Krt7 (keratin 7) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Krt7 (keratin 7) Rattus norvegicus
Analyze
Symbol: Krt7
Name: keratin 7
RGD ID: 1310865
Description: Predicted to be a structural constituent of skin epidermis. Predicted to be involved in intermediate filament organization and keratinization. Predicted to be located in cytoplasm. Predicted to be active in keratin filament. Orthologous to human KRT7 (keratin 7); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CK-7; cytokeratin-7; K7; keratin 7, type II; keratin complex 2, basic, gene 7; keratin, type II cytoskeletal 7; keratin-7; Krt2-7; LOC300242; type II keratin Kb7; type-II keratin Kb7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,407,626 - 134,423,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7134,407,584 - 134,423,786 (+)EnsemblGRCr8
mRatBN7.27132,528,881 - 132,545,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7134,330,597 - 134,346,874 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,560,103 - 136,576,380 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,469,880 - 136,486,169 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,059,731 - 143,075,907 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)Ensemblrn6Rnor6.0
Rnor_5.07140,861,000 - 140,877,153 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47140,160,829 - 140,226,474 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7128,994,095 - 129,010,230 (+)NCBICelera
RGSC_v3.17140,237,243 - 140,252,129 (+)NCBI
Cytogenetic Map7q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
actinomycin D  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-4-oxoretinol  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-carotene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dimethylselenide  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
folic acid  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
furan  (EXP)
furfural  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
hydroxyl  (ISO)
inulin  (ISO)
isotretinoin  (ISO)
kojic acid  (ISO)
lamivudine  (ISO)
manganese(II) chloride  (EXP)
methamphetamine  (EXP)
N-nitrosomorpholine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
perfluorobutyric acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quartz  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetrathiomolybdate(2-)  (ISO)
titanium dioxide  (ISO)
trametinib  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zearalenone  (EXP)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
intermediate filament  (IEA)
keratin filament  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia. Badea L, etal., Hepatogastroenterology. 2008 Nov-Dec;55(88):2016-27.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury. Gralinski LE, etal., mBio. 2013 Aug 6;4(4). pii: mBio.00271-13. doi: 10.1128/mBio.00271-13.
5. Clinicopathological study on cholangiolocellular carcinoma suggesting hepatic progenitor cell origin. Komuta M, etal., Hepatology. 2008 May;47(5):1544-56.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Overexpression of neu-related lipocalin (NRL) in neu-initiated but not ras or chemically initiated rat mammary carcinomas. Stoesz SP and Gould MN, Oncogene. 1995 Dec 7;11(11):2233-41.
11. FOXA1 and CK7 expression in esophageal squamous cell carcinoma and its prognostic significance. Xu Y, etal., Neoplasma. 2018 Mar 14;65(3):469-476. doi: 10.4149/neo_2018_170529N384.
Additional References at PubMed
PMID:2459129   PMID:15085952   PMID:21630459   PMID:23533145   PMID:27525410  


Genomics

Comparative Map Data
Krt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,407,626 - 134,423,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7134,407,584 - 134,423,786 (+)EnsemblGRCr8
mRatBN7.27132,528,881 - 132,545,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7134,330,597 - 134,346,874 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,560,103 - 136,576,380 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,469,880 - 136,486,169 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,059,731 - 143,075,907 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)Ensemblrn6Rnor6.0
Rnor_5.07140,861,000 - 140,877,153 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47140,160,829 - 140,226,474 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7128,994,095 - 129,010,230 (+)NCBICelera
RGSC_v3.17140,237,243 - 140,252,129 (+)NCBI
Cytogenetic Map7q36NCBI
KRT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,233,243 - 52,255,853 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,232,520 - 52,252,186 (+)Ensemblhg38GRCh38
GRCh371252,627,027 - 52,642,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,913,221 - 50,928,976 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341250,913,220 - 50,928,976NCBI
Celera1251,429,401 - 51,445,152 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,659,684 - 49,676,166 (+)NCBIHuRef
CHM1_11252,593,314 - 52,609,064 (+)NCBICHM1_1
T2T-CHM13v2.01252,196,307 - 52,215,830 (+)NCBIT2T-CHM13v2.0
Krt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,310,284 - 101,325,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,308,924 - 101,328,194 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3815101,412,403 - 101,427,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,411,043 - 101,430,313 (+)Ensemblmm10GRCm38
MGSCv3715101,242,834 - 101,258,237 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3615101,240,437 - 101,255,827 (+)NCBIMGSCv36mm8
Celera15103,560,951 - 103,576,262 (+)NCBICelera
Cytogenetic Map15F1- F2NCBI
cM Map1556.88NCBI
Krt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,533,377 - 2,598,833 (+)Ensembl
ChiLan1.0NW_0049555472,584,425 - 2,598,770 (+)NCBIChiLan1.0ChiLan1.0
KRT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21041,946,442 - 41,962,674 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11241,943,205 - 41,958,887 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,514,021 - 36,529,721 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,291,244 - 37,307,300 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,291,244 - 37,307,341 (-)EnsemblpanPan2panpan1.1
KRT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,812,709 - 2,827,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,426,876 - 43,441,582 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0272,811,546 - 2,826,249 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,828,289 - 2,843,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,814,255 - 2,828,967 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,825,075 - 43,839,789 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Krt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,508,247 - 63,571,032 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,641,587 - 9,656,524 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,641,587 - 9,656,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,555,728 - 17,570,581 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1517,553,192 - 17,570,582 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KRT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,379,460 - 48,394,638 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,379,465 - 48,394,643 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037197,697,351 - 197,712,521 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816105,758 - 134,567 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624816103,285 - 168,486 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Krt7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11261,660,490 - 261,675,608 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Krt7
100 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:107
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000010660
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
AA945785  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27132,544,761 - 132,544,872 (+)MAPPERmRatBN7.2
Rnor_6.07143,075,617 - 143,075,727NCBIRnor6.0
Rnor_5.07140,876,863 - 140,876,973UniSTSRnor5.0
RGSC_v3.47140,175,402 - 140,175,512UniSTSRGSC3.4
Celera7129,009,940 - 129,010,050UniSTS
RH 3.4 Map71065.1UniSTS
Cytogenetic Map7q36UniSTS
AU048706  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27132,539,716 - 132,539,825 (+)MAPPERmRatBN7.2
Rnor_6.07143,070,574 - 143,070,682NCBIRnor6.0
Rnor_5.07140,871,820 - 140,871,928UniSTSRnor5.0
RGSC_v3.47140,170,380 - 140,170,488UniSTSRGSC3.4
Celera7129,004,889 - 129,004,997UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 64 134 91 90 59 69 59 6 326 162 11 106 81 92 31 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000010660   ⟹   ENSRNOP00000010660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7134,407,584 - 134,423,786 (+)Ensembl
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)Ensembl
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087370   ⟹   ENSRNOP00000074444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7143,059,768 - 143,061,223 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087481   ⟹   ENSRNOP00000075566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7132,528,897 - 132,545,032 (+)Ensembl
Rnor_6.0 Ensembl7143,060,597 - 143,075,906 (+)Ensembl
RefSeq Acc Id: NM_001047870   ⟹   NP_001041335
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,407,626 - 134,423,787 (+)NCBI
mRatBN7.27132,528,889 - 132,545,052 (+)NCBI
RefSeq Acc Id: NM_001399745   ⟹   NP_001386674
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,407,626 - 134,423,787 (+)NCBI
mRatBN7.27132,528,889 - 132,545,052 (+)NCBI
RefSeq Acc Id: XM_039080387   ⟹   XP_038936315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,407,991 - 134,423,787 (+)NCBI
mRatBN7.27132,529,246 - 132,545,052 (+)NCBI
Ensembl Acc Id: ENSRNOP00000074444   ⟸   ENSRNOT00000087370
Ensembl Acc Id: ENSRNOP00000075566   ⟸   ENSRNOT00000087481
Ensembl Acc Id: ENSRNOP00000010660   ⟸   ENSRNOT00000010660
RefSeq Acc Id: XP_038936315   ⟸   XM_039080387
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KAX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001041335   ⟸   NM_001047870
- Peptide Label: isoform 1
- UniProtKB: G3V712 (UniProtKB/TrEMBL),   A6KCP5 (UniProtKB/TrEMBL),   A0A0G2KAX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386674   ⟸   NM_001399745
- Peptide Label: isoform 2
- UniProtKB: A6KCP6 (UniProtKB/TrEMBL)
Protein Domains
IF rod

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IG12-F1-model_v2 AlphaFold Q6IG12 1-457 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695674
Promoter ID:EPDNEW_R6195
Type:multiple initiation site
Name:Krt7_1
Description:keratin 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07143,060,975 - 143,061,035EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310865 AgrOrtholog
BioCyc Gene G2FUF-31986 BioCyc
Ensembl Genes ENSRNOG00000008057 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000010660 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  Single helix bin UniProtKB/Swiss-Prot
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot
InterPro IF_conserved UniProtKB/Swiss-Prot
  IF_rod_dom UniProtKB/Swiss-Prot
  Keratin_2_head UniProtKB/Swiss-Prot
  Keratin_II UniProtKB/Swiss-Prot
KEGG Report rno:300242 UniProtKB/Swiss-Prot
NCBI Gene 300242 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  KERATIN, TYPE II CYTOSKELETAL 7 UniProtKB/Swiss-Prot
Pfam Filament UniProtKB/Swiss-Prot
  Keratin_2_head UniProtKB/Swiss-Prot
PhenoGen Krt7 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/Swiss-Prot
PROSITE IF_ROD_1 UniProtKB/Swiss-Prot
  IF_ROD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008057 RatGTEx
SMART Filament UniProtKB/Swiss-Prot
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/Swiss-Prot
  Prefoldin UniProtKB/Swiss-Prot
UniProt A0A0G2KAX7 ENTREZGENE
  A6KCP5 ENTREZGENE, UniProtKB/TrEMBL
  A6KCP6 ENTREZGENE, UniProtKB/TrEMBL
  G3V712 ENTREZGENE, UniProtKB/TrEMBL
  K2C7_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Krt7  keratin 7  Krt7  keratin 7, type II  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-28 Krt7  keratin 7, type II  Krt7  keratin 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Krt7  keratin 7  Krt2-7  keratin complex 2, basic, gene 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Krt2-7  keratin complex 2, basic, gene 7  Krt2-7_predicted  keratin complex 2, basic, gene 7 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Krt2-7_predicted  keratin complex 2, basic, gene 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED