGATAAAGTTGTGGAATTACAGCTGGAGGAAAACCCCTGGAATTGCTCATGTG
AACTAATTTCTCTCAAGGATTGGTTGGACAGCATCTCCTACTCAGCCCTTGTGGGCGATGTGGT
CTGTGAGACCCCCTTCCGTTTACATGGCAGGGATTTGGATGAGGTATCCAAGCAGGAACTTTGT
CCAAGGAAACTTATTTCTGACTATGAGATGAGGCCACAGACTCCTTTAAGCACCACGGGGTATC
TACATACCACCCCAGCTTCTGTAAACTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCC
TCTGAAGCCTCCCAAGGGGACCCGCCAGCCCAACAAACCCAGAGTGCGCCCCACCTCTAGGCAG
CCCTCTAAAGACTTGGGCTACAGTAACTATGGCCCCAGCATAGCCTACCAGACCAAATCCCCGG
TGCCTTTGGAGTGTCCCACGGCATGTACTTGCAACCTGCAGATCTCTGATCTGGGTCTCAATGT
CAACTGTCAAGAGCGCAAGATAGAGAGCATCGCAGAGCTGCAGCCCAAGCCCTACAATCCCAAG
AAAATGTACCTAACAGAGAACTACATCACTGTTGTGCGCAGAACAGACTTCCTGGAAGCCACTG
GGCTAGACCTTCTACACCTGGGGAACAACCGCATCTCCATGATCCAGGACCGGGCCTTTGGGGA
TCTAGGCAACCTGAGACGCCTCTATCTGAATGGCAACAGGATTGAGAGGCTGAGCCCAGAGTTA
TTCTATGGCCTGCAGAGTCTGCAGTATCTCTTCCTCCAGTACAATCTCATCCGTGAGATCCAGT
CTGGGACTTTTGATCCAGTCCCAAATCTCCAGCTGCTATTCTTGAATAACAACCAATTGCAGGC
CATGCCTTCAGGTGTCTTCTCCGGCCTGACACTTCTCAGGCTAAACCTGAGGAGTAACAGCTTC
ACCTCCTTGCCAGTGAGTGGAGTTTTGGATCAGCTGACTTCCCTCATTCAAATAGATCTCCATG
ACAACCCTTGGGATTGTACCTGTGAGGTGGTGGGCATGAAGCTGTGGATTGAGCAGCTCAAAGT
GGGAGTGTTAGTGGACGAAGTGATCTGTAAGGCGCCCAAGAAATTCGCAGAGACCTACATGCGC
TCCATCAAGTCTGAGCTGCTATGTCCAGACTATTCTGATGTGGTGGTTTCCACGCCCACGCCCT
CTTCCATCCAGTTACCATCCCGGACCAACGCAGCAGCGACGCCGGCTGTGAAGTTAAATAGCAC
TGGGACCCCCGCAGGCTTAGGTGCTGGTACGGGGGCTTCTTCAGTGCCCTTATCTGTGTTGATT
CTCAGTCTGCTGCTGGTTTTCATCATGTCGGTCTTTGTGGCAGCAGGCCTTTTCGTGCTGGTCA
TGAAACGTAGGAAAAAGAACCAGAGCGACCACACCAGTACCAACAACTCCGACGTGAGCTCTTT
CAACATGCAGTACAGCGTCTATGGGGGTGGAGGCGGCGGCGGGGGTGGCCACCCACACGCACAC
GTGCACCATCGCGGGTCTGCGCTGCCCAAGGTGAAGACTCCCGCGGGCCACGTGTATGAATACA
TCCCTCACCCACTGGGCCACATGTGCAAAAACCCCATCTACCGGTCTCGAGAAGGCAATTCCGT
GGAGGATTACAAAGACCTGCACGAGCTCAAGGTCACTTACAGCAGCAACCACCACCTGCAGCAG
CAGCAGCCGCCGCCGCCGCAACAGCCCCAGCAGCAGCCCCCTCCGCAGCTGCAGCTGCAGCCTG
GGGAGGAGGAGAGGCGGGAAAGCCACCACTTGAGGAGCCCCGCCTACAGCGTCAGCACCATCGA
GCCCCGAGAGGACCTACTGTCGCCAGTGCAGGACGCTGATCGCTTTTACAGGGGTATTCTAGAG
CCAGACAAACACTGCTCCACTACCCCCGCAGGCAGCAGCCTCCCGGAATACCCTAAATTCCCAT
GCAGCCCGGCTGCTTACACTTTCTCCCCAAACTATGACCTGCGGCGTCCCCATCAGTATTTGCA
CCCTGGTGCAGGGGAGAGCAGGCTGCGGGAACCGGTGCTCTACAGCCCCCCGGGTGCTGTCTTT
GTAGAACCGAACCGGAACGAGTACCTGGAGTTAAAAGCAAAACTCAATGTTGAGCCGGACTACC
TCGAAGTGCTGGAAAAACAGACCACATTTAGTCAGTTCTAAAAACAAAGAAACTCTATCGGAGC
TTTTGCATTTCGAACAAGCAAGCAAGCAGACATACTCCACTCGGTGAACACATTTGATTAATTG
TGTCCTTTCAACATTTAGGGCGAAGTGCCTTGGCACAGGATTCTCAGCTTCGGTGGAAGCTAAC
TGAAAGGGTGTGCAATTTCCTCTTAATTTTACACGCGGGAAACATTTGTGTAAAGTAGGCACAT
CACTTTCTCTTCTTGTCTGTGGGGGAAGACAGAAGGGCTTTCTGGAGGGCGATTTGCATCAAGA
GTGACTGTAAACAGGTTGTGGTCCCTTTGGCAGAGCTCTGAAGTTCTAAGAAGGGTGCGGGTGG
AAGCAGCTTAGATTCTACTCATCCATTTGCTCTTCTTTCACAGTTCTCTTCTCTTTAGAGCATT
GTCATTGGTTGAGAGATTCGCACACCCCAACGTTAATAGGAAGTTTGTTCTCTCTCACTTCTCC
CACCCCTCCCACCTTCCCCCTCAATCCTTTCCTTTGTTTTTAAAGGATGTGTTTGTATGCATTC
TGGACGTTTGAATTAAAAAAAAATATCTTGTGATCCAGAAAGGCTCACTATAGATGTGGACAAA
TCATTAAAATTACAGAGCTATATGATCCATAATTGATTAGTCAAAATAACTTATTGATGAAATA
TACAAATATTTTATTGTAGCACCTATTTTTATATGCACATTTAGCATTCCTCTTTCCTTCACTA
TTTAGCCTATGATTTTCACAGAGGCGTTCTTGCACTGTATTAGGAGCTGCGTTTCCAAAACTAG
AGTGATATTGGAAAGGCCTATTAAATATTTAAACACGCGGAGCACTTAATGGCAAAAGTCTTTA
AAAGTACATAAAACCCATCGAATGGGACCTGCAATTAACAAAAAAACAAAACTAAAAAAATGAA
GCTGATTGTATCCCACTCCATAAAGAGAAAAAAGATGGGGCAGTGAATTGGTTTGTTCGATTGA
GAAATGTGGAGAAGGTTTTGGTTGTATCCGAGAAGTTTGAAAAGTATTTTCATTAGTGAACCAA
AATGATGTATTGATTTGACTACTATTGTAGCCGATTTTTTGATTGTGTAACCAAACCCAGTTGC
ATTTGTACAGATCCACGTGCACTTGCACTTCAGAAGACCAAAATGATGGGCTGTACAAGTCTCT
GTATGATGTCTTTATCCCTCTGGGCAGACGCTAATGACAAACAGGATCTCTGTAAGACAGAACT
ACTATTGTTACAGTCTCATATGTATCCCAGCACATGTAATTTTTTAAATAGTTTCTGAATAAAC
ACTTGATAACTATGTCAACTTTGAGGGATTTAAGCAATGATTCCTTGAGATGGTGGAACCACCC
TTACTAACAATTTAGGAACCAGTAGCTCTTTTCGTCCTAGTAAGAATAAGTTACCTGTATTATA
AAATTTTCAATGCATACATATACATAAAATTTACACATTTGTTGGTCCCAAAATTATGATTTTT
TTCTGAATGTCGCCAAATGTGTTTATTTATAATATTTTAATTGTATGTTTTCTCATTGGAGTGT
GATTCTAGTACATGCATGGATCATGGTAAGTAATATGTTAATTCTCATTCTTCTAACACAGTTT
TCTATTTGCTGTGTATGCAGCTTGAGGTCTTTCAATCTTGTATGAAATAGCTCATCAATTTAGA
AGGATACCTTATCTAAAGAAGATGGCTGTCATAAATGTTTTAAGATGTTTGTGGGGATAAGCTG
TGCACTTCTGAAAAAGGTTTTCCAGTGAGTTTAAATGAGCATTTAACGAGAGGAAATGTTTGAC
TCAATCCGAACTCAAAAAGCAAGCAGCACTTCATTGCTAAGGCTGTTTCTTTGCCCCTCACGGT
CCCACCTGGAACGTGGGCGATATCAAGGGCTGCTTATGAACTTCCTGTTTAAGGAACAATTGCC
AGGGCATTCTGCCACAAAGAGGCAGCATTCACCCATGAGTAAATTGACAGTAACTACTTCCATT
CAGATTGAAATGGTAGACACAGTTTCCC

hide sequence

RefSeq Acc Id:

XM_006252447 ⟹ XP_006252509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	95,263,802 - 95,269,858 (+)	NCBI
mRatBN7.2	15	88,849,562 - 88,858,809 (+)	NCBI
Rnor_6.0	15	96,819,644 - 96,826,760 (+)	NCBI
Rnor_5.0	15	100,296,097 - 100,304,915 (+)	NCBI

Sequence:

show sequence

CTTTTTTCTTTTCTTTTCTTTCTTTCATTTTTTTTTTAAATAAACCGAGAACGTGTGGTGCACC
GCGATTTTACAACGGCGCTGCTTTTCCCAGTCAGTCTGTTAGCATTCCCAGACCATTCAACTTT
ATTTTCTCAAATCTTCTGTCTCCTTTGATGGCTGGGGACTACGGGGGAGGGGGCGAATGGACAG
GAGGTTTGGAAAAGGTTGTTCGACCTGGCTAGCCAGAACTGAATTAAAGTTGTAAACGTTCGAA
TTTAATACTGGCTGGGCACAATTTACAATGGATTCTGAGATGGGGAAGGAGGTGAATGGGGGCG
GGGAAGCACCGCGAGGGAGGGGGAGGGGATCCAACCCAGCTGAATGGATGTGCATATTTGATCC
AGCGGAGAACCCAGATTTCAAGGAGGTAAAATGCACGTTTGCTGCCCCCCAGTAACTTTGGAAC
AGGACCTTCACAGAAAAATGCATAGCTGGATGCTGCACACCCTAGCATTTGCTGTAACATCTCT
CGTCCTCTCCTGTGCAGAAACCATCGATTATTATGGGGAAATCTGTGACAATGCATGTCCTTGT
GAGGAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGAGGGATCATCAGTCTCTCTGAAA
TTAGCCCTCCCCGTTTCCCAATCTATCACCTCTTATTGTCTGGAAACCTTCTGAACCGCCTCTA
TCCCAATGAGTTTGTTAATTACACTGGGGCTTCAATTTTACATCTGGGTAGCAATGTTATCCAA
GACATTGAGACCGGGGCTTTCCATGGGCTGCGGGGTTTGAGGCGACTGCATCTAAACAATAATA
AATTGGAACTTCTGCGAGACGATACCTTTCTTGGCTTGGAGAACTTAGAGTACCTGCAGGTCGA
TTACAATTACATCAGTGTCATTGAACCCAATGCTTTTGGGAAACTGCATATGCTGCAGGTGCTT
ATCCTCAATGACAACCTCTTGTCAGGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGC
ACTTGGACTTGCGGGGGAACAGGCTAAAACTTCTGCCCTATGTGGGGCTGTTGCAACACATGGA
TAAAGTTGTGGAATTACAGCTGGAGGAAAACCCCTGGAATTGCTCATGTGAACTAATTTCTCTC
AAGGATTGGTTGGACAGCATCTCCTACTCAGCCCTTGTGGGCGATGTGGTCTGTGAGACCCCCT
TCCGTTTACATGGCAGGGATTTGGATGAGGTATCCAAGCAGGAACTTTGTCCAAGGAAACTTAT
TTCTGACTATGAGATGAGGCCACAGACTCCTTTAAGCACCACGGGGTATCTACATACCACCCCA
GCTTCTGTAAACTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCCTCTGAAGCCTCCCA
AGGGGACCCGCCAGCCCAACAAACCCAGAGTGCGCCCCACCTCTAGGCAGCCCTCTAAAGACTT
GGGCTACAGTAACTATGGCCCCAGCATAGCCTACCAGACCAAATCCCCGGTGCCTTTGGAGTGT
CCCACGGCATGTACTTGCAACCTGCAGATCTCTGATCTGGGTCTCAATGTCAACTGTCAAGAGC
GCAAGATAGAGAGCATCGCAGAGCTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTACCTAAC
AGAGAACTACATCACTGTTGTGCGCAGAACAGACTTCCTGGAAGCCACTGGGCTAGACCTTCTA
CACCTGGGGAACAACCGCATCTCCATGATCCAGGACCGGGCCTTTGGGGATCTAGGCAACCTGA
GACGCCTCTATCTGAATGGCAACAGGATTGAGAGGCTGAGCCCAGAGTTATTCTATGGCCTGCA
GAGTCTGCAGTATCTCTTCCTCCAGTACAATCTCATCCGTGAGATCCAGTCTGGGACTTTTGAT
CCAGTCCCAAATCTCCAGCTGCTATTCTTGAATAACAACCAATTGCAGGCCATGCCTTCAGGTG
TCTTCTCCGGCCTGACACTTCTCAGGCTAAACCTGAGGAGTAACAGCTTCACCTCCTTGCCAGT
GAGTGGAGTTTTGGATCAGCTGACTTCCCTCATTCAAATAGATCTCCATGACAACCCTTGGGAT
TGTACCTGTGAGGTGGTGGGCATGAAGCTGTGGATTGAGCAGCTCAAAGTGGGAGTGTTAGTGG
ACGAAGTGATCTGTAAGGCGCCCAAGAAATTCGCAGAGACCTACATGCGCTCCATCAAGTCTGA
GCTGCTATGTCCAGACTATTCTGATGTGGTGGTTTCCACGCCCACGCCCTCTTCCATCCAGTTA
CCATCCCGGACCAACGCAGCAGCGACGCCGGCTGTGAAGTTAAATAGCACTGGGACCCCCGCAG
GCTTAGGTGCTGGTACGGGGGCTTCTTCAGTGCCCTTATCTGTGTTGATTCTCAGTCTGCTGCT
GGTTTTCATCATGTCGGTCTTTGTGGCAGCAGGCCTTTTCGTGCTGGTCATGAAACGTAGGAAA
AAGAACCAGAGCGACCACACCAGTACCAACAACTCCGACGTGAGCTCTTTCAACATGCAGTACA
GCGTCTATGGGGGTGGAGGCGGCGGCGGGGGTGGCCACCCACACGCACACGTGCACCATCGCGG
GTCTGCGCTGCCCAAGGTGAAGACTCCCGCGGGCCACGTGTATGAATACATCCCTCACCCACTG
GGCCACATGTGCAAAAACCCCATCTACCGGTCTCGAGAAGGCAATTCCGTGGAGGATTACAAAG
ACCTGCACGAGCTCAAGGTCACTTACAGCAGCAACCACCACCTGCAGCAGCAGCAGCCGCCGCC
GCCGCAACAGCCCCAGCAGCAGCCCCCTCCGCAGCTGCAGCTGCAGCCTGGGGAGGAGGAGAGG
CGGGAAAGCCACCACTTGAGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCCCGAGAGGACC
TACTGTCGCCAGTGCAGGACGCTGATCGCTTTTACAGGGGTATTCTAGAGCCAGACAAACACTG
CTCCACTACCCCCGCAGGCAGCAGCCTCCCGGAATACCCTAAATTCCCATGCAGCCCGGCTGCT
TACACTTTCTCCCCAAACTATGACCTGCGGCGTCCCCATCAGTATTTGCACCCTGGTGCAGGGG
AGAGCAGGCTGCGGGAACCGGTGCTCTACAGCCCCCCGGGTGCTGTCTTTGTAGAACCGAACCG
GAACGAGTACCTGGAGTTAAAAGCAAAACTCAATGTTGAGCCGGACTACCTCGAAGTGCTGGAA
AAACAGACCACATTTAGTCAGTTCTAAAAACAAAGAAACTCTATCGGAGCTTTTGCATTTCGAA
CAAGCAAGCAAGCAGACATACTCCACTCGGTGAACACATTTGATTAATTGTGTCCTTTCAACAT
TTAGGGCGAAGTGCCTTGGCACAGGATTCTCAGCTTCGGTGGAAGCTAACTGAAAGGGTGTGCA
ATTTCCTCTTAATTTTACACGCGGGAAACATTTGTGTAAAGTAGGCACATCACTTTCTCTTCTT
GTCTGTGGGGGAAGACAGAAGGGCTTTCTGGAGGGCGATTTGCATCAAGAGTGACTGTAAACAG
GTTGTGGTCCCTTTGGCAGAGCTCTGAAGTTCTAAGAAGGGTGCGGGTGGAAGCAGCTTAGATT
CTACTCATCCATTTGCTCTTCTTTCACAGTTCTCTTCTCTTTAGAGCATTGTCATTGGTTGAGA
GATTCGCACACCCCAACGTTAATAGGAAGTTTGTTCTCTCTCACTTCTCCCACCCCTCCCACCT
TCCCCCTCAATCCTTTCCTTTGTTTTTAAAGGATGTGTTTGTATGCATTCTGGACGTTTGAATT
AAAAAAAAATATCTTGTGATCCAGAAAGGCTCACTATAGATGTGGACAAATCATTAAAATTACA
GAGCTATATGATCCATAATTGATTAGTCAAAATAACTTATTGATGAAATATACAAATATTTTAT
TGTAGCACCTATTTTTATATGCACATTTAGCATTCCTCTTTCCTTCACTATTTAGCCTATGATT
TTCACAGAGGCGTTCTTGCACTGTATTAGGAGCTGCGTTTCCAAAACTAGAGTGATATTGGAAA
GGCCTATTAAATATTTAAACACGCGGAGCACTTAATGGCAAAAGTCTTTAAAAGTACATAAAAC
CCATCGAATGGGACCTGCAATTAACAAAAAAACAAAACTAAAAAAATGAAGCTGATTGTATCCC
ACTCCATAAAGAGAAAAAAGATGGGGCAGTGAATTGGTTTGTTCGATTGAGAAATGTGGAGAAG
GTTTTGGTTGTATCCGAGAAGTTTGAAAAGTATTTTCATTAGTGAACCAAAATGATGTATTGAT
TTGACTACTATTGTAGCCGATTTTTTGATTGTGTAACCAAACCCAGTTGCATTTGTACAGATCC
ACGTGCACTTGCACTTCAGAAGACCAAAATGATGGGCTGTACAAGTCTCTGTATGATGTCTTTA
TCCCTCTGGGCAGACGCTAATGACAAACAGGATCTCTGTAAGACAGAACTACTATTGTTACAGT
CTCATATGTATCCCAGCACATGTAATTTTTTAAATAGTTTCTGAATAAACACTTGATAACTATG
TCAACTTTGAGGGATTTAAGCAATGATTCCTTGAGATGGTGGAACCACCCTTACTAACAATTTA
GGAACCAGTAGCTCTTTTCGTCCTAGTAAGAATAAGTTACCTGTATTATAAAATTTTCAATGCA
TACATATACATAAAATTTACACATTTGTTGGTCCCAAAATTATGATTTTTTTCTGAATGTCGCC
AAATGTGTTTATTTATAATATTTTAATTGTATGTTTTCTCATTGGAGTGTGATTCTAGTACATG
CATGGATCATGGTAAGTAATATGTTAATTCTCATTCTTCTAACACAGTTTTCTATTTGCTGTGT
ATGCAGCTTGAGGTCTTTCAATCTTGTATGAAATAGCTCATCAATTTAGAAGGATACCTTATCT
AAAGAAGATGGCTGTCATAAATGTTTTAAGATGTTTGTGGGGATAAGCTGTGCACTTCTGAAAA
AGGTTTTCCAGTGAGTTTAAATGAGCATTTAACGAGAGGAAATGTTTGACTCAATCCGAACTCA
AAAAGCAAGCAGCACTTCATTGCTAAGGCTGTTTCTTTGCCCCTCACGGTCCCACCTGGAACGT
GGGCGATATCAAGGGCTGCTTATGAACTTCCTGTTTAAGGAACAATTGCCAGGGCATTCTGCCA
CAAAGAGGCAGCATTCACCCATGAGTAAATTGACAGTAACTACTTCCATTCAGATTGAAATGGT
AGACACAGTTTCCC

hide sequence

RefSeq Acc Id:

XM_063274343 ⟹ XP_063130413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	95,261,397 - 95,269,858 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100754	(Get FASTA)	NCBI Sequence Viewer
	NP_001418460	(Get FASTA)	NCBI Sequence Viewer
	NP_001418461	(Get FASTA)	NCBI Sequence Viewer
	NP_001418462	(Get FASTA)	NCBI Sequence Viewer
	XP_006252507	(Get FASTA)	NCBI Sequence Viewer
	XP_006252508	(Get FASTA)	NCBI Sequence Viewer
	XP_006252509	(Get FASTA)	NCBI Sequence Viewer
	XP_063130413	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02500	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066274
	ENSRNOP00000066274.1
	ENSRNOP00000104303
	ENSRNOP00000104303.1
	ENSRNOP00000104477
	ENSRNOP00000104477.1

RefSeq Acc Id:

NP_001100754 ⟸ NM_001107284

- UniProtKB:

M0R9U3 (UniProtKB/TrEMBL), A6HUD7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHVCCPPVTLEQDLHRKMHSWMLHTLAFAVTSLVLSCAETIDYYGEICDNACPCEEKDGILTVS
CENRGIISLSEISPPRFPIYHLLLSGNLLNRLYPNEFVNYTGASILHLGSNVIQDIETGAFHGL
RGLRRLHLNNNKLELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHMLQVLILNDNLLSGL
PNNLFRFVPLTHLDLRGNRLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYS
ALVGDVVCETPFRLHGRDLDEVSKQELCPRKLISDYEMRPQTPLSTTGYLHTTPASVNSVATSS
SAVYKPPLKPPKGTRQPNKPRVRPTSRQPSKDLGYSNYGPSIAYQTKSPVPLECPTACTCNLQI
SDLGLNVNCQERKIESIAELQPKPYNPKKMYLTENYITVVRRTDFLEATGLDLLHLGNNRISMI
QDRAFGDLGNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQYNLIREIQSGTFDPVPNLQLLFL
NNNQLQAMPSGVFSGLTLLRLNLRSNSFTSLPVSGVLDQLTSLIQIDLHDNPWDCTCEVVGMKL
WIEQLKVGVLVDEVICKAPKKFAETYMRSIKSELLCPDYSDVVVSTPTPSSIQLPSRTNAAATP
AVKLNSTGTPAGLGAGTGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQSDHTSTN
NSDVSSFNMQYSVYGGGGGGGGGHPHAHVHHRGSALPKVKTPAGHVYEYIPHPLGHMCKNPIYR
SREGNSVEDYKDLHELKVTYSSNHHLQQQQPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPA
YSVSTIEPREDLLSPVQDADRFYRGILEPDKHCSTTPAGSSLPEYPKFPCSPAAYTFSPNYDLR
RPHQYLHPGAGESRLREPVLYSPPGAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF

hide sequence

RefSeq Acc Id:

XP_006252507 ⟸ XM_006252445

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHVCCPPVTLEQDLHRKMHSWMLHTLAFAVTSLVLSCAETIDYYGEICDNACPCEEKDGILTVS
CENRGIISLSEISPPRFPIYHLLLSGNLLNRLYPNEFVNYTGASILHLGSNVIQDIETGAFHGL
RGLRRLHLNNNKLELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHMLQVLILNDNLLSGL
PNNLFRFVPLTHLDLRGNRLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYS
ALVGDVVCETPFRLHGRDLDEVSKQELCPRKLISDYEMRPQTPLSTTGYLHTTPASVNSVATSS
SAVYKPPLKPPKGTRQPNKPRVRPTSRQPSKDLGYSNYGPSIAYQTKSPVPLECPTACTCNLQI
SDLGLNVNCQERKIESIAELQPKPYNPKKMYLTENYITVVRRTDFLEATGLDLLHLGNNRISMI
QDRAFGDLGNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQYNLIREIQSGTFDPVPNLQLLFL
NNNQLQAMPSGVFSGLTLLRLNLRSNSFTSLPVSGVLDQLTSLIQIDLHDNPWDCTCEVVGMKL
WIEQLKVGVLVDEVICKAPKKFAETYMRSIKSELLCPDYSDVVVSTPTPSSIQLPSRTNAAATP
AVKLNSTGTPAGLGAGTGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQSDHTSTN
NSDVSSFNMQYSVYGGGGGGGGGHPHAHVHHRGSALPKVKTPAGHVYEYIPHPLGHMCKNPIYR
SREGNSVEDYKDLHELKVTYSSNHHLQQQQPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPA
YSVSTIEPREDLLSPVQDADRFYRGILEPDKHCSTTPAGSSLPEYPKFPCSPAAYTFSPNYDLR
RPHQYLHPGAGESRLREPVLYSPPGAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF

hide sequence

RefSeq Acc Id:

XP_006252508 ⟸ XM_006252446

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHVCCPPVTLEQDLHRKMHSWMLHTLAFAVTSLVLSCAETIDYYGEICDNACPCEEKDGILTVS
CENRGIISLSEISPPRFPIYHLLLSGNLLNRLYPNEFVNYTGASILHLGSNVIQDIETGAFHGL
RGLRRLHLNNNKLELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHMLQVLILNDNLLSGL
PNNLFRFVPLTHLDLRGNRLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYS
ALVGDVVCETPFRLHGRDLDEVSKQELCPRKLISDYEMRPQTPLSTTGYLHTTPASVNSVATSS
SAVYKPPLKPPKGTRQPNKPRVRPTSRQPSKDLGYSNYGPSIAYQTKSPVPLECPTACTCNLQI
SDLGLNVNCQERKIESIAELQPKPYNPKKMYLTENYITVVRRTDFLEATGLDLLHLGNNRISMI
QDRAFGDLGNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQYNLIREIQSGTFDPVPNLQLLFL
NNNQLQAMPSGVFSGLTLLRLNLRSNSFTSLPVSGVLDQLTSLIQIDLHDNPWDCTCEVVGMKL
WIEQLKVGVLVDEVICKAPKKFAETYMRSIKSELLCPDYSDVVVSTPTPSSIQLPSRTNAAATP
AVKLNSTGTPAGLGAGTGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQSDHTSTN
NSDVSSFNMQYSVYGGGGGGGGGHPHAHVHHRGSALPKVKTPAGHVYEYIPHPLGHMCKNPIYR
SREGNSVEDYKDLHELKVTYSSNHHLQQQQPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPA
YSVSTIEPREDLLSPVQDADRFYRGILEPDKHCSTTPAGSSLPEYPKFPCSPAAYTFSPNYDLR
RPHQYLHPGAGESRLREPVLYSPPGAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF

hide sequence

RefSeq Acc Id:

XP_006252509 ⟸ XM_006252447

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHVCCPPVTLEQDLHRKMHSWMLHTLAFAVTSLVLSCAETIDYYGEICDNACPCEEKDGILTVS
CENRGIISLSEISPPRFPIYHLLLSGNLLNRLYPNEFVNYTGASILHLGSNVIQDIETGAFHGL
RGLRRLHLNNNKLELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHMLQVLILNDNLLSGL
PNNLFRFVPLTHLDLRGNRLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYS
ALVGDVVCETPFRLHGRDLDEVSKQELCPRKLISDYEMRPQTPLSTTGYLHTTPASVNSVATSS
SAVYKPPLKPPKGTRQPNKPRVRPTSRQPSKDLGYSNYGPSIAYQTKSPVPLECPTACTCNLQI
SDLGLNVNCQERKIESIAELQPKPYNPKKMYLTENYITVVRRTDFLEATGLDLLHLGNNRISMI
QDRAFGDLGNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQYNLIREIQSGTFDPVPNLQLLFL
NNNQLQAMPSGVFSGLTLLRLNLRSNSFTSLPVSGVLDQLTSLIQIDLHDNPWDCTCEVVGMKL
WIEQLKVGVLVDEVICKAPKKFAETYMRSIKSELLCPDYSDVVVSTPTPSSIQLPSRTNAAATP
AVKLNSTGTPAGLGAGTGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQSDHTSTN
NSDVSSFNMQYSVYGGGGGGGGGHPHAHVHHRGSALPKVKTPAGHVYEYIPHPLGHMCKNPIYR
SREGNSVEDYKDLHELKVTYSSNHHLQQQQPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPA
YSVSTIEPREDLLSPVQDADRFYRGILEPDKHCSTTPAGSSLPEYPKFPCSPAAYTFSPNYDLR
RPHQYLHPGAGESRLREPVLYSPPGAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF

hide sequence

Ensembl Acc Id:

ENSRNOP00000066274 ⟸ ENSRNOT00000012785

RefSeq Acc Id:	XP_063130413 ⟸ XM_063274343
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000104303 ⟸ ENSRNOT00000137337

Ensembl Acc Id:

ENSRNOP00000104477 ⟸ ENSRNOT00000174032

Protein Domains

LRRCT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R9U3-F1-model_v2	AlphaFold	M0R9U3	1-958	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310957	AgrOrtholog
BioCyc Gene	G2FUF-12559	BioCyc
Ensembl Genes	ENSRNOG00000009649	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012785	ENTREZGENE
	ENSRNOT00000012785.7	UniProtKB/TrEMBL
	ENSRNOT00000137337	ENTREZGENE
	ENSRNOT00000137337.1	UniProtKB/TrEMBL
	ENSRNOT00000174032	ENTREZGENE
	ENSRNOT00000174032.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
KEGG Report	rno:306152	UniProtKB/TrEMBL
NCBI Gene	306152	ENTREZGENE
PANTHER	PTHR45773	UniProtKB/TrEMBL
	SLIT AND NTRK-LIKE PROTEIN 5	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
PhenoGen	Slitrk5	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009649	RatGTEx
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A6HUD7	ENTREZGENE, UniProtKB/TrEMBL
	M0R9U3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Slitrk5	SLIT and NTRK-like family, member 5	Slitrk5_predicted	SLIT and NTRK-like family, member 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slitrk5_predicted	SLIT and NTRK-like family, member 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD