Advanced Search (OLGA)

Gene: Pitpnm2 (phosphatidylinositol transfer protein, membrane-associated 2) Rattus norvegicus

Analyze

Symbol:

Pitpnm2

Name:

phosphatidylinositol transfer protein, membrane-associated 2

RGD ID:

1310867

Description:

Predicted to enable several functions, including phospholipid binding activity; phospholipid transporter activity; and receptor tyrosine kinase binding activity. Predicted to be involved in intermembrane lipid transfer and phospholipid transport. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm. Orthologous to human PITPNM2 (phosphatidylinositol transfer protein membrane associated 2); INTERACTS WITH amphetamine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC102552626; LOC304474; membrane-associated phosphatidylinositol transfer protein 2; MGC189186; uncharacterized LOC102552626

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,008,399 - 38,140,046 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	38,066,006 - 38,140,046 (+)	Ensembl				GRCr8
mRatBN7.2	12	32,347,455 - 32,479,103 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,380,805 - 32,479,102 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	33,560,961 - 33,659,258 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,172,303 - 34,270,602 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,224,193 - 33,322,500 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,805,332 - 37,903,856 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,805,332 - 37,903,855 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	39,678,053 - 39,776,218 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	33,496,702 - 33,603,240 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	34,068,364 - 34,167,361 (+)	NCBI		Celera
RGSC_v3.1	12	33,420,916 - 33,464,077 (+)	NCBI
Cytogenetic Map	12	q15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cannabidiol (ISO)

CGP 52608 (ISO)

chlormequat chloride (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

FR900359 (ISO)

glyphosate (EXP)

lead(0) (ISO)

methotrexate (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intermembrane lipid transfer (IEA)

phospholipid transport (IEA)

Cellular Component

cell body (IDA)

cytoplasm (IBA)

endomembrane system (IEA)

Molecular Function

calcium ion binding (IEA,ISO)

metal ion binding (IEA)

phosphatidylcholine binding (IBA)

phosphatidylcholine transporter activity (IBA)

phosphatidylinositol binding (IBA)

phosphatidylinositol transfer activity (IBA,IEA,ISO)

phospholipid transporter activity (IEA)

protein binding (ISO)

receptor tyrosine kinase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Identification of a novel family of targets of PYK2 related to Drosophila retinal degeneration B (rdgB) protein.	Lev S, etal., Mol Cell Biol. 1999 Mar;19(3):2278-88.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10460238	PMID:12477932

Genomics

Comparative Map Data

Pitpnm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,008,399 - 38,140,046 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	38,066,006 - 38,140,046 (+)	Ensembl				GRCr8
mRatBN7.2	12	32,347,455 - 32,479,103 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,380,805 - 32,479,102 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	33,560,961 - 33,659,258 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,172,303 - 34,270,602 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,224,193 - 33,322,500 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,805,332 - 37,903,856 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,805,332 - 37,903,855 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	39,678,053 - 39,776,218 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	33,496,702 - 33,603,240 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	34,068,364 - 34,167,361 (+)	NCBI		Celera
RGSC_v3.1	12	33,420,916 - 33,464,077 (+)	NCBI
Cytogenetic Map	12	q15	NCBI

PITPNM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	122,983,480 - 123,151,848 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	122,983,480 - 123,151,142 (-)	Ensembl			hg38	GRCh38
GRCh37	12	123,468,027 - 123,635,637 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	122,033,980 - 122,160,928 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	121,994,581 - 122,044,081	NCBI
Celera	12	123,060,820 - 123,187,881 (-)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	120,429,167 - 120,555,564 (-)	NCBI		HuRef
CHM1_1	12	123,436,345 - 123,563,265 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	122,980,005 - 123,147,639 (-)	NCBI		T2T-CHM13v2.0

Pitpnm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,256,753 - 124,387,973 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,256,753 - 124,387,823 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	124,118,689 - 124,249,910 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	124,118,690 - 124,249,760 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	124,568,699 - 124,666,427 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	124,379,309 - 124,477,036 (-)	NCBI		MGSCv36	mm8
Celera	5	121,195,005 - 121,291,421 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	63.39	NCBI

Pitpnm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,735,485 - 5,805,609 (+)	Ensembl
ChiLan1.0	NW_004955482	5,670,827 - 5,804,037 (+)	NCBI	ChiLan1.0	ChiLan1.0

PITPNM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	131,079,387 - 131,243,964 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	131,075,763 - 131,240,336 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	120,589,975 - 120,754,307 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	124,824,658 - 124,948,167 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	124,827,170 - 124,872,625 (-)	Ensembl			panPan2	panpan1.1

PITPNM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	6,413,819 - 6,522,290 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	6,487,777 - 6,521,544 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,543,803 - 6,683,910 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,631,720 - 6,772,296 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,695,319 - 6,772,296 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,564,870 - 6,705,165 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,656,394 - 6,796,617 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,610,311 - 6,750,650 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pitpnm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	157,809,715 - 157,937,556 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,571,865 - 1,669,746 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,571,864 - 1,669,711 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PITPNM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,800,281 - 29,885,475 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	29,730,100 - 29,885,477 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	31,418,298 - 31,574,022 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PITPNM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	118,323,798 - 118,493,994 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	118,324,978 - 118,375,696 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	126,818,630 - 126,989,066 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pitpnm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	22,983,237 - 23,053,913 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	22,983,236 - 23,120,085 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pitpnm2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	29,615,061 - 29,746,605 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pitpnm2
1162 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	728
Count of miRNA genes:	280
Interacting mature miRNAs:	356
Transcripts:	ENSRNOT00000048528
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

RH131340

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	32,478,890 - 32,479,101 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,903,644 - 37,903,854	NCBI	Rnor6.0
Rnor_5.0	12	39,776,007 - 39,776,217	UniSTS	Rnor5.0
RGSC_v3.4	12	33,603,029 - 33,603,239	UniSTS	RGSC3.4
Celera	12	34,167,150 - 34,167,360	UniSTS
RH 3.4 Map	12	571.9	UniSTS
Cytogenetic Map	12	q15	UniSTS

RH144632

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	32,426,720 - 32,426,877 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,851,374 - 37,851,530	NCBI	Rnor6.0
Rnor_5.0	12	39,724,095 - 39,724,251	UniSTS	Rnor5.0
RGSC_v3.4	12	33,550,382 - 33,550,538	UniSTS	RGSC3.4
Celera	12	34,114,897 - 34,115,053	UniSTS
RH 3.4 Map	12	572.0	UniSTS
Cytogenetic Map	12	q15	UniSTS

BF392370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	32,438,512 - 32,438,682 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,863,164 - 37,863,333	NCBI	Rnor6.0
Rnor_5.0	12	39,735,885 - 39,736,054	UniSTS	Rnor5.0
RGSC_v3.4	12	33,562,173 - 33,562,342	UniSTS	RGSC3.4
Celera	12	34,126,677 - 34,126,846	UniSTS
RH 3.4 Map	12	572.9	UniSTS
Cytogenetic Map	12	q15	UniSTS

BE102291

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	32,452,797 - 32,452,949 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,877,553 - 37,877,704	NCBI	Rnor6.0
Rnor_5.0	12	39,749,916 - 39,750,067	UniSTS	Rnor5.0
RGSC_v3.4	12	33,576,937 - 33,577,088	UniSTS	RGSC3.4
Celera	12	34,141,063 - 34,141,214	UniSTS
RH 3.4 Map	12	574.2	UniSTS
Cytogenetic Map	12	q15	UniSTS

AW530578

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	32,466,214 - 32,466,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,890,970 - 37,891,135	NCBI	Rnor6.0
Rnor_5.0	12	39,763,333 - 39,763,498	UniSTS	Rnor5.0
RGSC_v3.4	12	33,590,354 - 33,590,519	UniSTS	RGSC3.4
Celera	12	34,154,480 - 34,154,645	UniSTS
RH 3.4 Map	12	570.7	UniSTS
Cytogenetic Map	12	q15	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048528 ⟹ ENSRNOP00000041143

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,068,526 - 38,140,046 (+)	Ensembl
mRatBN7.2 Ensembl	12	32,380,805 - 32,479,102 (+)	Ensembl
Rnor_6.0 Ensembl	12	37,805,332 - 37,903,855 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084587 ⟹ ENSRNOP00000070314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,066,006 - 38,125,632 (+)	Ensembl
mRatBN7.2 Ensembl	12	32,405,056 - 32,464,685 (+)	Ensembl
Rnor_6.0 Ensembl	12	37,829,579 - 37,889,440 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091084 ⟹ ENSRNOP00000069743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,068,526 - 38,140,046 (+)	Ensembl
mRatBN7.2 Ensembl	12	32,380,805 - 32,479,102 (+)	Ensembl
Rnor_6.0 Ensembl	12	37,878,653 - 37,901,502 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110818 ⟹ ENSRNOP00000095932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,068,526 - 38,140,046 (+)	Ensembl
mRatBN7.2 Ensembl	12	32,380,805 - 32,479,102 (+)	Ensembl

RefSeq Acc Id:

NM_001107139 ⟹ NP_001100609

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,041,754 - 38,140,045 (+)	NCBI
mRatBN7.2	12	32,380,805 - 32,479,102 (+)	NCBI
Rnor_6.0	12	37,805,332 - 37,903,855 (+)	NCBI
Rnor_5.0	12	39,678,053 - 39,776,218 (+)	NCBI
RGSC_v3.4	12	33,496,702 - 33,603,240 (+)	RGD
Celera	12	34,068,364 - 34,167,361 (+)	RGD

Sequence:

show sequence

GGATGCTGGCACGTGTGTCTTGGTCCCTGACTCCCTTCTGTGGACATACTGATCATTCCTCCTC
CTGTGGTGGAGACGTTGACAGAGCTGCTCAGATCTAAGGGTCTTCAGTGAATTCTGTCATGGTT
ATTTAAGGAATCTTGCCTAGAAAGTCCCCACAAGCACGAAGTCCCCTGCCGCCCAGAAGGCGTG
GACTCCAAGATGATCATAAAGGAATACCGGATTCCCCTGCCAATGACTGTGGAGGAATACCGCA
TCGCCCAGCTGTACATGATACAGAAGAAGAGCCGGAACGAGACCTATGGACAAGGCAGCGGAGT
GGAGATCCTGGAGAACCGACCCTACACAGATGGTCCTGGGGGCTCCGGGCAGTACACCCACAAG
GTGTATCATGTGGGCATGCACATTCCTGGCTGGTTTCGCTCCATCTTGCCCAAAGCAGCCTTGC
GGGTGGTGGAGGAGTCCTGGAACGCCTACCCCTACACCCGAACAAGGTTCACCTGCCCCTTTGT
GGAGAAGTTCTCCATTGACATTGAAACCTTTTATAAGACAGACACTGGGGAAAACAATAATGTG
TTCAACCTGTCTCCTGTGGAAAAGAACCAGCTGATAACAGACATCATCGACATCGTCAAGGATC
CTGTGACCCCCAGTGAGTACAAGACAGAAGAAGACCCCAAGCTCTTCCAGTCGATCAAGACTCG
CCGGGGACCTCTCTCTGAAAACTGGATTCAGGAGTACAAGAAGCGGCTCCTCCCCATCATGTGC
GCCTACAAGCTCTGTAAGGTGGAGTTCCGGTACTGGGGCATGCAGTCCAAGATCGAGAGGTTTA
TCCATGACACAGGCTTGCGGCGGGTGATGGTGAGGGCCCACCGGCAGGCCTGGTGCTGGCAGGA
CGAATGGTATGGGCTGACCATGGAGAAAATCCGAGAGCTGGAGAAGGAGGTACAGCTCATGCTG
TCCCGCAAAATGGCCCAGTTTTCGGAGGAAGGACCATCAGAACTAAGCAAGGAGAGTACAATCA
AGGACCAGGCAACTGGAGCAACTCCTGAACCCAGCAGCAGCAATGGGGAGTCTCTGGGGCGGGG
TCTGAAGAAGCAGTGGTCCACCTCCTCCAAGTCCTCAAGGTCCTCCAAGCGCGGAGCCAGCCCC
TCCCGGCATAGCATCTCAGAGTGGAGAATGCAGAGTATCGCCAGGGACTCTGACGAAAGCTCAG
AAGAAGAGTTCTTCGATGCACAAGAAAACCTGCAGCACAAGGAGGAAATGTACACCAAGGACAT
CACCAAGTGGAGCTCCAATGACCTCATGGACAAAATGGAGAATCCAGAGCCTGAGGAATCACAG
GACTCTCTCTACCACCAGAGTGGCTCTGAGTTCAGGGTGGCCTCCAGTGTGGAGCAGCTGAACA
CCATCGAGGATGAGGTGAGCCAGCCACTAGCCACACCACCCTCCAAGATTCACGTGCTGCTGCT
GGTGCTGCATGGAGGCACTATCCTGGACACGGGAGCGGGTGACCCCAGCTCCAAGCAGGGTGAC
ACCAACACTATCACCAATGTGTTCGACACCGTCATGCGTGTGCACTACCCCAGTGCCCTAGGCC
ACCTAGCCATCCGCCTGGTGCCCTGCCCACCCATCTGTGCCGATGCCTTCGCCCTCGTCTCCAA
CCTCAGTCCCTATGGCCATGATGAGGGCTGTCTGTCTAGCAGCCAGGACCACATCCCCCTGGCT
GCTCTGCCCCTGCTGGCCACTTCCTCACCCCAGTACCAGGAGGCAGTTGCTACAGTGATTCAGC
GGGCCAACCTGGCCTATGGAGACTTTATCAAGTCCCAGGAAGGCGTGACCTTCAACGGACAGGT
CTGCCTGATTGGAGACTGTGTCGGGGGCATTCTGGCGTTTGATGCCTTGTGCTACAGTGGCCAG
CCAGTGTCTGAGAGCCAGAGCAGTAGCCGCCGGGGCAGTGTGGTCAGCATGCAGGACGCTGACC
TGCTGTCCCCGGGCATCCTGGTGAATGCAGCACACTGCTCCGGTGGTAGTGGCGGTGGCAGTGG
TGGAGGCTCCAGCCTGGAGAGCAGCCGGCATCTGAGCCGTAGCAACATTGACATCCCCCGAAGC
AACGGCACGGAGGACTCCAGAAAGCAGATGCCTCGCAAAAGGAGCGACTCCTCCACCTATGAGC
TGGACACCATCCAGCAGCACCAGGCCTTCCTGTCCAGCCTCCATGCCAGCGTACTGAGGAATGA
ACCCAGCTCCCGCCGCTCAAGCAGTTCCACGATGCTGGACGGTGCCGGGGCCCTGGGCAAGTTT
GACTTCGAGATCGCCGACCTCTTCCTCTTCGGGTGCCCACTGGGGCTAGTCCTAGCCTTGAGGA
AAACAGTCATCCCCTCCCTGGATGTTTTCCAGCTGCGGCCAGCGTGTCAGCAAGTGTACAACCT
CTTCCACCCTGCGGACCCTTCAGCCTCCCGCCTGGAACCGCTGCTGGAGCGGCGTTTCCACACC
CTGCCGCCCTTCAACATCCCTCGATACCAGCGCTACCCGCTGGGGGATGGCTGTTCCACACTGC
TGGCGGATGCGCTCCAGACCCACAACACAGTCTTCCAAGAGCATGCAGCCCCCTCGTCACCCGG
CACAGCCCCTGCTAGCCGTGGCTTCCGCAGAGCCAGTGAGATCAGCATCGCCAGTCAGGTGTCA
GGCATGGCGGAGAGCTACACAGCATCCGGCATTGCCCAGATTGCTGCCAAGTGGTGGGGCCAGA
AGCGGATTGACTACGCCCTGTACTGCCCCGACGCCCTCATGGCCTTCCCCACAGTGGCCCTGCC
CCACCTCTTCCATGCCAGCTACTGGGAGTCAACCGATGTGGTCTCCTTTCTGCTGAGACAGGTC
ATGCGGCACGACAGCGCGAGCATCCTAGAGCTGGACGGCAAGGAGGTGTCCGTGTTCACGCCTT
CGCAGCCCAGGGAGAAGTGGCAGCGCAAGAGAACCCACGTGAAGCTCCGGAACGTGGCAGCCAA
TCACCGGATCAATGATGCAGTTGCCAATGAGGACGGCCCACAGGTTGTGACAGGCCGGTTCATG
TACGGGCCCTTAGACATGGTCACCCTGACTGGGGAAAAGGTGGATGTGCACATCATGACGCAGC
CGCCCTCAGGTGAGTGGCTGTACCTAGACACTCTAGTGACCAACAGCAGTGGGCGTGTCTCCTA
CACGATTCCAGAAACACACCGCCTGGGGGTGGGCGTGTACCCTATCAAGATGGTGGTCAGGGGA
GACCACACATTTGCCGACAGCTACATCACTGTGCTCCCCAAGGGCACAGAGTTTGTGGTCTTCA
GTATCGATGGCTCCTTTGCGGCTAGCGTGTCCATCATGGGCAGCGACCCCAAGGTGCGCGCCGG
GGCTGTGGACGTGGTGCGACACTGGCAGGACCTGGGCTACCTCATCATCTATGTGACCGGCCGG
CCGGACATGCAGAAGCAGCGGGTGGTGGCATGGCTGGCTCAGCACAATTTCCCTCACGGTGTGG
TGTCCTTCTGTGATGGCCTGGTGCACGACCCGCTGCGCCACAAGGCTAACTTTCTGAAGCTGCT
CATCTCTGAGCTGCACCTGCGCGCGCATGCGGCCTACGGCTCCACCAAGGATGTGGCCGTCTAC
AACTCCATCAGCCTTTCTCCCATGCACATCTACATTGTGGGCCGCCCCACCAAGAAGTTGCAGC
AGCAGTGTCAGTTCATCACAGACGGCTACGCGGCCCACCTGGCCCAGCTCAAGTACAATCACCG
GGCGCGGCCAGCGCGGAACACAGCAACGCGCATGGCTTTGCGCAAGGGCAGCTTCGGTCTGCCT
GGCCAAGGTGACTTCCTTCGCTCCCGGAATCACCTGCTCCGCACCATCTCGGCTCAGCCCAGTG
GGCCCAGCCATCGGCACGATCGGACACAGACCCAGATGGACTTGGAGCAGCGGGGCCAGCGCAG
CATGAGCATGGCGGCCAGTTGCTGGGGCCGTGCCATGGCAGGCCGGCTTGAACCCGGGGCAGCC
ACAGGACCCAAGTAGGACCCCCTCAGGAGGCGCTGTGGTCTCCATGGTGCTAGGCCAGGGCACC
GGCCCTCCTGGGCACACGTAGGTGGCTGGGGACACAGACAGGACCTGAGAGCTTGTCCCGGGGC
CTCTTGGAAGACAGCCATGCCAACCCAGTCCTCCCAGCCTTGCCCAATGCCCTAGGCTCTGAGG
AGCCCAGCTAGTCATGGAAACTGGCAGGAGGTCCAGCCCATGACGGAAGAGGAACCAGGATCGG
CCACTTAGCCCAGCCTGGGAGGCATTCCTGGACGTCTTGCTCTGTGTTGATCTCTCAGCCTCCT
GGTGGCAGGCATGGGTCTTGGCCTTGCCTGTCACCTCCCTGTCCACTGGCGCCCCTTCCCATTT
GGCAGCAGCTCCAATGGGGTCTAACCTGCTTCTTGTTGACTCCAGTTTTCAACTGTCCAACCTC
ACTGGTTTTGCACTGGTTTTTGAGAGTGGAGACCCGTTACCACCTCCTGGCTCCAGACATGTTG
ACATGCATGAAAATCCAGTCTCTGCTGATCCAGGGCCTGTCACCACACAGAATATTCCAGTGTG
GAAAGTTTTCACGCAAGCAGGAGAGAAAGGCCATACCTTAGTTTCTGCTGCCTGCCTGGGCTGC
CGACACCACAGCAGCCCGATGGCAGTCCCAGACTGCTACCCACCTGTCCACCTGCCCCACCCAG
AGCTCAGTGCAGTCCCAGAGCCGATGTCACTCCGGGCCCTGAGCACAGCACAGGTGTGAGGCCA
GGAAAGTGCACGGCTGGCTCTTCGTAGCCCACCTTGGGCAGCTGGACCTGAAGAGGCCTGGCCT
CCACCTCTACTCCTCGCCGGCCATGGGCGGGGACCCCGTGCCATGGCTGCTGCCCACCGTGTTT
CTACGCCTTTCTACTTCTCCATCCGGTTTCTATAAGGTTTTTTTTAACAGGCAATCCTGGGCTG
CTTCCTTTTCTTAACTCAGTGTCAGCGCAGCCTGCTACATTAGGAACACCCAGCACTGTGACAG
GGTCCCACTCAGTCTGGCCTGTGGGCCCTGCACCTGGCCCACTTGGCAAGGTGTGGGTTTCTTG
CCTCACCTGACCCACAATTCCACCGACTTCCTACTCTGGTGTGGGTGGGGCTCTTAGGTTTTCT
TAATGCCATTCTGTTTTAATGTCGACTCCAAGAAGCCACAGCTCACATGTCAGCCTGAGGGCGT
ACAGCCATTTTATTTCTCTCCAAACAAGGATGGGCATCTTACACGCTGGGTCTGGGCCCTGCCT
TCCGCACAGCACTGACCACGACCCTACTGCACCTTCTGTGTTGGCTGAGCTCACGGAGCTCAGG
CCTCCTGTCCAGTGACGGGGCTCTGCTTGAGTAGCTGCCAAGCTGGACTCAGACTCAGGGCCCC
GTGGCTGGGTCAAGAGGCGTATAGGAGACACTGACTTTGCTGTGTAGTTACGTACAGCACAGGG
GCGTGGGATTCCCGCCACGGCCGGTCTACACGGGAAGAAAGCTATTTATTTTGTGCAGAGGAAA
AAAAAATGTCTGGAGGGGTGAGGCCTTCAGGGTCTCCTCATCCATGTAGCTTTGTGCTGTTCCC
AGCGTTCTGTATAAAGCAGTGATTATCTTATGGACCAAGATTCCATGGAGCTGTCACGGTAAAA
GTGCAATATTTGCCCCACCACTCCCACAGGAAGCTGCTGGCCCGACAATCACTGCCCCATTGCG
GGCACCAGGGGCCAGGGCCTCCTCCCTCAGGCCCCCCGTCTTGCCTCAGCTGAGGTGACTAGCC
ATCGGGAGAAGCACCTAGAAGCCTCAGGCCACTTGCAGTCAAGGCAAGGGAGGTCCTGGGGTCA
GTGGGCTTGGTCCCTCCCCTGGGCAGCCCCCTGTGGCTCTGAATGCCCATGCTTGCCCAGCCGC
CAGCCATGCCAAGGACAACAGCAATAGTCCCCTGGGCTCTCCCAGGGCCCTCAGCCATAGATGG
TGAGACGGGCAGCCTTCCCCAAAACCTCACTCAAGTCTGCTTTTTGCCTCCCTCGAGATTCCCT
TTGGCTCATTCTCTTGAGGAAGCCCCACTTTTACAGAAAGTAAGAGAGGAAGGTCAAAGTCCTT
TAAAAATACCAAAAAAATGTTTACAGTGTCAGGTGCTGAGCTGCAGGGCTCAGGCCTGGCCATT
CGTAACCAAAGGGTGAGGCAGACCTTGCTGACTGCCACCCACCCCAGGCCTGTTAGAATAGAAG
CCTTAGTCAGTCCCTCCCCGTCCCCAGTCCCCAGGACTGAGCCTTGATGCCACCCAACACCAAC
CACCTGCCTTCTCTTAGATTTCTGAAGAAGGATTCAGCAAAGCCCATCCCCTTCCTGGCTCTGT
GTGAGCTAGCCACCATTCTACCCTGTTTTACCTTCACATCTCAGACACCTCCCATCTTTGTCCT
TGTACTGTCTGTTCCTCTGGACCATTGTGTGAACTGTCCTGACCCCCCATGCTGTCCCTGCATC
GTCTGGCCTGAGTGTGCTCTCTGTATACTGTGTCACAGTCTGTTACACCAATTAAAGAAGCAGG
AGGCTT

hide sequence

RefSeq Acc Id:

XM_039089445 ⟹ XP_038945373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,399 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,347,460 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089446 ⟹ XP_038945374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,067,278 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,406,358 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089447 ⟹ XP_038945375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,400 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,347,455 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089448 ⟹ XP_038945376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,064,292 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,402,306 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089449 ⟹ XP_038945377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,066,268 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,405,333 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089450 ⟹ XP_038945378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,064,292 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,402,306 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089451 ⟹ XP_038945379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,070,692 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,407,868 - 32,479,103 (+)	NCBI

RefSeq Acc Id:

XM_039089453 ⟹ XP_038945381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,399 - 38,140,046 (+)	NCBI
mRatBN7.2	12	32,347,460 - 32,476,551 (+)	NCBI

RefSeq Acc Id:

XM_063271303 ⟹ XP_063127373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,067,288 - 38,140,046 (+)	NCBI

RefSeq Acc Id:

XM_063271304 ⟹ XP_063127374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,400 - 38,140,046 (+)	NCBI

RefSeq Acc Id:

XM_063271305 ⟹ XP_063127375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,067,287 - 38,140,046 (+)	NCBI

RefSeq Acc Id:

XM_063271306 ⟹ XP_063127376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,399 - 38,140,046 (+)	NCBI

RefSeq Acc Id:

XM_063271307 ⟹ XP_063127377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,068,122 - 38,140,046 (+)	NCBI

RefSeq Acc Id:

XM_063271308 ⟹ XP_063127378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,399 - 38,129,690 (+)	NCBI

RefSeq Acc Id:

XM_063271309 ⟹ XP_063127379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,008,399 - 38,129,576 (+)	NCBI

RefSeq Acc Id:

XM_063271310 ⟹ XP_063127380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,067,281 - 38,125,633 (+)	NCBI

RefSeq Acc Id:

XM_063271311 ⟹ XP_063127381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,064,292 - 38,125,633 (+)	NCBI

RefSeq Acc Id:

XM_063271312 ⟹ XP_063127382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,064,292 - 38,125,633 (+)	NCBI

RefSeq Acc Id:

XM_063271313 ⟹ XP_063127383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,083,253 - 38,125,633 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100609	(Get FASTA)	NCBI Sequence Viewer
	NP_001424263	(Get FASTA)	NCBI Sequence Viewer
	XP_038945373	(Get FASTA)	NCBI Sequence Viewer
	XP_038945374	(Get FASTA)	NCBI Sequence Viewer
	XP_038945375	(Get FASTA)	NCBI Sequence Viewer
	XP_038945376	(Get FASTA)	NCBI Sequence Viewer
	XP_038945377	(Get FASTA)	NCBI Sequence Viewer
	XP_038945378	(Get FASTA)	NCBI Sequence Viewer
	XP_038945379	(Get FASTA)	NCBI Sequence Viewer
	XP_038945381	(Get FASTA)	NCBI Sequence Viewer
	XP_063127373	(Get FASTA)	NCBI Sequence Viewer
	XP_063127374	(Get FASTA)	NCBI Sequence Viewer
	XP_063127375	(Get FASTA)	NCBI Sequence Viewer
	XP_063127376	(Get FASTA)	NCBI Sequence Viewer
	XP_063127377	(Get FASTA)	NCBI Sequence Viewer
	XP_063127378	(Get FASTA)	NCBI Sequence Viewer
	XP_063127379	(Get FASTA)	NCBI Sequence Viewer
	XP_063127380	(Get FASTA)	NCBI Sequence Viewer
	XP_063127381	(Get FASTA)	NCBI Sequence Viewer
	XP_063127382	(Get FASTA)	NCBI Sequence Viewer
	XP_063127383	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68908	(Get FASTA)	NCBI Sequence Viewer
	EDM13598	(Get FASTA)	NCBI Sequence Viewer
	EDM13599	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041143
	ENSRNOP00000041143.5
	ENSRNOP00000069743
	ENSRNOP00000069743.3
	ENSRNOP00000070314
	ENSRNOP00000070314.2
	ENSRNOP00000095932
	ENSRNOP00000095932.1

RefSeq Acc Id:

NP_001100609 ⟸ NM_001107139

- UniProtKB:

A6J110 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGQGSGVEILENRPYTDGPGGSGQYTHKVYH
VGMHIPGWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDTGENNNVFNL
SPVEKNQLITDIIDIVKDPVTPSEYKTEEDPKLFQSIKTRRGPLSENWIQEYKKRLLPIMCAYK
LCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLTMEKIRELEKEVQLMLSRK
MAQFSEEGPSELSKESTIKDQATGATPEPSSSNGESLGRGLKKQWSTSSKSSRSSKRGASPSRH
SISEWRMQSIARDSDESSEEEFFDAQENLQHKEEMYTKDITKWSSNDLMDKMENPEPEESQDSL
YHQSGSEFRVASSVEQLNTIEDEVSQPLATPPSKIHVLLLVLHGGTILDTGAGDPSSKQGDTNT
ITNVFDTVMRVHYPSALGHLAIRLVPCPPICADAFALVSNLSPYGHDEGCLSSSQDHIPLAALP
LLATSSPQYQEAVATVIQRANLAYGDFIKSQEGVTFNGQVCLIGDCVGGILAFDALCYSGQPVS
ESQSSSRRGSVVSMQDADLLSPGILVNAAHCSGGSGGGSGGGSSLESSRHLSRSNIDIPRSNGT
EDSRKQMPRKRSDSSTYELDTIQQHQAFLSSLHASVLRNEPSSRRSSSSTMLDGAGALGKFDFE
IADLFLFGCPLGLVLALRKTVIPSLDVFQLRPACQQVYNLFHPADPSASRLEPLLERRFHTLPP
FNIPRYQRYPLGDGCSTLLADALQTHNTVFQEHAAPSSPGTAPASRGFRRASEISIASQVSGMA
ESYTASGIAQIAAKWWGQKRIDYALYCPDALMAFPTVALPHLFHASYWESTDVVSFLLRQVMRH
DSASILELDGKEVSVFTPSQPREKWQRKRTHVKLRNVAANHRINDAVANEDGPQVVTGRFMYGP
LDMVTLTGEKVDVHIMTQPPSGEWLYLDTLVTNSSGRVSYTIPETHRLGVGVYPIKMVVRGDHT
FADSYITVLPKGTEFVVFSIDGSFAASVSIMGSDPKVRAGAVDVVRHWQDLGYLIIYVTGRPDM
QKQRVVAWLAQHNFPHGVVSFCDGLVHDPLRHKANFLKLLISELHLRAHAAYGSTKDVAVYNSI
SLSPMHIYIVGRPTKKLQQQCQFITDGYAAHLAQLKYNHRARPARNTATRMALRKGSFGLPGQG
DFLRSRNHLLRTISAQPSGPSHRHDRTQTQMDLEQRGQRSMSMAASCWGRAMAGRLEPGAATGP
K

hide sequence

Ensembl Acc Id:

ENSRNOP00000070314 ⟸ ENSRNOT00000084587

Ensembl Acc Id:

ENSRNOP00000041143 ⟸ ENSRNOT00000048528

Ensembl Acc Id:

ENSRNOP00000069743 ⟸ ENSRNOT00000091084

RefSeq Acc Id:	XP_038945375 ⟸ XM_039089447
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945373 ⟸ XM_039089445
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945381 ⟸ XM_039089453
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945378 ⟸ XM_039089450
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945376 ⟸ XM_039089448
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945377 ⟸ XM_039089449
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945374 ⟸ XM_039089446
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945379 ⟸ XM_039089451
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUE0 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095932 ⟸ ENSRNOT00000110818

RefSeq Acc Id:	XP_063127376 ⟸ XM_063271306
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127378 ⟸ XM_063271308
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063127379 ⟸ XM_063271309
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063127374 ⟸ XM_063271304
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127382 ⟸ XM_063271312
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JXL0 (UniProtKB/TrEMBL), A0A9K3Y8B5 (UniProtKB/TrEMBL), B5DF34 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127381 ⟸ XM_063271311
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JXL0 (UniProtKB/TrEMBL), A0A9K3Y8B5 (UniProtKB/TrEMBL), B5DF34 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127380 ⟸ XM_063271310
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JXL0 (UniProtKB/TrEMBL), A0A9K3Y8B5 (UniProtKB/TrEMBL), B5DF34 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127375 ⟸ XM_063271305
- Peptide Label:	isoform X3
- UniProtKB:	F1LXD6 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127373 ⟸ XM_063271303
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063127377 ⟸ XM_063271307
- Peptide Label:	isoform X4
- UniProtKB:	A6J110 (UniProtKB/TrEMBL), A0A0G2JW50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127383 ⟸ XM_063271313
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JXL0 (UniProtKB/TrEMBL), A0A9K3Y8B5 (UniProtKB/TrEMBL), B5DF34 (UniProtKB/TrEMBL)

Protein Domains

DDHD Phosphatidylinositol transfer protein N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LXD6-F1-model_v2	AlphaFold	F1LXD6	1-1281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698622

Promoter ID:

EPDNEW_R9141

Type:

single initiation site

Name:

Pitpnm2_1

Description:

phosphatidylinositol transfer protein, membrane-associated 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	37,829,639 - 37,829,699	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310867	AgrOrtholog
BioCyc Gene	G2FUF-19349	BioCyc
Ensembl Genes	ENSRNOG00000029260	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048528	ENTREZGENE
	ENSRNOT00000048528.6	UniProtKB/TrEMBL
	ENSRNOT00000084587	ENTREZGENE
	ENSRNOT00000084587.3	UniProtKB/TrEMBL
	ENSRNOT00000091084	ENTREZGENE
	ENSRNOT00000091084.3	UniProtKB/TrEMBL
	ENSRNOT00000110818	ENTREZGENE
	ENSRNOT00000110818.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.530.20	UniProtKB/TrEMBL
	3.40.50.1000	UniProtKB/TrEMBL
InterPro	DDHD	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	HAD_sf	UniProtKB/TrEMBL
	LNS2/PITP	UniProtKB/TrEMBL
	PI_transfer	UniProtKB/TrEMBL
	PI_transfer_N	UniProtKB/TrEMBL
	START-like_dom	UniProtKB/TrEMBL
KEGG Report	rno:304474	UniProtKB/TrEMBL
NCBI Gene	304474	ENTREZGENE
PANTHER	MEMBRANE-ASSOCIATED PHOSPHATIDYLINOSITOL TRANSFER PROTEIN 2	UniProtKB/TrEMBL
	PI_transfer	UniProtKB/TrEMBL
Pfam	DDHD	UniProtKB/TrEMBL
	IP_trans	UniProtKB/TrEMBL
	LNS2_PITM1-3	UniProtKB/TrEMBL
	PITM1-3	UniProtKB/TrEMBL
PhenoGen	Pitpnm2	PhenoGen
PRINTS	PITRANSFER	UniProtKB/TrEMBL
PROSITE	DDHD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029260	RatGTEx
SMART	DDHD	UniProtKB/TrEMBL
	LNS2	UniProtKB/TrEMBL
Superfamily-SCOP	Bet v1-like	UniProtKB/TrEMBL
	HAD-like_dom	UniProtKB/TrEMBL
UniProt	A0A0G2JW50	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2JXL0	ENTREZGENE
	A0A8I6AUE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A9K3Y8B5	ENTREZGENE, UniProtKB/TrEMBL
	A6J110	ENTREZGENE, UniProtKB/TrEMBL
	B5DF34	ENTREZGENE, UniProtKB/TrEMBL
	F1LXD6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A0G2JXL0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Pitpnm2	phosphatidylinositol transfer protein, membrane-associated 2	LOC102552626	uncharacterized LOC102552626	Data merged from RGD:7563841	737654	PROVISIONAL
2013-12-17	LOC102552626	uncharacterized LOC102552626			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Pitpnm2	phosphatidylinositol transfer protein, membrane-associated 2	Pitpnm2_predicted	phosphatidylinositol transfer protein, membrane-associated 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pitpnm2_predicted	phosphatidylinositol transfer protein, membrane-associated 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message