Spsb3 (splA/ryanodine receptor domain and SOCS box containing 3) - Rat Genome Database

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Gene: Spsb3 (splA/ryanodine receptor domain and SOCS box containing 3) Rattus norvegicus
Analyze
Symbol: Spsb3
Name: splA/ryanodine receptor domain and SOCS box containing 3
RGD ID: 1310936
Description: Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including negative regulation of cGAS/STING signaling pathway; negative regulation of epithelial to mesenchymal transition; and protein K48-linked ubiquitination. Predicted to act upstream of or within cGAS/STING signaling pathway and epithelial to mesenchymal transition. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human SPSB3 (splA/ryanodine receptor domain and SOCS box containing 3); INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC302981; SPRY domain-containing SOCS box protein 3; T-complex expressed gene 1; Tce1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,411,692 - 14,417,357 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,408,136 - 14,421,771 (+)EnsemblGRCr8
mRatBN7.21013,907,175 - 13,912,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,907,253 - 13,912,841 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1018,654,799 - 18,659,932 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,143,659 - 18,148,792 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,642,876 - 13,648,009 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,248,199 - 14,253,815 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,248,399 - 14,253,815 (+)Ensemblrn6Rnor6.0
Rnor_5.01014,064,726 - 14,069,831 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41014,135,818 - 14,140,923 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,586,941 - 13,592,046 (+)NCBICelera
RGSC_v3.11014,136,129 - 14,140,924 (+)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Spsb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,411,692 - 14,417,357 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,408,136 - 14,421,771 (+)EnsemblGRCr8
mRatBN7.21013,907,175 - 13,912,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,907,253 - 13,912,841 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1018,654,799 - 18,659,932 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,143,659 - 18,148,792 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,642,876 - 13,648,009 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,248,199 - 14,253,815 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,248,399 - 14,253,815 (+)Ensemblrn6Rnor6.0
Rnor_5.01014,064,726 - 14,069,831 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41014,135,818 - 14,140,923 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,586,941 - 13,592,046 (+)NCBICelera
RGSC_v3.11014,136,129 - 14,140,924 (+)NCBI
Cytogenetic Map10q12NCBI
SPSB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,776,712 - 1,782,571 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,776,710 - 1,793,700 (-)Ensemblhg38GRCh38
GRCh37161,826,713 - 1,832,572 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,766,714 - 1,772,582 (-)NCBIBuild 36Build 36hg18NCBI36
Celera162,038,990 - 2,044,859 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,749,609 - 1,755,478 (-)NCBIHuRef
CHM1_1161,826,661 - 1,832,529 (-)NCBICHM1_1
T2T-CHM13v2.0161,792,547 - 1,798,407 (-)NCBIT2T-CHM13v2.0
Spsb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,104,956 - 25,111,124 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,105,617 - 25,111,126 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381724,885,982 - 24,892,150 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,886,643 - 24,892,152 (+)Ensemblmm10GRCm38
MGSCv371725,023,619 - 25,029,092 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361724,615,081 - 24,619,747 (+)NCBIMGSCv36mm8
Celera1725,413,484 - 25,418,837 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Spsb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,487,475 - 15,493,422 (+)Ensembl
ChiLan1.0NW_00495544215,486,845 - 15,493,422 (+)NCBIChiLan1.0ChiLan1.0
SPSB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,043,351 - 2,048,145 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,824,795 - 5,830,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016399,090 - 405,020 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,830,040 - 1,835,499 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,830,040 - 1,835,504 (-)EnsemblpanPan2panpan1.1
SPSB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,122,148 - 39,127,444 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,122,247 - 39,127,446 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha640,361,044 - 40,366,240 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0639,438,582 - 39,443,761 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,438,588 - 39,443,757 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,115,275 - 39,120,468 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,087,856 - 39,093,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,566,315 - 39,571,495 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Spsb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,492,050 - 104,497,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,212,299 - 2,217,140 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,212,022 - 2,217,409 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPSB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,185,014 - 40,190,518 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1340,184,534 - 40,190,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,622,709 - 41,626,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPSB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,685,741 - 1,691,542 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,686,095 - 1,691,489 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606829,394,945 - 29,400,809 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spsb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913470,002 - 475,765 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624913469,732 - 475,767 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Spsb3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v192,167,157 - 2,172,687 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Spsb3
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000020733
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH134784  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,909,292 - 13,909,491 (+)MAPPERmRatBN7.2
Rnor_6.01014,250,270 - 14,250,468NCBIRnor6.0
Rnor_5.01014,066,286 - 14,066,484UniSTSRnor5.0
RGSC_v3.41014,137,378 - 14,137,576UniSTSRGSC3.4
Celera1013,588,501 - 13,588,699UniSTS
Cytogenetic Map10q12UniSTS
RH138928  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,911,961 - 13,912,121 (+)MAPPERmRatBN7.2
Rnor_6.01014,252,939 - 14,253,098NCBIRnor6.0
Rnor_5.01014,068,955 - 14,069,114UniSTSRnor5.0
RGSC_v3.41014,140,047 - 14,140,206UniSTSRGSC3.4
Celera1013,591,170 - 13,591,329UniSTS
RH 3.4 Map10172.3UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020733   ⟹   ENSRNOP00000020733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,411,839 - 14,417,358 (+)Ensembl
mRatBN7.2 Ensembl1013,907,253 - 13,912,841 (+)Ensembl
Rnor_6.0 Ensembl1014,248,710 - 14,253,815 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000021075   ⟹   ENSRNOP00000021075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,411,766 - 14,421,771 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077689   ⟹   ENSRNOP00000071059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,411,829 - 14,417,355 (+)Ensembl
mRatBN7.2 Ensembl1013,907,461 - 13,912,841 (+)Ensembl
Rnor_6.0 Ensembl1014,248,399 - 14,253,563 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000131934   ⟹   ENSRNOP00000112142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,408,136 - 14,417,358 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169788   ⟹   ENSRNOP00000106305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,409,111 - 14,417,358 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173598   ⟹   ENSRNOP00000101037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,410,908 - 14,417,356 (+)Ensembl
RefSeq Acc Id: NM_001106988   ⟹   NP_001100458
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,412,252 - 14,417,357 (+)NCBI
mRatBN7.21013,907,733 - 13,912,838 (+)NCBI
Rnor_6.01014,248,710 - 14,253,815 (+)NCBI
Rnor_5.01014,064,726 - 14,069,831 (+)NCBI
RGSC_v3.41014,135,818 - 14,140,923 (+)RGD
Celera1013,586,941 - 13,592,046 (+)RGD
Sequence:
RefSeq Acc Id: XM_017597221   ⟹   XP_017452710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,692 - 14,417,357 (+)NCBI
mRatBN7.21013,907,175 - 13,912,841 (+)NCBI
Rnor_6.01014,248,199 - 14,253,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597222   ⟹   XP_017452711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,692 - 14,417,357 (+)NCBI
mRatBN7.21013,907,175 - 13,912,841 (+)NCBI
Rnor_6.01014,248,200 - 14,253,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597223   ⟹   XP_017452712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,692 - 14,417,357 (+)NCBI
mRatBN7.21013,907,175 - 13,912,841 (+)NCBI
Rnor_6.01014,248,200 - 14,253,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597224   ⟹   XP_017452713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,853 - 14,417,357 (+)NCBI
mRatBN7.21013,907,687 - 13,912,841 (+)NCBI
Rnor_6.01014,248,656 - 14,253,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597227   ⟹   XP_017452716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,412,230 - 14,417,357 (+)NCBI
mRatBN7.21013,907,334 - 13,912,841 (+)NCBI
Rnor_6.01014,248,311 - 14,253,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039085867   ⟹   XP_038941795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,709 - 14,417,357 (+)NCBI
mRatBN7.21013,907,192 - 13,912,841 (+)NCBI
RefSeq Acc Id: XM_039085870   ⟹   XP_038941798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,412,257 - 14,417,357 (+)NCBI
mRatBN7.21013,907,690 - 13,912,841 (+)NCBI
RefSeq Acc Id: XM_063268918   ⟹   XP_063124988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,692 - 14,417,357 (+)NCBI
RefSeq Acc Id: XM_063268919   ⟹   XP_063124989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,411,845 - 14,417,357 (+)NCBI
RefSeq Acc Id: XM_063268920   ⟹   XP_063124990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,415,626 - 14,417,357 (+)NCBI
RefSeq Acc Id: NP_001100458   ⟸   NM_001106988
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452710   ⟸   XM_017597221
- Peptide Label: isoform X1
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452711   ⟸   XM_017597222
- Peptide Label: isoform X6
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452712   ⟸   XM_017597223
- Peptide Label: isoform X7
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452716   ⟸   XM_017597227
- Peptide Label: isoform X5
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452713   ⟸   XM_017597224
- Peptide Label: isoform X2
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071059   ⟸   ENSRNOT00000077689
Ensembl Acc Id: ENSRNOP00000020733   ⟸   ENSRNOT00000020733
RefSeq Acc Id: XP_038941795   ⟸   XM_039085867
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941798   ⟸   XM_039085870
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124988   ⟸   XM_063268918
- Peptide Label: isoform X3
- UniProtKB: A6HCY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124989   ⟸   XM_063268919
- Peptide Label: isoform X8
- UniProtKB: D3ZVU8 (UniProtKB/TrEMBL),   A6HCY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124990   ⟸   XM_063268920
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000021075   ⟸   ENSRNOT00000021075
Ensembl Acc Id: ENSRNOP00000101037   ⟸   ENSRNOT00000173598
Ensembl Acc Id: ENSRNOP00000106305   ⟸   ENSRNOT00000169788
Ensembl Acc Id: ENSRNOP00000112142   ⟸   ENSRNOT00000131934
Protein Domains
B30.2/SPRY   SOCS box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVU8-F1-model_v2 AlphaFold D3ZVU8 1-391 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310936 AgrOrtholog
BioCyc Gene G2FUF-25816 BioCyc
Ensembl Genes ENSRNOG00000015300 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020733 ENTREZGENE
  ENSRNOT00000020733.7 UniProtKB/TrEMBL
  ENSRNOT00000077689 ENTREZGENE
  ENSRNOT00000077689.3 UniProtKB/TrEMBL
  ENSRNOT00000131934 ENTREZGENE
  ENSRNOT00000131934.1 UniProtKB/TrEMBL
  ENSRNOT00000169788.1 UniProtKB/TrEMBL
  ENSRNOT00000173598 ENTREZGENE
  ENSRNOT00000173598.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
InterPro B30.2/SPRY_sf UniProtKB/TrEMBL
  B302 UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  FBXO45-Fsn/SPSB_families UniProtKB/TrEMBL
  SOCS_C UniProtKB/TrEMBL
  SPRY_rcpt UniProtKB/TrEMBL
  SPRY_SPSB3 UniProtKB/TrEMBL
KEGG Report rno:302981 UniProtKB/TrEMBL
NCBI Gene 302981 ENTREZGENE
PANTHER SPRY DOMAIN CONTAINING SOCS BOX PROTEIN UniProtKB/TrEMBL
  SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 3 UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
PhenoGen Spsb3 PhenoGen
PROSITE B302_SPRY UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015300 RatGTEx
SMART SPRY UniProtKB/TrEMBL
Superfamily-SCOP ConA_like_lec_gl UniProtKB/TrEMBL
UniProt A0A0G2JZI4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L838_RAT UniProtKB/TrEMBL
  A0ABK0LAI2_RAT UniProtKB/TrEMBL
  A0ABK0M844_RAT UniProtKB/TrEMBL
  A6HCY2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVU8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Spsb3  splA/ryanodine receptor domain and SOCS box containing 3   Spsb3_predicted  splA/ryanodine receptor domain and SOCS box containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Spsb3_predicted  splA/ryanodine receptor domain and SOCS box containing 3 (predicted)  Tce1_predicted  T-complex expressed gene 1 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Tce1_predicted  T-complex expressed gene 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED