Golt1b (golgi transport 1B) - Rat Genome Database

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Gene: Golt1b (golgi transport 1B) Rattus norvegicus
Analyze
Symbol: Golt1b
Name: golgi transport 1B
RGD ID: 1310691
Description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde transport, endosome to Golgi. Predicted to be located in Golgi membrane and cytosol. Predicted to be part of protein-containing complex. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1B (golgi transport 1B); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: golgi transport 1 homolog B; golgi transport 1 homolog B (S. cerevisiae); LOC362460; RGD1310691; similar to CGI-141 protein, EST AA407874; vesicle transport protein GOT1B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,064,071 - 177,077,165 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4177,064,073 - 177,077,164 (+)EnsemblGRCr8
mRatBN7.24175,333,056 - 175,346,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,333,092 - 175,346,153 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4181,627,959 - 181,639,174 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,412,228 - 177,423,443 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04176,032,787 - 176,044,002 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,606,669 - 176,617,884 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,606,649 - 176,619,710 (+)Ensemblrn6Rnor6.0
Rnor_5.04240,820,407 - 240,831,669 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44179,952,033 - 179,963,246 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4163,865,820 - 163,876,845 (+)NCBICelera
RGSC_v3.14180,197,146 - 180,210,095 (+)NCBI
Cytogenetic Map4q44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-citrinin  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dicrotophos  (ISO)
folic acid  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
GSK-J4  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12761501   PMID:19946888   PMID:28246125  


Genomics

Comparative Map Data
Golt1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,064,071 - 177,077,165 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4177,064,073 - 177,077,164 (+)EnsemblGRCr8
mRatBN7.24175,333,056 - 175,346,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,333,092 - 175,346,153 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4181,627,959 - 181,639,174 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,412,228 - 177,423,443 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04176,032,787 - 176,044,002 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,606,669 - 176,617,884 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,606,649 - 176,619,710 (+)Ensemblrn6Rnor6.0
Rnor_5.04240,820,407 - 240,831,669 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44179,952,033 - 179,963,246 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4163,865,820 - 163,876,845 (+)NCBICelera
RGSC_v3.14180,197,146 - 180,210,095 (+)NCBI
Cytogenetic Map4q44NCBI
GOLT1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,501,789 - 21,518,408 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,501,781 - 21,518,408 (+)Ensemblhg38GRCh38
GRCh371221,654,723 - 21,671,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,546,067 - 21,562,357 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341221,546,066 - 21,562,357NCBI
Celera1226,810,081 - 26,826,721 (+)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,428,737 - 21,445,332 (+)NCBIHuRef
CHM1_11221,620,299 - 21,636,937 (+)NCBICHM1_1
T2T-CHM13v2.01221,380,798 - 21,397,367 (+)NCBIT2T-CHM13v2.0
Golt1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,332,929 - 142,349,584 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,332,947 - 142,349,584 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386142,387,211 - 142,413,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,387,221 - 142,403,858 (+)Ensemblmm10GRCm38
MGSCv376142,335,763 - 142,352,378 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366142,344,465 - 142,361,080 (+)NCBIMGSCv36mm8
Celera6145,447,191 - 145,464,316 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map673.98NCBI
Golt1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,150,261 - 17,164,093 (+)Ensembl
ChiLan1.0NW_00495541317,150,261 - 17,164,108 (+)NCBIChiLan1.0ChiLan1.0
GOLT1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,283,989 - 75,300,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,280,387 - 75,296,776 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,779,889 - 64,796,264 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,383,798 - 67,400,189 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,383,798 - 67,400,189 (-)EnsemblpanPan2panpan1.1
GOLT1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12725,576,724 - 25,590,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2725,578,788 - 25,590,258 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2720,761,612 - 20,775,117 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02725,805,162 - 25,818,872 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2725,792,502 - 25,818,889 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12725,598,054 - 25,611,760 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02725,621,269 - 25,634,773 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02720,937,759 - 20,951,496 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Golt1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,412,196 - 87,421,773 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,334,192 - 5,344,677 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,337,051 - 5,345,183 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLT1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,939,485 - 51,953,315 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1551,939,480 - 51,953,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,215,653 - 55,229,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLT1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,367,122 - 21,383,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,367,162 - 21,383,643 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606913,761,367 - 13,777,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golt1b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16141,095 - 154,136 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Golt1b
65 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:216
Interacting mature miRNAs:249
Transcripts:ENSRNOT00000016937
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4176806581181925369Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
AA818489  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24175,345,854 - 175,346,067 (+)MAPPERmRatBN7.2
Rnor_6.04176,619,408 - 176,619,620NCBIRnor6.0
Rnor_5.04240,833,193 - 240,833,405UniSTSRnor5.0
RGSC_v3.44179,964,770 - 179,964,982UniSTSRGSC3.4
Celera4163,878,369 - 163,878,581UniSTS
RH 3.4 Map41046.1UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000084700   ⟹   ENSRNOP00000070214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4177,064,095 - 177,077,162 (+)Ensembl
mRatBN7.2 Ensembl4175,333,120 - 175,346,153 (+)Ensembl
Rnor_6.0 Ensembl4176,606,649 - 176,619,710 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108416   ⟹   ENSRNOP00000092199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4177,064,073 - 177,077,164 (+)Ensembl
mRatBN7.2 Ensembl4175,333,100 - 175,345,312 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113495   ⟹   ENSRNOP00000079285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4175,333,092 - 175,342,186 (+)Ensembl
RefSeq Acc Id: NM_001113783   ⟹   NP_001107255
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,064,125 - 177,075,340 (+)NCBI
mRatBN7.24175,333,115 - 175,344,331 (+)NCBI
Rnor_6.04176,606,669 - 176,617,884 (+)NCBI
Rnor_5.04240,820,407 - 240,831,669 (+)NCBI
RGSC_v3.44179,952,033 - 179,963,246 (+)RGD
Celera4163,865,820 - 163,876,845 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107914   ⟹   XP_038963842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,064,075 - 177,074,859 (+)NCBI
mRatBN7.24175,333,066 - 175,346,156 (+)NCBI
RefSeq Acc Id: XM_039107915   ⟹   XP_038963843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,064,071 - 177,074,908 (+)NCBI
mRatBN7.24175,333,056 - 175,346,156 (+)NCBI
RefSeq Acc Id: XM_063286374   ⟹   XP_063142444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,064,075 - 177,077,165 (+)NCBI
RefSeq Acc Id: NP_001107255   ⟸   NM_001113783
- UniProtKB: B0BNB0 (UniProtKB/TrEMBL),   A6IMT9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070214   ⟸   ENSRNOT00000084700
RefSeq Acc Id: XP_038963843   ⟸   XM_039107915
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038963842   ⟸   XM_039107914
- Peptide Label: isoform X2
- UniProtKB: A6IMT9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079285   ⟸   ENSRNOT00000113495
Ensembl Acc Id: ENSRNOP00000092199   ⟸   ENSRNOT00000108416
RefSeq Acc Id: XP_063142444   ⟸   XM_063286374
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZME6 (UniProtKB/TrEMBL),   A6IMT9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BNB0-F1-model_v2 AlphaFold B0BNB0 1-138 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693487
Promoter ID:EPDNEW_R4011
Type:initiation region
Name:Golt1b_1
Description:golgi transport 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04176,606,650 - 176,606,710EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310691 AgrOrtholog
BioCyc Gene G2FUF-42494 BioCyc
Ensembl Genes ENSRNOG00000058386 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084700 ENTREZGENE
  ENSRNOT00000084700.3 UniProtKB/TrEMBL
  ENSRNOT00000108416 ENTREZGENE
  ENSRNOT00000108416.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9102153 IMAGE-MGC_LOAD
InterPro Got1 UniProtKB/TrEMBL
  Vesicle_transpt_Got1/SFT2 UniProtKB/TrEMBL
KEGG Report rno:362460 UniProtKB/TrEMBL
MGC_CLONE MGC:187933 IMAGE-MGC_LOAD
NCBI Gene 362460 ENTREZGENE
PANTHER PTHR21493 UniProtKB/TrEMBL
  VESICLE TRANSPORT PROTEIN GOT1B UniProtKB/TrEMBL
Pfam Got1 UniProtKB/TrEMBL
PhenoGen Golt1b PhenoGen
RatGTEx ENSRNOG00000058386 RatGTEx
UniProt A0A0G2JXC0_RAT UniProtKB/TrEMBL
  A0A8I5ZME6 ENTREZGENE
  A6IMT9 ENTREZGENE, UniProtKB/TrEMBL
  B0BNB0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Golt1b  golgi transport 1B  Golt1b  golgi transport 1 homolog B (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Golt1b  golgi transport 1 homolog B (S. cerevisiae)   Golt1b_predicted  golgi transport 1 homolog B (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Golt1b_predicted  golgi transport 1 homolog B (S. cerevisiae) (predicted)  RGD1310691_predicted  similar to CGI-141 protein; EST AA407874 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310691_predicted  similar to CGI-141 protein; EST AA407874 (predicted)  LOC362460_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362460_predicted  similar to CGI-141 protein; EST AA407874 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL