Aggf1 (angiogenic factor with G patch and FHA domains 1) - Rat Genome Database

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Gene: Aggf1 (angiogenic factor with G patch and FHA domains 1) Rattus norvegicus
Analyze
Symbol: Aggf1
Name: angiogenic factor with G patch and FHA domains 1
RGD ID: 1310888
Description: Predicted to enable identical protein binding activity. Predicted to be involved in cell adhesion; positive regulation of angiogenesis; and positive regulation of endothelial cell proliferation. Predicted to be located in extracellular region and perinuclear region of cytoplasm. Orthologous to human AGGF1 (angiogenic factor with G-patch and FHA domains 1); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC310005; RGD1310888; similar to RIKEN cDNA 2010009L17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,354,073 - 28,380,794 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl228,354,073 - 28,380,759 (-)EnsemblGRCr8
mRatBN7.2226,619,336 - 26,646,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,619,339 - 26,645,952 (-)EnsemblmRatBN7.2
Rnor_6.0225,068,804 - 25,095,429 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,069,620 - 25,095,106 (-)Ensemblrn6Rnor6.0
Rnor_5.0244,227,286 - 44,253,899 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4225,723,668 - 25,749,359 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera222,684,509 - 22,711,225 (-)NCBICelera
RGSC_v3.1225,644,037 - 25,679,865 (-)NCBI
Cytogenetic Map2q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
syndactyly  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:14961121   PMID:26850475   PMID:28153879  


Genomics

Comparative Map Data
Aggf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,354,073 - 28,380,794 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl228,354,073 - 28,380,759 (-)EnsemblGRCr8
mRatBN7.2226,619,336 - 26,646,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,619,339 - 26,645,952 (-)EnsemblmRatBN7.2
Rnor_6.0225,068,804 - 25,095,429 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,069,620 - 25,095,106 (-)Ensemblrn6Rnor6.0
Rnor_5.0244,227,286 - 44,253,899 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4225,723,668 - 25,749,359 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera222,684,509 - 22,711,225 (-)NCBICelera
RGSC_v3.1225,644,037 - 25,679,865 (-)NCBI
Cytogenetic Map2q12NCBI
AGGF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38577,030,404 - 77,065,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl577,029,251 - 77,065,234 (+)Ensemblhg38GRCh38
GRCh37576,326,229 - 76,361,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,361,988 - 76,396,794 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34576,361,987 - 76,396,791NCBI
Celera572,220,718 - 72,255,361 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,532,859 - 71,567,837 (+)NCBIHuRef
CHM1_1575,759,108 - 75,794,521 (+)NCBICHM1_1
T2T-CHM13v2.0577,512,128 - 77,546,904 (+)NCBIT2T-CHM13v2.0
Aggf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,487,191 - 95,511,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,487,191 - 95,511,860 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381395,350,683 - 95,375,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,350,683 - 95,375,352 (-)Ensemblmm10GRCm38
MGSCv371396,120,671 - 96,145,289 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361396,451,415 - 96,476,033 (-)NCBIMGSCv36mm8
Celera1398,972,068 - 98,996,687 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.41NCBI
Aggf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542523,847,673 - 23,874,404 (-)Ensembl
ChiLan1.0NW_00495542523,847,502 - 23,873,964 (-)NCBIChiLan1.0ChiLan1.0
AGGF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,232,858 - 38,265,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,386,503 - 36,418,418 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,236,209 - 38,268,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,762,317 - 38,794,606 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,762,317 - 38,794,594 (-)EnsemblpanPan2panpan1.1
AGGF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,578,050 - 29,682,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl329,647,592 - 29,682,776 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha330,804,004 - 30,921,635 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0329,486,014 - 29,601,272 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl329,566,220 - 29,601,792 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1329,420,293 - 29,538,033 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,400,940 - 29,518,896 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,770,262 - 29,888,021 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Aggf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213185,749,025 - 185,789,458 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365495,068,656 - 5,111,406 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365495,069,164 - 5,109,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGGF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,890,481 - 85,934,358 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1285,890,423 - 85,941,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,506,911 - 87,552,643 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGGF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1471,277,293 - 71,309,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl471,277,315 - 71,310,159 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604920,115,923 - 20,148,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aggf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,538,833 - 1,580,471 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248691,538,603 - 1,577,119 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Aggf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13200,953,012 - 200,979,296 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Aggf1
276 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:73
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000051653
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat

Markers in Region
RH131861  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,619,459 - 26,619,671 (+)MAPPERmRatBN7.2
Rnor_6.0225,068,928 - 25,069,139NCBIRnor6.0
Rnor_5.0244,227,410 - 44,227,621UniSTSRnor5.0
RGSC_v3.4225,723,006 - 25,723,217UniSTSRGSC3.4
Celera222,684,633 - 22,684,844UniSTS
RH 3.4 Map213.3UniSTS
Cytogenetic Map2q12UniSTS
BE119372  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,644,919 - 26,645,087 (+)MAPPERmRatBN7.2
Rnor_6.0225,094,294 - 25,094,461NCBIRnor6.0
Rnor_5.0244,252,776 - 44,252,943UniSTSRnor5.0
RGSC_v3.4225,748,332 - 25,748,499UniSTSRGSC3.4
Celera222,710,091 - 22,710,258UniSTS
RH 3.4 Map213.3UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000051653   ⟹   ENSRNOP00000047981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl225,069,620 - 25,095,106 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085857   ⟹   ENSRNOP00000072154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl228,354,073 - 28,380,759 (-)Ensembl
mRatBN7.2 Ensembl226,619,339 - 26,645,952 (-)Ensembl
Rnor_6.0 Ensembl225,072,877 - 25,095,106 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149099   ⟹   ENSRNOP00000100571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl228,354,073 - 28,380,264 (-)Ensembl
RefSeq Acc Id: NM_001427779   ⟹   NP_001414708
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8228,354,073 - 28,380,759 (-)NCBI
RefSeq Acc Id: XM_063281715   ⟹   XP_063137785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8228,360,692 - 28,380,794 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414708 (Get FASTA)   NCBI Sequence Viewer  
  XP_063137785 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99754 (Get FASTA)   NCBI Sequence Viewer  
  EDM10097 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072154
  ENSRNOP00000072154.2
  ENSRNOP00000100571.1
Ensembl Acc Id: ENSRNOP00000047981   ⟸   ENSRNOT00000051653
Ensembl Acc Id: ENSRNOP00000072154   ⟸   ENSRNOT00000085857
RefSeq Acc Id: NP_001414708   ⟸   NM_001427779
- UniProtKB: A0A0G2K295 (UniProtKB/TrEMBL),   A6I4Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137785   ⟸   XM_063281715
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000100571   ⟸   ENSRNOT00000149099
Protein Domains
FHA   G-patch   OCRE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAK0-F1-model_v2 AlphaFold F1MAK0 1-704 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310888 AgrOrtholog
BioCyc Gene G2FUF-54810 BioCyc
Ensembl Genes ENSRNOG00000029304 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085857 ENTREZGENE
  ENSRNOT00000085857.3 UniProtKB/TrEMBL
  ENSRNOT00000149099.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5623942 IMAGE-MGC_LOAD
InterPro AGGF1 UniProtKB/TrEMBL
  AGGF1_OCRE UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  G_patch_dom UniProtKB/TrEMBL
  OCRE UniProtKB/TrEMBL
  SMAD_FHA_domain UniProtKB/TrEMBL
MGC_CLONE MGC:124664 IMAGE-MGC_LOAD
NCBI Gene 310005 ENTREZGENE
PANTHER ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 UniProtKB/TrEMBL
  ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  G-patch UniProtKB/TrEMBL
  OCRE UniProtKB/TrEMBL
PhenoGen Aggf1 PhenoGen
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  G_PATCH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029304 RatGTEx
SMART FHA UniProtKB/TrEMBL
  G_patch UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A0G2K295 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KZG6_RAT UniProtKB/TrEMBL
  A6I4Y9 ENTREZGENE, UniProtKB/TrEMBL
  Q499U9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Aggf1  angiogenic factor with G patch and FHA domains 1  RGD1310888  similar to RIKEN cDNA 2010009L17  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310888  similar to RIKEN cDNA 2010009L17  RGD1310888_predicted  similar to RIKEN cDNA 2010009L17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310888_predicted  similar to RIKEN cDNA 2010009L17 (predicted)  LOC310005_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310005_predicted  similar to RIKEN cDNA 2010009L17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL