Ccdc170 (coiled-coil domain containing 170) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ccdc170 (coiled-coil domain containing 170) Rattus norvegicus
Analyze
Symbol: Ccdc170
Name: coiled-coil domain containing 170
RGD ID: 1310945
Description: Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to be located in ciliary basal body. Predicted to be active in Golgi apparatus. Orthologous to human CCDC170 (coiled-coil domain containing 170); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 170; LOC292266; RGD1310945; similar to hypothetical protein FLJ23305
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8143,351,010 - 43,458,192 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl143,345,378 - 43,644,463 (+)EnsemblGRCr8
mRatBN7.2140,945,607 - 41,050,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl140,945,961 - 41,085,040 (+)EnsemblmRatBN7.2
Rnor_6.0142,216,594 - 42,256,837 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0141,033,284 - 41,133,299 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl141,034,308 - 41,126,043 (+)Ensemblrn6Rnor6.0
Rnor_5.0143,531,192 - 43,575,969 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0142,376,460 - 42,468,239 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4135,196,779 - 35,290,683 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera136,635,479 - 36,739,306 (+)NCBICelera
RGSC_v3.1135,179,315 - 35,242,110 (+)NCBI
Cytogenetic Map1q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:28687497  


Genomics

Comparative Map Data
Ccdc170
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8143,351,010 - 43,458,192 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl143,345,378 - 43,644,463 (+)EnsemblGRCr8
mRatBN7.2140,945,607 - 41,050,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl140,945,961 - 41,085,040 (+)EnsemblmRatBN7.2
Rnor_6.0142,216,594 - 42,256,837 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0141,033,284 - 41,133,299 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl141,034,308 - 41,126,043 (+)Ensemblrn6Rnor6.0
Rnor_5.0143,531,192 - 43,575,969 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0142,376,460 - 42,468,239 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4135,196,779 - 35,290,683 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera136,635,479 - 36,739,306 (+)NCBICelera
RGSC_v3.1135,179,315 - 35,242,110 (+)NCBI
Cytogenetic Map1q11NCBI
CCDC170
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386151,494,017 - 151,621,193 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6151,494,013 - 151,621,193 (+)Ensemblhg38GRCh38
GRCh376151,815,152 - 151,942,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366151,856,920 - 151,984,021 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346151,907,340 - 152,034,441NCBI
Celera6152,549,039 - 152,676,191 (+)NCBICelera
Cytogenetic Map6q25.1NCBI
HuRef6149,377,217 - 149,504,491 (+)NCBIHuRef
CHM1_16152,079,306 - 152,206,406 (+)NCBICHM1_1
T2T-CHM13v2.06152,694,662 - 152,822,401 (+)NCBIT2T-CHM13v2.0
Ccdc170
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39104,432,312 - 4,514,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl104,432,502 - 4,512,231 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38104,482,515 - 4,564,498 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl104,482,502 - 4,562,231 (+)Ensemblmm10GRCm38
MGSCv37105,785,430 - 5,836,669 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36105,785,430 - 5,836,669 (-)NCBIMGSCv36mm8
Celera104,444,562 - 4,502,781 (+)NCBICelera
Cytogenetic Map10A1NCBI
cM Map102.06NCBI
Ccdc170
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543910,008,654 - 10,079,069 (-)Ensembl
ChiLan1.0NW_00495543910,010,421 - 10,114,323 (-)NCBIChiLan1.0ChiLan1.0
CCDC170
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25171,516,904 - 171,645,129 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16169,408,888 - 169,536,942 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06149,310,350 - 149,435,830 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16154,007,080 - 154,129,633 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6154,007,045 - 154,129,442 (+)EnsemblpanPan2panpan1.1
CCDC170
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,858,005 - 41,932,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,858,020 - 41,932,260 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha142,677,047 - 42,773,692 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0142,020,758 - 42,117,742 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl142,020,714 - 42,119,544 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1141,894,571 - 41,990,882 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0141,738,163 - 41,834,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0142,245,032 - 42,341,705 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc170
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946137,125,504 - 137,200,878 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364894,377,755 - 4,451,752 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364894,387,662 - 4,451,789 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC170
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,657,359 - 14,751,051 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1114,649,453 - 14,751,051 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,909,506 - 17,163,676 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC170
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11378,954,615 - 79,085,616 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1378,954,547 - 79,087,864 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604051,286,137 - 51,417,071 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc170
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247856,658,352 - 6,728,377 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247856,659,375 - 6,742,757 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc170
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12199,234,737 - 199,337,668 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc170
747 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:30
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000035962
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat

Markers in Region
D1Got304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2140,951,497 - 40,951,644 (+)MAPPERmRatBN7.2
Rnor_6.0141,039,744 - 41,039,888NCBIRnor6.0
Rnor_5.0142,381,943 - 42,382,087UniSTSRnor5.0
RGSC_v3.4135,202,678 - 35,202,822UniSTSRGSC3.4
Celera136,641,943 - 36,642,087UniSTS
Cytogenetic Map1p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 10 49 147 46 45 14 39 14 6 225 119 11 125 69 92 31 8 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001065531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_214760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000035962   ⟹   ENSRNOP00000036286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,351,414 - 43,445,885 (+)Ensembl
mRatBN7.2 Ensembl140,945,961 - 41,051,013 (+)Ensembl
Rnor_6.0 Ensembl141,065,716 - 41,125,835 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093108   ⟹   ENSRNOP00000076025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,351,314 - 43,455,134 (+)Ensembl
mRatBN7.2 Ensembl140,946,060 - 41,085,040 (+)Ensembl
Rnor_6.0 Ensembl141,034,308 - 41,126,043 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122709   ⟹   ENSRNOP00000099905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,351,432 - 43,445,885 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129873   ⟹   ENSRNOP00000105469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,346,147 - 43,469,930 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151143   ⟹   ENSRNOP00000103306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,351,411 - 43,454,396 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163780   ⟹   ENSRNOP00000110205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,351,565 - 43,445,885 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163895   ⟹   ENSRNOP00000104348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,345,378 - 43,445,885 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168348   ⟹   ENSRNOP00000106411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,351,414 - 43,644,463 (+)Ensembl
RefSeq Acc Id: XM_008758712   ⟹   XP_008756934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,351,304 - 43,458,192 (+)NCBI
mRatBN7.2140,945,611 - 41,050,010 (+)NCBI
Rnor_6.0141,033,286 - 41,133,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589887   ⟹   XP_017445376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,351,010 - 43,446,431 (+)NCBI
mRatBN7.2140,945,607 - 41,041,066 (+)NCBI
Rnor_6.0141,033,284 - 41,126,116 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589888   ⟹   XP_017445377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,351,301 - 43,446,431 (+)NCBI
mRatBN7.2140,945,609 - 41,041,066 (+)NCBI
Rnor_6.0141,033,285 - 41,126,116 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099604   ⟹   XP_038955532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,351,308 - 43,446,431 (+)NCBI
mRatBN7.2140,945,613 - 41,041,066 (+)NCBI
RefSeq Acc Id: XM_039099607   ⟹   XP_038955535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,351,314 - 43,446,431 (+)NCBI
mRatBN7.2140,946,056 - 41,041,066 (+)NCBI
RefSeq Acc Id: XM_214760   ⟹   XP_214760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,351,307 - 43,446,431 (+)NCBI
mRatBN7.2140,945,613 - 41,041,066 (+)NCBI
Rnor_6.0141,033,286 - 41,126,116 (+)NCBI
Rnor_5.0142,376,460 - 42,468,239 (+)NCBI
RGSC_v3.4135,196,779 - 35,290,683 (+)RGD
Sequence:
RefSeq Acc Id: XP_214760   ⟸   XM_214760
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008756934   ⟸   XM_008758712
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GWU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445376   ⟸   XM_017589887
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017445377   ⟸   XM_017589888
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000036286   ⟸   ENSRNOT00000035962
Ensembl Acc Id: ENSRNOP00000076025   ⟸   ENSRNOT00000093108
RefSeq Acc Id: XP_038955532   ⟸   XM_039099604
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955535   ⟸   XM_039099607
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000104348   ⟸   ENSRNOT00000163895
Ensembl Acc Id: ENSRNOP00000099905   ⟸   ENSRNOT00000122709
Ensembl Acc Id: ENSRNOP00000106411   ⟸   ENSRNOT00000168348
Ensembl Acc Id: ENSRNOP00000105469   ⟸   ENSRNOT00000129873
Ensembl Acc Id: ENSRNOP00000103306   ⟸   ENSRNOT00000151143
Ensembl Acc Id: ENSRNOP00000110205   ⟸   ENSRNOT00000163780

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GWU6-F1-model_v2 AlphaFold A0A1B0GWU6 1-718 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689593
Promoter ID:EPDNEW_R113
Type:single initiation site
Name:Ccdc170_1
Description:coiled-coil domain containing 170
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0141,034,364 - 41,034,424EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310945 AgrOrtholog
BioCyc Gene G2FUF-61715 BioCyc
Ensembl Genes ENSRNOG00000024280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035962.7 UniProtKB/TrEMBL
  ENSRNOT00000093108 ENTREZGENE
  ENSRNOT00000093108.3 UniProtKB/TrEMBL
  ENSRNOT00000122709 ENTREZGENE
  ENSRNOT00000122709.1 UniProtKB/TrEMBL
  ENSRNOT00000129873.1 UniProtKB/TrEMBL
  ENSRNOT00000151143.1 UniProtKB/TrEMBL
  ENSRNOT00000163780.1 UniProtKB/TrEMBL
  ENSRNOT00000163895 ENTREZGENE
  ENSRNOT00000163895.1 UniProtKB/TrEMBL
  ENSRNOT00000168348.1 UniProtKB/TrEMBL
InterPro CCDC170-like UniProtKB/TrEMBL
KEGG Report rno:292266 UniProtKB/TrEMBL
NCBI Gene 292266 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 170 UniProtKB/TrEMBL
  PTHR18863 UniProtKB/TrEMBL
PhenoGen Ccdc170 PhenoGen
RatGTEx ENSRNOG00000024280 RatGTEx
UniProt A0A1B0GWU6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L690_RAT UniProtKB/TrEMBL
  A0ABK0L792_RAT UniProtKB/TrEMBL
  A0ABK0LG32_RAT UniProtKB/TrEMBL
  A0ABK0LH78_RAT UniProtKB/TrEMBL
  A0ABK0LHN4_RAT UniProtKB/TrEMBL
  A0ABK0LKX7_RAT UniProtKB/TrEMBL
  F1LT05 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Ccdc170  coiled-coil domain containing 170  RGD1310945  similar to hypothetical protein FLJ23305  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310945  similar to hypothetical protein FLJ23305   RGD1310945_predicted  similar to hypothetical protein FLJ23305 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310945_predicted  similar to hypothetical protein FLJ23305 (predicted)  LOC292266_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC292266_predicted  similar to hypothetical protein FLJ23305 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL