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Gene: Zfp407 (zinc finger protein 407) Rattus norvegicus

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Symbol:

Zfp407

Name:

zinc finger protein 407

RGD ID:

1310645

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF407 (zinc finger protein 407); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307213; RGD1310645; similar to zinc finger protein 407

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF407 (zinc finger protein 407)	HGNC	Ensembl, HomoloGene, Inparanoid, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Zfp407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf407 (zinc finger protein 407)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF407 (zinc finger protein 407)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp407 (zinc finger protein 407)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf407 (zinc finger protein 407)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf407 (zinc finger protein 407)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	znf407	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	79,846,012 - 80,245,177 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	79,846,012 - 80,245,106 (-)	Ensembl				GRCr8
mRatBN7.2	18	77,571,140 - 77,970,282 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	77,571,204 - 77,974,129 (-)	Ensembl				mRatBN7.2
Rnor_6.0	18	81,057,507 - 81,453,682 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	81,057,519 - 81,428,971 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	80,062,434 - 80,498,667 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	80,747,087 - 81,122,758 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	76,195,060 - 76,566,915 (-)	NCBI		Celera
RGSC_v3.1	18	80,821,563 - 81,194,166 (-)	NCBI
Cytogenetic Map	18	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

SHORT STATURE, IMPAIRED INTELLECTUAL DEVELOPMENT, MICROCEPHALY, HYPOTONIA, AND OCULAR ANOMALIES (ISO)

Tsukahara Syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,5-hexanedione (EXP)

2-methylcholine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clotrimazole (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

methapyrilene (ISO)

methotrexate (ISO)

N,N-diethyl-m-toluamide (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

permethrin (EXP)

sulfadimethoxine (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IBA)

metal ion binding (IEA)

nucleic acid binding (IEA)

transcription cis-regulatory region binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp407
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	79,846,012 - 80,245,177 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	79,846,012 - 80,245,106 (-)	Ensembl				GRCr8
mRatBN7.2	18	77,571,140 - 77,970,282 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	77,571,204 - 77,974,129 (-)	Ensembl				mRatBN7.2
Rnor_6.0	18	81,057,507 - 81,453,682 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	81,057,519 - 81,428,971 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	80,062,434 - 80,498,667 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	80,747,087 - 81,122,758 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	76,195,060 - 76,566,915 (-)	NCBI		Celera
RGSC_v3.1	18	80,821,563 - 81,194,166 (-)	NCBI
Cytogenetic Map	18	q12.3	NCBI

ZNF407
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	74,597,870 - 75,065,671 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	74,597,848 - 75,065,671 (+)	Ensembl			hg38	GRCh38
GRCh37	18	72,265,106 - 72,777,627 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	70,471,907 - 70,906,616 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	18	70,474,281 - 70,762,002	NCBI
Celera	18	69,163,335 - 69,596,635 (+)	NCBI		Celera
Cytogenetic Map	18	q22.3	NCBI
HuRef	18	69,029,090 - 69,462,636 (+)	NCBI		HuRef
CHM1_1	18	72,338,141 - 72,772,459 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	18	74,825,251 - 75,295,135 (+)	NCBI		T2T-CHM13v2.0

Zfp407
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	84,225,826 - 84,612,815 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	84,146,152 - 84,607,850 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	84,207,701 - 84,589,539 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	84,128,027 - 84,589,725 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	84,377,093 - 84,758,896 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	84,341,894 - 84,723,697 (-)	NCBI		MGSCv36	mm8
Celera	18	85,275,500 - 85,656,493 (-)	NCBI		Celera
Cytogenetic Map	18	E4	NCBI
cM Map	18	57.53	NCBI

Znf407
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955402	58,036,270 - 58,507,506 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF407
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	92,135,064 - 92,607,087 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	77,827,687 - 78,299,712 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	67,985,750 - 68,451,774 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	71,265,326 - 71,728,825 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

ZNF407
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	4,421,386 - 4,869,396 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	4,422,156 - 4,869,200 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	5,428,601 - 5,876,885 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	4,232,561 - 4,679,918 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	4,233,744 - 4,679,679 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	4,270,722 - 4,718,852 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	4,223,897 - 4,672,337 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	4,395,035 - 4,843,159 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf407
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	18,204,353 - 18,626,035 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936616	3,525,246 - 3,921,359 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936616	3,525,483 - 3,947,163 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF407
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	149,090,789 - 149,516,790 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	149,090,502 - 149,517,494 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	165,164,144 - 165,186,085 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF407
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	4,844,066 - 5,303,034 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	4,844,050 - 5,269,118 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666060	20,581,365 - 21,028,408 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf407
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624806	5,622,629 - 6,074,418 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624806	5,624,108 - 6,106,630 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf407
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	47,791,134 - 48,161,895 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp407
2477 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	13
Count of miRNA genes:	12
Interacting mature miRNAs:	13
Transcripts:	ENSRNOT00000065201
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
2303584	Gluco55	Glucose level QTL 55	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	18	50795212	86134022	Rat
1331730	Scl27	Serum cholesterol level QTL 27	3.826		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	54490801	86134022	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
631834	Sach3	Saccharin preference QTL 3	3.9	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	18	38575919	83575919	Rat
738008	Hcar14	Hepatocarcinoma resistance QTL 14	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion number (CMO:0001462)	18	57825243	85493247	Rat
634333	Pia19	Pristane induced arthritis QTL 19	3.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	76272104	81806852	Rat
631518	Bw11	Body weight QTL 11	2.8		body mass (VT:0001259)	body weight (CMO:0000012)	18	36121626	81121626	Rat
6893683	Bw110	Body weight QTL 110	2.7	0.002	body mass (VT:0001259)	body weight (CMO:0000012)	18	45620306	86134022	Rat
8694366	Abfw8	Abdominal fat weight QTL 8	6.38	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	18	48915737	86134022	Rat
70172	Eae15	Experimental allergic encephalomyelitis QTL 15		0.001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	18	79484311	84129249	Rat
7794793	Mcs34	Mammary carcinoma susceptibility QTL 34	1.54		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	18	65635567	85897775	Rat
9589041	Epfw12	Epididymal fat weight QTL 12	17.08	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	18	48915737	86134022	Rat
8694432	Bw165	Body weight QTL 165	3.81	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	48915737	86134022	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	65846447	86134022	Rat
1598832	Glom11	Glomerulus QTL 11	2.9		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	53266671	86134022	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
1331770	Bp234	Blood pressure QTL 234	3.807		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	45620306	86134022	Rat
2303571	Bw92	Body weight QTL 92	3		body mass (VT:0001259)	body weight (CMO:0000012)	18	50795212	86134022	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31610505	85493247	Rat
724542	Kidm2	Kidney mass QTL 2	2.6		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	18	61446853	86134022	Rat
61367	Iddm4	Insulin dependent diabetes mellitus QTL 4	2.33	0.0074	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	40462383	85462383	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat

Markers in Region

D18Got66

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	77,629,172 - 77,629,361 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	81,115,532 - 81,115,720	NCBI	Rnor6.0
Rnor_5.0	18	80,161,975 - 80,162,163	UniSTS	Rnor5.0
RGSC_v3.4	18	80,805,586 - 80,805,774	RGD	RGSC3.4
RGSC_v3.4	18	80,805,586 - 80,805,774	UniSTS	RGSC3.4
Celera	18	76,253,058 - 76,253,246	UniSTS
RGSC_v3.1	18	80,879,036 - 80,879,224	RGD
RH 3.4 Map	18	813.3	RGD
RH 3.4 Map	18	813.3	UniSTS
RH 2.0 Map	18	53.6	RGD
Cytogenetic Map	18	q12.3	UniSTS

RH138026

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	77,790,208 - 77,790,418 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	81,271,574 - 81,271,783	NCBI	Rnor6.0
Rnor_5.0	18	80,317,625 - 80,317,834	UniSTS	Rnor5.0
RGSC_v3.4	18	80,963,848 - 80,964,057	UniSTS	RGSC3.4
Celera	18	76,409,793 - 76,410,002	UniSTS
Cytogenetic Map	18	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065201 ⟹ ENSRNOP00000063687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	79,846,012 - 80,245,106 (-)	Ensembl
mRatBN7.2 Ensembl	18	77,571,204 - 77,974,129 (-)	Ensembl
Rnor_6.0 Ensembl	18	81,057,519 - 81,428,971 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157739 ⟹ ENSRNOP00000107995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	79,846,012 - 80,245,106 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158785 ⟹ ENSRNOP00000108460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	79,846,428 - 80,245,106 (-)	Ensembl

RefSeq Acc Id:

NM_001427664 ⟹ NP_001414593

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	79,846,012 - 80,245,106 (-)	NCBI

RefSeq Acc Id:

XM_008772221 ⟹ XP_008770443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	79,846,012 - 80,245,177 (-)	NCBI
mRatBN7.2	18	77,571,140 - 77,970,282 (-)	NCBI
Rnor_6.0	18	81,057,507 - 81,453,682 (-)	NCBI

Sequence:

show sequence

AGGATTAAAGGCATGCACCACCACTGCCCAGCTTATGTCTCTAGACTTAAATTGTCAGGTAAAG
TCAATCATTTTGTCCCTGCACTTAAATCACATGGGTGCAAAGATGAATTCAATCCTATGATGCT
GTGGTAATTATTGACTATTGTGGCTGGAGTCAGGGAAATGATCCTCAATGGCTCATGTGCTGGG
CCATATCTTCCCAGGCTGTTGGAAGTGCTTGGAAGAAGATTGTGAAACTTTTGAGACATGGGGC
AGAAAAGGGTTACTAGGGGAGGGCCCTTGAAATTTATTATCACCTCTGGTTCCTGCCTGAGGCT
TGTTTCCCTGATCTGCCTAAGAGTACCAGCAGCCACAAGCTTCTGTTAACCTCTGAGGAAGCCA
CTACCCATTCCTTCCTCAGCATAGGAATGTATACTCTCGAACTCTGAGCCAAAATAAATCCTTT
AAACTGCTTTTGTTAGGTGTTCGAGCATTTTGTTACAGGGGTTAAGGATATACTTTCCTATCCA
GCATCCATCCTTCCTCCCTCCCTTTCTTTCTCTCTCTCTCTCTTTCTTTTTTTTTTGGAGACAG
GGTTTCTCTGTGTAGTCCTGGCTGGCTGAGATTCAGAGATCATCCTGCCCCTGCCTTTTGAGTG
CTGAGATTAAAGGCGTGTGACATCACCACCCCGTCCCTTCTTTTCAAATTATTATTTAGCTTAT
ATACTCGTCCTGTCCCAACTCTGCTAACTGTAGGTACTGTGGAAATTATTTAAGAGCCAGGGAC
CACTGGAGTGCCACATTCACGGAGTGCCAAGTCCACGGTATTTTTATTTTTAAGATTAGACGTG
TAAACCAATTTTGGTATGACGTGTGAGTCAGCACTATAGACTAGAAAAGGTTGATTCGAGTTTA
GAGTTATGTCCCACTTTTACTAGCTGTGTAATCTTGGAATCGGTTATTTGATTCTCTTAGATTG
CGATTCCCTACCGTGGATACGTGAATCACATTTAAAATTCAACAAGATTATTCTCAGGAACCAT
TAGATTCGCGGCTCCCTGCGGTCAACACATGAAAGACCCCATTCTGGTGTCGTTGGATTATCTG
TGTTCATTATCTGAGGTAGCACTCTGTCACTCACAGCGTTCATATAGGAACCACAGGGGCTCTA
AGCCAACTCTTTGAGGGACCCGATGCAGAAGGAAGGCCCTAGCGCAGGCCCCGCCCCTGCCCTT
CCCAGCACCGCCCTCGGGTTCGAGGGATGGAGACAGGGCGCGGGTGCTGCGGGTACCGTCCCAC
TGAGCATCCTCGGGAAGGCGACTGTCCTCCCACGAAGAACCGGCCGTCAGTGAGCCAAAACAGC
ATCTGCCCTACAGATTGACTCTCTAGGCTTTCCGTTTCCCTTCCAGCAGGGAGGGTGGAACTTC
CTGTTTTCTCCCTAGGAACTTCCGGAAAGTACCGATGGGTTGAAAACAAATCGACACGCAGAGC
CGCCGGCCATTCGAGGAAAAACAGAGAACGTGAATTTAGGTCTTTAGCCAAGGCAATTGTGAAA
TCTTTGTTTTTCGGTTATGGTGTTCCGTGCTCCATCCAGCGTAGTCGCCCTGGGAACCGCCGGA
AGTCGCTCAACGGAGAGACAGGAAGTCCCGCCTCTTCCTCCCAGAGGGAAGACGGTGAGCCGGA
GGAGTCAGTCAGAGGGCCGAGCAGGAGCGATTTCCACGACAAACAGGTTGTGAGCCCCAGTTAA
ATTCGACTCTGACAGAAGAAGCGTCATCAGAGGCTGACTGAGAATGGATTCGGAGAGCAGACAT
GAAAACGATGAGGACGGAAGTGTTAAGGGAGCAGATCCAAGGAGTGTTCCGTCCTGTGATGGCA
GCCGTGGGCCTGTGTCTGACGACAGAGCAAATGCCTCTGAGAATTTTACGAGCAAAAGAATTTT
TTCAGAATCATCCAACTCGGACAGCATTGCTATGGAGGAAGACAGAATTGAACGTGCTTCCAAA
CGACTGAGAACAGAGGCAGTGGAGTCCGAGACAAGAGAGCAGGGTGCCTGTGGGTTGGGCACTG
CAGAAGTTAATGTCCATTTGGCTGAAATGGAAAAGGAGGTCTTTCCAGCAAACCACTCAGAAGA
AGGCAGAGCGCTTCCCAATGTTTCCCCCTCGTCCTGTGATTTTAGCACGTCCGATACTCTTCCT
CTGAAAGTAGATGACGTGAAGAAGCCTGCTCAGGAAATGGTTGCCCTTGATCCTGAAAGACACA
CCCCTTTTCCTCCAGAAGAAGTGAGCGTTAGCTGTAGCTTTGGAAGTGTAGAGACAGGACTCAG
GTGTGGTGTGTGTGGCTGTTCATTTTCCTCTTGCTCTGCTTTGGAAAAGCATGTGGAATGTCAT
GTGGGACAGGGGAAGGACCGTTCCTGCTGCCATTGTAGCCACAGAGCAGAGAGCAGCTCGTCTC
CTCATGTGCATGCCAAACATAGTCAAGGACCACAGAAAGTCTTTTCCTGTGACCTCTGTGGCTT
TCACTGTGCTGAAGAAAACCTGTTGGATGCACATTATCTTGGCAAAACACACCTTCGTCGTCAG
AACCTTGCTGCTCGTGGAGGATTCGTGCAGATCTTAACAAAACAGTCTTTTCCCAAAAAAGCCT
GTGTCGTGGGAACAAAAAATGTTAGAACAAAACCAAGAGCTTCTAAACCAATAGCAAGGAATGG
AGATTCAAAAGGAGCAAGGAATTCTGGGAAGAAGTCTAAAGACTGCAGAGCAGCCCCTTCTGAA
GGCAGCGCTGGTAGTAGTGAGCTCCTAGTTGAAATGGTGCCATCCAGGAGAATCTCATCAGGGA
AAGCAGGTGTAGTTGAGGAAAATGTTAGTTTTGGTGTAGCTCAGAATCCTGAAAATCAGAACAA
ACAGCTAGGGGGCTTAGTAAGCTCAGACGGTCTTTTAAGTAAATCAGAACCCACTAAAAATGTC
CTCCAGACAGCTCATGTCAGTATCAGTACCACCTCAAGGCCGAGATCTGAGCGAAACCTTCTAA
TGTTGGGTAATAGCTTTCGCAGGCGAAGTGGCGCTTTTACTTTAAAGGGCCAGGCCAAGAAAAG
GTTTAATCTTCTAGGAATTAATAAAAGGGGAACAAATGAAACTCAGAGGCTATATGTGAAACAC
TTGAGAACACAAATGAAAGCAAATGCCCAGCCCGTGCTGGAGCAGATGCAGATGGGCAAAGATG
TTCAGAGTCTGTGTGTGACTACCTCAGACAACCCAGAAGTGATGCAGGACAAAACAGCCTCCGG
ACTGTCAGGCTTCACACGCCTGGGCTCCCTCGAAGTCAAGCCAGCTGACCACCAGCTCTCTGTG
CAGTGTCCCTGTACAGAGTGTGGCCAGATAACTGCAAATAAGACAGACTTGGATATTCATGTTC
AAAAGTGCCATGTAAGAGAGGTGCAGTTTCATTGTCAGACTTGTGACTTTTCTAGTCCATCAAG
GAGAGACTTGGAGGAACACTTGCACAGCAATCAGCATCAGCAAACGACACCTGTCCTCAGCTGT
CAGTGTTGTCCCTTTATTTCCTTGAGTGAAACGAGTCTTAGAGTTCATATGAAGGAAAAGCACG
GCATGGGCTTTTTCTGCACCTCTTGTAATCTGTTCTTGTCCGAGAGAGATGTAGAAGAACACAG
AGCAACTGAGGCACATAATAGCTTAGTGGTTCAGCCAAAAACCGCTTCATCATTGAGTAGGGAT
TCTGTTTTACCTTTAAGTACTTTAGAATCCGACAACATGGCTGATTCTAGAGAAGACTCAGGGA
AAGCATCTCAGGAAGAACCTGCTGAGTCCAGGGCAAGCCATGGAACTGAGGCAAGGCATTCAAG
TAAACCTCAGTTTCAGTGTAAGAAGTGTTTTTATAAAACAAGGTCTTCCACCGTCCTTACGAGA
CACATAAAGCTTCGGCATGGTCAGGACTATCACTTTCTTTGTAAAGCATGTAATCTTTATTCAT
TGAGCAAAGAAGGGATGGAGAAGCACATTAAAAGAAGCAAACATCTTGAAAATGCTAAGAAAAA
CAATATTGGTCTAAGTTTTGAAGAGTGTATTGAAAGAGTATGTATAGGTGCAAATGATAAAAAG
GAAGAGTCCAATGTTTCTGGAAGTGGAAGGCCCGAAGGCCATATTGGTGTGCGATTACAGGAGC
ATTCCCATTGTGAACAGAGTATGCTAACACCTAAGGAACTGCCACAGTCTGGTGTCATCACCAA
AGAGGATGAATTAGGCTTAGCCAGTACTCCAAAGAGAGGGAGACCCAAAGGCAGCATTTCTCGG
ACTTGTTCACATTGTGGACTTTTGGCCTCTAGTATTACAAATTTGACTGTGCATATCAGGCGTA
AACACAGTCACCAGTATAGTTATTTGTGCAAAGTATGTAAGTATTACACTGTCACTAAAGGAGA
CATGGAACGTCATTGTGCCACCAAGAAACATAAAGGACGGGTGGAAATAGAAGCAAATGGGAAA
CACAGTTCAGATATAATTGTTGGCCCAGAAGGAGGTAATCTTGAAGCGTGTAAGAAGAGCACTC
TAGCACTGACTGTTTCTGATGAGCAGGCTAACAAGTCAGCTAAGTCAGACGCATCTACCTTAGA
CAAGCCAGTAGTCGGTAATGGAGACACAGGCGATGCTGACGCTGGGAGCGCATTGCAGTCTGTA
GATGGAGAAGTTAGCAGTCAGCTCGCTGATAAAAAGGGACAGATAGCTCTAGAGACAGAGGACC
TTCAACAGCACGATGATGCATGCTCTCAGAGAGATGTTGCAGGCTCAAGTGACAATAAATGTCT
ACACTGTGAGTTCAGTGCTCACTCTGCTGCTTCGCTAGAGTTGCATGTGAAAAGGAAGCATACC
AAAGAATTTGAGTTTTATTGCATGGCCTGTGATTACTATGCGGTGACTCGCAGAGAAATGACTA
GACATGCTGCCACAGAGAAGCATAAAATGAAAAGGCAGTCTTACCTCAGCTCTTCTAATGTGGA
AGCAGGTTCTTCAGAAATATCCAAGAGCATCACTATACCCGAGGAGGAGCATTCACAGAATTCG
GAGGAATTTCAAATAAGTCCACACCAATCATCTGGTACTCTCCAATCTAGACATCCTGCAGATT
GTTCTATTTTATATGATAATACTAATTTAGACATGTCTAAAGTACTCTGTGCTCCTGATTCAGT
GGCAGTTGTGGCTGAGCAAGAATCTAATTTTAATGAAGATCATTCCTTTTGTGAGACCTTGCAC
CAGCCCCTCGCTAAGGACAGAAGTATAAAACCCAGGGAGATAGTGTCCCTTAACACTCCCTCTA
ACCGCAGCTCCCCAGGCTGTCTTCAAAGTGGAAACCTAGCTAGCTCTGCTGTGGACTCTGAGAC
TGCAAAGAGAAACCACAACCTGTTGGATGATGTTGGTGACACAAGCGCACACTGTGAAGATGAG
GGAGGCAGCTTGGATGGTAGTGAAGAAAAAGTTCTTGACAAGTCCCCCTGCCCTGGAGATCTAG
ATGGGGGCCATTCAGCTGAATCCATTTCCCCTGTGGTGGTGAAAATACCAAGAGAACAGCTGGA
CCTGGATGGTGGTGGCCAGAGCAAAGTTGGGTGCGAACAGACTTCAGAAGATTTAAAAGATGTG
CAAGCAAACTCTAATCTTGAGAGTAAGGAAATTCTGATGAACTCACAACATGAACCTGAAGTCA
TTTTGGAAGAGGATGCCCCAGCCTCTATTGGCACAGCTGAAAATAATGATGCTTATGAAACTAT
CATAAGTATTGACGACAAAGGGCAAACTATGTACAGTTTTGGCAGGTTTGATTCTTCCATAATT
AGAATAAAAACTGAAGATGGTGAATTGGTAGAACAGCCAGAGGAGGGTCTGATGGTGACAGGGG
GTAAAGTTAGTGAGTTGCCCCTGAAAGACTGTGCTCAGGGATTGAAGAAGAAGAAAGTTGAAGG
CAGTTCTTTTGGTGAGTCCACACGAATCCGATGTGATGATTGTGGCTTCTTAGCAGATGGACTG
AGTGGCCTGAATGTTCATATAGCCATGAAGCATCCCACAAAGGAGAAGCACTTTCATTGTTTAT
TATGTGGAAAATCATTCTACACGGAGAGCAACCTTCACCAGCATTTGGCTAGTGCTGGTCATAT
GAGAAATGAACAGGCCAGTGTAGAAGAGCTTCCAGAGGGTGGGGCCACCTTCAAATGTGTCAAG
TGTACAGAGCCCTTTGATTCCGAACAGAACTTATTTCTGCATATTAAAGGGCAGCATGAGGAAT
TGCTACGGGAGGTAAATAAGTACATAGTGGAAGACACGGAGCAGATCAATCGGGAGAGAGAGGA
AAACCAGGGGAATGTCTGCAAGTATTGTGGGAAGATGTGTCGGAGTAGCAATTCCATGGCCTTT
CTGGCCCACATTCGGACTCATACAGGATCAAAACCATTCAAGTGCAAGATATGCCATTTTGCAA
CAGCTCAGCTTGGAGATGCCAGAAACCATGTGAAAAGGCACCTTGGGATGAGGGAGTACAAGTG
TCACGTCTGTGGGGTTGCTTTTGTGATGAAGAAACACTTGAATACTCATCTGCTAGGCAAGCAT
GGAGTTGGCACCCCAAAAGAAAGGAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGA
AATGGGCCTTGAACAACCATGTGAAGCTGCACACAGGAGAAAAGCCGTTTAAATGCACATGGCC
CACGTGTCACTACTCGTTCCTCACGGCCTCAGCGATGAAAGACCACTACAGGACACACACAGGC
GAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCTGGTGGGACCCGGCATGCCCTCACCAAGC
ACCGTCGGCAGCATACAGGGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAAC
CCAGTCACACTTGACTCGGCATAAGCGTGTGCACACTGGAGAGAAGCCATACAGGTGCCCTTGG
TGTGACTACAGGTCAAACTGTGCTGAGAATATCCGCAAACACATTTTACACACCGGCAAACATG
AAGGCGTCAAGATGTACAACTGCCCAAAGTGTGACTATGGGACGAATGTCCCCGTGGAATTCCG
GAACCACTTGAAGGAGCAGCATCCTGACATTGAGAACCCTGACCTCGCATACTTGCATGCTGGT
AAACAGGCAGAGCTGCCATCCGATGTGCAGGGCATCGTGTCCAAGTCCTATGAGTGCCGCCTGA
AAGGACAAGGAGCCACCTTTGTGGAAACAGACAGCCCCTTCACTGCAGCCACCCTGGCAGAGGA
GTCACCTGTCAAGGAGAAGTCCCTGAGGAGCAGCAAGAGACAGGCTTCCTCCCCCGAGCAGGTC
CAGCAGGTCATCATCATCCAGGGCTATGATGGGGAGTTTGCCCTGGATGCCTCTGTGGAAGAGA
CTGCTGCGGCCACACTGCAGACACTGGCAATGGCTGGCCAAGTGGCCAGGGTGGTACACATCAC
AGAACATGGGCAGGTCATTGCCACAAGTCAAAACGGGTCCCATGTTGGCAGTGTGGTACCTGGA
CCCATCCTCCCCGAGCAGTTGGCAGATGGAGCCACCCAGGTGGTTGTCATGGGGGGTTCCATGG
AAACTCACAGTGTGGATGAGGCCCTCAGTCCAGGTGCCGCTGTCATACAGCAGGTCACCAAGCA
GGAGCTCTTAAGTCTCTCTGAGGCTGCAGTCCCTCCGTCTGACAACTCCTCAGCCTTAGATGCA
CTGCTGTGTGCCGTCACTGAGTTGGGAGAGGTGGAGGGCAGAGCGGGGCATGAGGACAAAGGTA
GGCCAGGCCACAAGGATGTGCTGATCCAGCTGCCCAGCCAAGAAGAAGCCCACGATCATGCCAA
GATGGAGGCCACAGAGACTCAGCTGTTCCAAGATGGTCAGGAGAGTCCAGCAGCCATGGAAGTA
CTGACCCAGGTTGTCCGTCCCTCAGCCATCATCACATCTCAGGAACGAGCCCAGGTAGCCTTCA
AGAAGATGGTTCAGGGTGTCCTCCAGTTTGCTGTTTGTGACACAGCTGCAGCCAGCCAGCTGAT
CAAGGATGGCGTTACCCAAGTCATTGTGAATGAGGAGGGTGCCGTCCACATGGTGGCCGGAGAA
GGCTCCCAGTTCATCATGCAGGAGGCTGAGACCCATGGCCTGCGGGTGCCAGCTGAGCATATGG
ACCTGGTAGAGTCAGAAGGAGAGATCTCTCAGATCATTGTAACAGAAGAGCTGGTTCAAGCCAT
GGTCCGGGAATCCAGTAGCAACTTCCCTGAGGGTGCCACTCACTACATTGTAACAGAGTTGCCT
CCCGGTGTACAGGAGGACACCGGGGTTTACTCCCACACTGTGATAGAGACAGCCAGCTCTCCAG
AGATCCTCCAGGCTGGGGCAGCACTCAGTGCTGAGGCTGTGGGTGCAAGTAGCACAGAACAGTT
GACAAGCATGGTCATCTACACCCAGGACGGCTCCCCAGCAGCCACAGTGATCCAGAGCCAAAGA
GAAAACAGTGAGCTCCAGGAAGCATGAGGCACAGGGTAGTGTGCCAAGATCCCCTTGGGCCAGC
ACAGAGGTCACTGAACTTTGTCATGTTTACTTCAGAGTGTGCTGAACAAGCCCTTCAGGCACGG
CTAACATTGGCCACTAAAAGGCACCAAGGAGGGCAGAAAGCCAAGCCTACACCTAGGTTGCCCA
GCAGCCTAATAAGAGAGGGTAGGCTGGTCATTGGGCCCTCTGCTGATGGCTCACCCATCACGAA
CCACTGGTGAAAAGCACTTTTCCCTGGTTTTTCTCCCGTATAAGTTCCCTATTTAGTCATCAAA
AGATGGTGTCGCCTGCTGGGAAACAGGAAGCATCTCTGGCCTCAGCACCTGCTACGTATGGCTC
GAACAGCCCTGTCATCTCCTCCCACATTCGGTTAAAAATCGGAACTACCAAGATCACATCTTGA
AGCAGTGAACACATTGTTTTTTATTGTTATTTTAAGTTTCAGATAATGGTGTTCCCAGACCAAA
GGAAGCCTGTTAACTCATCTTATGTAGAAATTTCCTCTCTGCGAATTTTTAGGGGATTCCTTTG
TCATGACCACTCTGCACAAGAGAGACCTTTCTTCTGTGGTTTGAGAAAAGTCTTGAAATTTTTA
TTCAGTTACAGTCCACCTAGGTTGAAACAATTAATTCTCATTCTGAATTCATTTCATACCATAA
CGTCTGTACATGAAATACCCACTATGAAAAATATTATTCATTGCTTTTTAAACAAATATTTGTT
TCTATCAGTATCGTTTTTGCAGGATTTATTGTGACTTCTCAGAGTATGGGAAGGCTGACATTGA
ACATTGCAGTAGATGCCTCCCCCTTGCCCTGCCTCCCCCAGCACTGCCTGCTCCAGGGCCAATT
CACTGCAAGTGCAGGATGCAGGGTGATGTTCCGGTGATCTTTCTCGATTCCATTGCTCTGTTTG
TTTTGTTTCCAAAATTGTAAAATAGCCCCCATTCCTCAAAGGCAAAATTGTTCTTGTTGTTTTC
TTTGAAATAAAATTATAGTGTTAAACTAAA

hide sequence

RefSeq Acc Id:

XM_017601148 ⟹ XP_017456637

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	79,846,012 - 80,223,239 (-)	NCBI
mRatBN7.2	18	77,571,140 - 77,948,338 (-)	NCBI
Rnor_6.0	18	81,057,507 - 81,429,916 (-)	NCBI

Sequence:

show sequence

TTCAATCATAGTATAAAATAAGTGGAAAATGATATGTGTTAATTTAATTAGCTATCCTAATGAA
AAATAAAATCAATAATATTGATTTTAAGGCATTTTATTCAGGATAATTCCCTTCTTCTCCAAAA
CTTACTCCATTAATTTTGTACCATCGACATTTCCCTTTGCCATTAATCTTCAGACAACACAAAA
ATGACTGTGAGATAAGAAAGTTGATTGCCACCTGGAAGAGGAAGGCTTTCCATTGACAAAAGCC
TTAGGGTTGTGAGCCCCAGTTAAATTCGACTCTGACAGAAGAAGCGTCATCAGAGGCTGACTGA
GAATGGATTCGGAGAGCAGACATGAAAACGATGAGGACGGAAGTGTTAAGGGAGCAGATCCAAG
GAGTGTTCCGTCCTGTGATGGCAGCCGTGGGCCTGTGTCTGACGACAGAGCAAATGCCTCTGAG
AATTTTACGAGCAAAAGAATTTTTTCAGAATCATCCAACTCGGACAGCATTGCTATGGAGGAAG
ACAGAATTGAACGTGCTTCCAAACGACTGAGAACAGAGGCAGTGGAGTCCGAGACAAGAGAGCA
GGGTGCCTGTGGGTTGGGCACTGCAGAAGTTAATGTCCATTTGGCTGAAATGGAAAAGGAGGTC
TTTCCAGCAAACCACTCAGAAGAAGGCAGAGCGCTTCCCAATGTTTCCCCCTCGTCCTGTGATT
TTAGCACGTCCGATACTCTTCCTCTGAAAGTAGATGACGTGAAGAAGCCTGCTCAGGAAATGGT
TGCCCTTGATCCTGAAAGACACACCCCTTTTCCTCCAGAAGAAGTGAGCGTTAGCTGTAGCTTT
GGAAGTGTAGAGACAGGACTCAGGTGTGGTGTGTGTGGCTGTTCATTTTCCTCTTGCTCTGCTT
TGGAAAAGCATGTGGAATGTCATGTGGGACAGGGGAAGGACCGTTCCTGCTGCCATTGTAGCCA
CAGAGCAGAGAGCAGCTCGTCTCCTCATGTGCATGCCAAACATAGTCAAGGACCACAGAAAGTC
TTTTCCTGTGACCTCTGTGGCTTTCACTGTGCTGAAGAAAACCTGTTGGATGCACATTATCTTG
GCAAAACACACCTTCGTCGTCAGAACCTTGCTGCTCGTGGAGGATTCGTGCAGATCTTAACAAA
ACAGTCTTTTCCCAAAAAAGCCTGTGTCGTGGGAACAAAAAATGTTAGAACAAAACCAAGAGCT
TCTAAACCAATAGCAAGGAATGGAGATTCAAAAGGAGCAAGGAATTCTGGGAAGAAGTCTAAAG
ACTGCAGAGCAGCCCCTTCTGAAGGCAGCGCTGGTAGTAGTGAGCTCCTAGTTGAAATGGTGCC
ATCCAGGAGAATCTCATCAGGGAAAGCAGGTGTAGTTGAGGAAAATGTTAGTTTTGGTGTAGCT
CAGAATCCTGAAAATCAGAACAAACAGCTAGGGGGCTTAGTAAGCTCAGACGGTCTTTTAAGTA
AATCAGAACCCACTAAAAATGTCCTCCAGACAGCTCATGTCAGTATCAGTACCACCTCAAGGCC
GAGATCTGAGCGAAACCTTCTAATGTTGGGTAATAGCTTTCGCAGGCGAAGTGGCGCTTTTACT
TTAAAGGGCCAGGCCAAGAAAAGGTTTAATCTTCTAGGAATTAATAAAAGGGGAACAAATGAAA
CTCAGAGGCTATATGTGAAACACTTGAGAACACAAATGAAAGCAAATGCCCAGCCCGTGCTGGA
GCAGATGCAGATGGGCAAAGATGTTCAGAGTCTGTGTGTGACTACCTCAGACAACCCAGAAGTG
ATGCAGGACAAAACAGCCTCCGGACTGTCAGGCTTCACACGCCTGGGCTCCCTCGAAGTCAAGC
CAGCTGACCACCAGCTCTCTGTGCAGTGTCCCTGTACAGAGTGTGGCCAGATAACTGCAAATAA
GACAGACTTGGATATTCATGTTCAAAAGTGCCATGTAAGAGAGGTGCAGTTTCATTGTCAGACT
TGTGACTTTTCTAGTCCATCAAGGAGAGACTTGGAGGAACACTTGCACAGCAATCAGCATCAGC
AAACGACACCTGTCCTCAGCTGTCAGTGTTGTCCCTTTATTTCCTTGAGTGAAACGAGTCTTAG
AGTTCATATGAAGGAAAAGCACGGCATGGGCTTTTTCTGCACCTCTTGTAATCTGTTCTTGTCC
GAGAGAGATGTAGAAGAACACAGAGCAACTGAGGCACATAATAGCTTAGTGGTTCAGCCAAAAA
CCGCTTCATCATTGAGTAGGGATTCTGTTTTACCTTTAAGTACTTTAGAATCCGACAACATGGC
TGATTCTAGAGAAGACTCAGGGAAAGCATCTCAGGAAGAACCTGCTGAGTCCAGGGCAAGCCAT
GGAACTGAGGCAAGGCATTCAAGTAAACCTCAGTTTCAGTGTAAGAAGTGTTTTTATAAAACAA
GGTCTTCCACCGTCCTTACGAGACACATAAAGCTTCGGCATGGTCAGGACTATCACTTTCTTTG
TAAAGCATGTAATCTTTATTCATTGAGCAAAGAAGGGATGGAGAAGCACATTAAAAGAAGCAAA
CATCTTGAAAATGCTAAGAAAAACAATATTGGTCTAAGTTTTGAAGAGTGTATTGAAAGAGTAT
GTATAGGTGCAAATGATAAAAAGGAAGAGTCCAATGTTTCTGGAAGTGGAAGGCCCGAAGGCCA
TATTGGTGTGCGATTACAGGAGCATTCCCATTGTGAACAGAGTATGCTAACACCTAAGGAACTG
CCACAGTCTGGTGTCATCACCAAAGAGGATGAATTAGGCTTAGCCAGTACTCCAAAGAGAGGGA
GACCCAAAGGCAGCATTTCTCGGACTTGTTCACATTGTGGACTTTTGGCCTCTAGTATTACAAA
TTTGACTGTGCATATCAGGCGTAAACACAGTCACCAGTATAGTTATTTGTGCAAAGTATGTAAG
TATTACACTGTCACTAAAGGAGACATGGAACGTCATTGTGCCACCAAGAAACATAAAGGACGGG
TGGAAATAGAAGCAAATGGGAAACACAGTTCAGATATAATTGTTGGCCCAGAAGGAGGTAATCT
TGAAGCGTGTAAGAAGAGCACTCTAGCACTGACTGTTTCTGATGAGCAGGCTAACAAGTCAGCT
AAGTCAGACGCATCTACCTTAGACAAGCCAGTAGTCGGTAATGGAGACACAGGCGATGCTGACG
CTGGGAGCGCATTGCAGTCTGTAGATGGAGAAGTTAGCAGTCAGCTCGCTGATAAAAAGGGACA
GATAGCTCTAGAGACAGAGGACCTTCAACAGCACGATGATGCATGCTCTCAGAGAGATGTTGCA
GGCTCAAGTGACAATAAATGTCTACACTGTGAGTTCAGTGCTCACTCTGCTGCTTCGCTAGAGT
TGCATGTGAAAAGGAAGCATACCAAAGAATTTGAGTTTTATTGCATGGCCTGTGATTACTATGC
GGTGACTCGCAGAGAAATGACTAGACATGCTGCCACAGAGAAGCATAAAATGAAAAGGCAGTCT
TACCTCAGCTCTTCTAATGTGGAAGCAGGTTCTTCAGAAATATCCAAGAGCATCACTATACCCG
AGGAGGAGCATTCACAGAATTCGGAGGAATTTCAAATAAGTCCACACCAATCATCTGGTACTCT
CCAATCTAGACATCCTGCAGATTGTTCTATTTTATATGATAATACTAATTTAGACATGTCTAAA
GTACTCTGTGCTCCTGATTCAGTGGCAGTTGTGGCTGAGCAAGAATCTAATTTTAATGAAGATC
ATTCCTTTTGTGAGACCTTGCACCAGCCCCTCGCTAAGGACAGAAGTATAAAACCCAGGGAGAT
AGTGTCCCTTAACACTCCCTCTAACCGCAGCTCCCCAGGCTGTCTTCAAAGTGGAAACCTAGCT
AGCTCTGCTGTGGACTCTGAGACTGCAAAGAGAAACCACAACCTGTTGGATGATGTTGGTGACA
CAAGCGCACACTGTGAAGATGAGGGAGGCAGCTTGGATGGTAGTGAAGAAAAAGTTCTTGACAA
GTCCCCCTGCCCTGGAGATCTAGATGGGGGCCATTCAGCTGAATCCATTTCCCCTGTGGTGGTG
AAAATACCAAGAGAACAGCTGGACCTGGATGGTGGTGGCCAGAGCAAAGTTGGGTGCGAACAGA
CTTCAGAAGATTTAAAAGATGTGCAAGCAAACTCTAATCTTGAGAGTAAGGAAATTCTGATGAA
CTCACAACATGAACCTGAAGTCATTTTGGAAGAGGATGCCCCAGCCTCTATTGGCACAGCTGAA
AATAATGATGCTTATGAAACTATCATAAGTATTGACGACAAAGGGCAAACTATGTACAGTTTTG
GCAGGTTTGATTCTTCCATAATTAGAATAAAAACTGAAGATGGTGAATTGGTAGAACAGCCAGA
GGAGGGTCTGATGGTGACAGGGGGTAAAGTTAGTGAGTTGCCCCTGAAAGACTGTGCTCAGGGA
TTGAAGAAGAAGAAAGTTGAAGGCAGTTCTTTTGGTGAGTCCACACGAATCCGATGTGATGATT
GTGGCTTCTTAGCAGATGGACTGAGTGGCCTGAATGTTCATATAGCCATGAAGCATCCCACAAA
GGAGAAGCACTTTCATTGTTTATTATGTGGAAAATCATTCTACACGGAGAGCAACCTTCACCAG
CATTTGGCTAGTGCTGGTCATATGAGAAATGAACAGGCCAGTGTAGAAGAGCTTCCAGAGGGTG
GGGCCACCTTCAAATGTGTCAAGTGTACAGAGCCCTTTGATTCCGAACAGAACTTATTTCTGCA
TATTAAAGGGCAGCATGAGGAATTGCTACGGGAGGTAAATAAGTACATAGTGGAAGACACGGAG
CAGATCAATCGGGAGAGAGAGGAAAACCAGGGGAATGTCTGCAAGTATTGTGGGAAGATGTGTC
GGAGTAGCAATTCCATGGCCTTTCTGGCCCACATTCGGACTCATACAGGATCAAAACCATTCAA
GTGCAAGATATGCCATTTTGCAACAGCTCAGCTTGGAGATGCCAGAAACCATGTGAAAAGGCAC
CTTGGGATGAGGGAGTACAAGTGTCACGTCTGTGGGGTTGCTTTTGTGATGAAGAAACACTTGA
ATACTCATCTGCTAGGCAAGCATGGAGTTGGCACCCCAAAAGAAAGGAAATTTACATGCCACTT
ATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCATGTGAAGCTGCACACAGGAGAA
AAGCCGTTTAAATGCACATGGCCCACGTGTCACTACTCGTTCCTCACGGCCTCAGCGATGAAAG
ACCACTACAGGACACACACAGGCGAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCTGGTGG
GACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAGGGGAAAAGCCTTTCAAATGTGAT
GAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGGCATAAGCGTGTGCACACTGGAG
AGAAGCCATACAGGTGCCCTTGGTGTGACTACAGGTCAAACTGTGCTGAGAATATCCGCAAACA
CATTTTACACACCGGCAAACATGAAGGCGTCAAGATGTACAACTGCCCAAAGTGTGACTATGGG
ACGAATGTCCCCGTGGAATTCCGGAACCACTTGAAGGAGCAGCATCCTGACATTGAGAACCCTG
ACCTCGCATACTTGCATGCTGGTAAACAGGCAGAGCTGCCATCCGATGTGCAGGGCATCGTGTC
CAAGTCCTATGAGTGCCGCCTGAAAGGACAAGGAGCCACCTTTGTGGAAACAGACAGCCCCTTC
ACTGCAGCCACCCTGGCAGAGGAGTCACCTGTCAAGGAGAAGTCCCTGAGGAGCAGCAAGAGAC
AGGCTTCCTCCCCCGAGCAGGTCCAGCAGGTCATCATCATCCAGGGCTATGATGGGGAGTTTGC
CCTGGATGCCTCTGTGGAAGAGACTGCTGCGGCCACACTGCAGACACTGGCAATGGCTGGCCAA
GTGGCCAGGGTGGTACACATCACAGAACATGGGCAGGTCATTGCCACAAGTCAAAACGGGTCCC
ATGTTGGCAGTGTGGTACCTGGACCCATCCTCCCCGAGCAGTTGGCAGATGGAGCCACCCAGGT
GGTTGTCATGGGGGGTTCCATGGAAACTCACAGTGTGGATGAGGCCCTCAGTCCAGGTGCCGCT
GTCATACAGCAGGTCACCAAGCAGGAGCTCTTAAGTCTCTCTGAGGCTGCAGTCCCTCCGTCTG
ACAACTCCTCAGCCTTAGATGCACTGCTGTGTGCCGTCACTGAGTTGGGAGAGGTGGAGGGCAG
AGCGGGGCATGAGGACAAAGGTAGGCCAGGCCACAAGGATGTGCTGATCCAGCTGCCCAGCCAA
GAAGAAGCCCACGATCATGCCAAGATGGAGGCCACAGAGACTCAGCTGTTCCAAGATGGTCAGG
AGAGTCCAGCAGCCATGGAAGTACTGACCCAGGTTGTCCGTCCCTCAGCCATCATCACATCTCA
GGAACGAGCCCAGGTAGCCTTCAAGAAGATGGTTCAGGGTGTCCTCCAGTTTGCTGTTTGTGAC
ACAGCTGCAGCCAGCCAGCTGATCAAGGATGGCGTTACCCAAGTCATTGTGAATGAGGAGGGTG
CCGTCCACATGGTGGCCGGAGAAGGCTCCCAGTTCATCATGCAGGAGGCTGAGACCCATGGCCT
GCGGGTGCCAGCTGAGCATATGGACCTGGTAGAGTCAGAAGGAGAGATCTCTCAGATCATTGTA
ACAGAAGAGCTGGTTCAAGCCATGGTCCGGGAATCCAGTAGCAACTTCCCTGAGGGTGCCACTC
ACTACATTGTAACAGAGTTGCCTCCCGGTGTACAGGAGGACACCGGGGTTTACTCCCACACTGT
GATAGAGACAGCCAGCTCTCCAGAGATCCTCCAGGCTGGGGCAGCACTCAGTGCTGAGGCTGTG
GGTGCAAGTAGCACAGAACAGTTGACAAGCATGGTCATCTACACCCAGGACGGCTCCCCAGCAG
CCACAGTGATCCAGAGCCAAAGAGAAAACAGTGAGCTCCAGGAAGCATGAGGCACAGGGTAGTG
TGCCAAGATCCCCTTGGGCCAGCACAGAGGTCACTGAACTTTGTCATGTTTACTTCAGAGTGTG
CTGAACAAGCCCTTCAGGCACGGCTAACATTGGCCACTAAAAGGCACCAAGGAGGGCAGAAAGC
CAAGCCTACACCTAGGTTGCCCAGCAGCCTAATAAGAGAGGGTAGGCTGGTCATTGGGCCCTCT
GCTGATGGCTCACCCATCACGAACCACTGGTGAAAAGCACTTTTCCCTGGTTTTTCTCCCGTAT
AAGTTCCCTATTTAGTCATCAAAAGATGGTGTCGCCTGCTGGGAAACAGGAAGCATCTCTGGCC
TCAGCACCTGCTACGTATGGCTCGAACAGCCCTGTCATCTCCTCCCACATTCGGTTAAAAATCG
GAACTACCAAGATCACATCTTGAAGCAGTGAACACATTGTTTTTTATTGTTATTTTAAGTTTCA
GATAATGGTGTTCCCAGACCAAAGGAAGCCTGTTAACTCATCTTATGTAGAAATTTCCTCTCTG
CGAATTTTTAGGGGATTCCTTTGTCATGACCACTCTGCACAAGAGAGACCTTTCTTCTGTGGTT
TGAGAAAAGTCTTGAAATTTTTATTCAGTTACAGTCCACCTAGGTTGAAACAATTAATTCTCAT
TCTGAATTCATTTCATACCATAACGTCTGTACATGAAATACCCACTATGAAAAATATTATTCAT
TGCTTTTTAAACAAATATTTGTTTCTATCAGTATCGTTTTTGCAGGATTTATTGTGACTTCTCA
GAGTATGGGAAGGCTGACATTGAACATTGCAGTAGATGCCTCCCCCTTGCCCTGCCTCCCCCAG
CACTGCCTGCTCCAGGGCCAATTCACTGCAAGTGCAGGATGCAGGGTGATGTTCCGGTGATCTT
TCTCGATTCCATTGCTCTGTTTGTTTTGTTTCCAAAATTGTAAAATAGCCCCCATTCCTCAAAG
GCAAAATTGTTCTTGTTGTTTTCTTTGAAATAAAATTATAGTGTTAAACTAAA

hide sequence

RefSeq Acc Id:

XM_063277292 ⟹ XP_063133362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	79,998,336 - 80,245,177 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414593	(Get FASTA)	NCBI Sequence Viewer
	XP_008770443	(Get FASTA)	NCBI Sequence Viewer
	XP_017456637	(Get FASTA)	NCBI Sequence Viewer
	XP_063133362	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75190	(Get FASTA)	NCBI Sequence Viewer
	EDL75191	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063687
	ENSRNOP00000063687.3
	ENSRNOP00000107995.1
	ENSRNOP00000108460
	ENSRNOP00000108460.1

RefSeq Acc Id:

XP_008770443 ⟸ XM_008772221

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDSESRHENDEDGSVKGADPRSVPSCDGSRGPVSDDRANASENFTSKRIFSESSNSDSIAMEED
RIERASKRLRTEAVESETREQGACGLGTAEVNVHLAEMEKEVFPANHSEEGRALPNVSPSSCDF
STSDTLPLKVDDVKKPAQEMVALDPERHTPFPPEEVSVSCSFGSVETGLRCGVCGCSFSSCSAL
EKHVECHVGQGKDRSCCHCSHRAESSSSPHVHAKHSQGPQKVFSCDLCGFHCAEENLLDAHYLG
KTHLRRQNLAARGGFVQILTKQSFPKKACVVGTKNVRTKPRASKPIARNGDSKGARNSGKKSKD
CRAAPSEGSAGSSELLVEMVPSRRISSGKAGVVEENVSFGVAQNPENQNKQLGGLVSSDGLLSK
SEPTKNVLQTAHVSISTTSRPRSERNLLMLGNSFRRRSGAFTLKGQAKKRFNLLGINKRGTNET
QRLYVKHLRTQMKANAQPVLEQMQMGKDVQSLCVTTSDNPEVMQDKTASGLSGFTRLGSLEVKP
ADHQLSVQCPCTECGQITANKTDLDIHVQKCHVREVQFHCQTCDFSSPSRRDLEEHLHSNQHQQ
TTPVLSCQCCPFISLSETSLRVHMKEKHGMGFFCTSCNLFLSERDVEEHRATEAHNSLVVQPKT
ASSLSRDSVLPLSTLESDNMADSREDSGKASQEEPAESRASHGTEARHSSKPQFQCKKCFYKTR
SSTVLTRHIKLRHGQDYHFLCKACNLYSLSKEGMEKHIKRSKHLENAKKNNIGLSFEECIERVC
IGANDKKEESNVSGSGRPEGHIGVRLQEHSHCEQSMLTPKELPQSGVITKEDELGLASTPKRGR
PKGSISRTCSHCGLLASSITNLTVHIRRKHSHQYSYLCKVCKYYTVTKGDMERHCATKKHKGRV
EIEANGKHSSDIIVGPEGGNLEACKKSTLALTVSDEQANKSAKSDASTLDKPVVGNGDTGDADA
GSALQSVDGEVSSQLADKKGQIALETEDLQQHDDACSQRDVAGSSDNKCLHCEFSAHSAASLEL
HVKRKHTKEFEFYCMACDYYAVTRREMTRHAATEKHKMKRQSYLSSSNVEAGSSEISKSITIPE
EEHSQNSEEFQISPHQSSGTLQSRHPADCSILYDNTNLDMSKVLCAPDSVAVVAEQESNFNEDH
SFCETLHQPLAKDRSIKPREIVSLNTPSNRSSPGCLQSGNLASSAVDSETAKRNHNLLDDVGDT
SAHCEDEGGSLDGSEEKVLDKSPCPGDLDGGHSAESISPVVVKIPREQLDLDGGGQSKVGCEQT
SEDLKDVQANSNLESKEILMNSQHEPEVILEEDAPASIGTAENNDAYETIISIDDKGQTMYSFG
RFDSSIIRIKTEDGELVEQPEEGLMVTGGKVSELPLKDCAQGLKKKKVEGSSFGESTRIRCDDC
GFLADGLSGLNVHIAMKHPTKEKHFHCLLCGKSFYTESNLHQHLASAGHMRNEQASVEELPEGG
ATFKCVKCTEPFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQINREREENQGNVCKYCGKMCR
SSNSMAFLAHIRTHTGSKPFKCKICHFATAQLGDARNHVKRHLGMREYKCHVCGVAFVMKKHLN
THLLGKHGVGTPKERKFTCHLCDRSFTEKWALNNHVKLHTGEKPFKCTWPTCHYSFLTASAMKD
HYRTHTGEKSFLCDLCGFAGGTRHALTKHRRQHTGEKPFKCDECNFASTTQSHLTRHKRVHTGE
KPYRCPWCDYRSNCAENIRKHILHTGKHEGVKMYNCPKCDYGTNVPVEFRNHLKEQHPDIENPD
LAYLHAGKQAELPSDVQGIVSKSYECRLKGQGATFVETDSPFTAATLAEESPVKEKSLRSSKRQ
ASSPEQVQQVIIIQGYDGEFALDASVEETAAATLQTLAMAGQVARVVHITEHGQVIATSQNGSH
VGSVVPGPILPEQLADGATQVVVMGGSMETHSVDEALSPGAAVIQQVTKQELLSLSEAAVPPSD
NSSALDALLCAVTELGEVEGRAGHEDKGRPGHKDVLIQLPSQEEAHDHAKMEATETQLFQDGQE
SPAAMEVLTQVVRPSAIITSQERAQVAFKKMVQGVLQFAVCDTAAASQLIKDGVTQVIVNEEGA
VHMVAGEGSQFIMQEAETHGLRVPAEHMDLVESEGEISQIIVTEELVQAMVRESSSNFPEGATH
YIVTELPPGVQEDTGVYSHTVIETASSPEILQAGAALSAEAVGASSTEQLTSMVIYTQDGSPAA
TVIQSQRENSELQEA

hide sequence

RefSeq Acc Id:

XP_017456637 ⟸ XM_017601148

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDSESRHENDEDGSVKGADPRSVPSCDGSRGPVSDDRANASENFTSKRIFSESSNSDSIAMEED
RIERASKRLRTEAVESETREQGACGLGTAEVNVHLAEMEKEVFPANHSEEGRALPNVSPSSCDF
STSDTLPLKVDDVKKPAQEMVALDPERHTPFPPEEVSVSCSFGSVETGLRCGVCGCSFSSCSAL
EKHVECHVGQGKDRSCCHCSHRAESSSSPHVHAKHSQGPQKVFSCDLCGFHCAEENLLDAHYLG
KTHLRRQNLAARGGFVQILTKQSFPKKACVVGTKNVRTKPRASKPIARNGDSKGARNSGKKSKD
CRAAPSEGSAGSSELLVEMVPSRRISSGKAGVVEENVSFGVAQNPENQNKQLGGLVSSDGLLSK
SEPTKNVLQTAHVSISTTSRPRSERNLLMLGNSFRRRSGAFTLKGQAKKRFNLLGINKRGTNET
QRLYVKHLRTQMKANAQPVLEQMQMGKDVQSLCVTTSDNPEVMQDKTASGLSGFTRLGSLEVKP
ADHQLSVQCPCTECGQITANKTDLDIHVQKCHVREVQFHCQTCDFSSPSRRDLEEHLHSNQHQQ
TTPVLSCQCCPFISLSETSLRVHMKEKHGMGFFCTSCNLFLSERDVEEHRATEAHNSLVVQPKT
ASSLSRDSVLPLSTLESDNMADSREDSGKASQEEPAESRASHGTEARHSSKPQFQCKKCFYKTR
SSTVLTRHIKLRHGQDYHFLCKACNLYSLSKEGMEKHIKRSKHLENAKKNNIGLSFEECIERVC
IGANDKKEESNVSGSGRPEGHIGVRLQEHSHCEQSMLTPKELPQSGVITKEDELGLASTPKRGR
PKGSISRTCSHCGLLASSITNLTVHIRRKHSHQYSYLCKVCKYYTVTKGDMERHCATKKHKGRV
EIEANGKHSSDIIVGPEGGNLEACKKSTLALTVSDEQANKSAKSDASTLDKPVVGNGDTGDADA
GSALQSVDGEVSSQLADKKGQIALETEDLQQHDDACSQRDVAGSSDNKCLHCEFSAHSAASLEL
HVKRKHTKEFEFYCMACDYYAVTRREMTRHAATEKHKMKRQSYLSSSNVEAGSSEISKSITIPE
EEHSQNSEEFQISPHQSSGTLQSRHPADCSILYDNTNLDMSKVLCAPDSVAVVAEQESNFNEDH
SFCETLHQPLAKDRSIKPREIVSLNTPSNRSSPGCLQSGNLASSAVDSETAKRNHNLLDDVGDT
SAHCEDEGGSLDGSEEKVLDKSPCPGDLDGGHSAESISPVVVKIPREQLDLDGGGQSKVGCEQT
SEDLKDVQANSNLESKEILMNSQHEPEVILEEDAPASIGTAENNDAYETIISIDDKGQTMYSFG
RFDSSIIRIKTEDGELVEQPEEGLMVTGGKVSELPLKDCAQGLKKKKVEGSSFGESTRIRCDDC
GFLADGLSGLNVHIAMKHPTKEKHFHCLLCGKSFYTESNLHQHLASAGHMRNEQASVEELPEGG
ATFKCVKCTEPFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQINREREENQGNVCKYCGKMCR
SSNSMAFLAHIRTHTGSKPFKCKICHFATAQLGDARNHVKRHLGMREYKCHVCGVAFVMKKHLN
THLLGKHGVGTPKERKFTCHLCDRSFTEKWALNNHVKLHTGEKPFKCTWPTCHYSFLTASAMKD
HYRTHTGEKSFLCDLCGFAGGTRHALTKHRRQHTGEKPFKCDECNFASTTQSHLTRHKRVHTGE
KPYRCPWCDYRSNCAENIRKHILHTGKHEGVKMYNCPKCDYGTNVPVEFRNHLKEQHPDIENPD
LAYLHAGKQAELPSDVQGIVSKSYECRLKGQGATFVETDSPFTAATLAEESPVKEKSLRSSKRQ
ASSPEQVQQVIIIQGYDGEFALDASVEETAAATLQTLAMAGQVARVVHITEHGQVIATSQNGSH
VGSVVPGPILPEQLADGATQVVVMGGSMETHSVDEALSPGAAVIQQVTKQELLSLSEAAVPPSD
NSSALDALLCAVTELGEVEGRAGHEDKGRPGHKDVLIQLPSQEEAHDHAKMEATETQLFQDGQE
SPAAMEVLTQVVRPSAIITSQERAQVAFKKMVQGVLQFAVCDTAAASQLIKDGVTQVIVNEEGA
VHMVAGEGSQFIMQEAETHGLRVPAEHMDLVESEGEISQIIVTEELVQAMVRESSSNFPEGATH
YIVTELPPGVQEDTGVYSHTVIETASSPEILQAGAALSAEAVGASSTEQLTSMVIYTQDGSPAA
TVIQSQRENSELQEA

hide sequence

Ensembl Acc Id:

ENSRNOP00000063687 ⟸ ENSRNOT00000065201

RefSeq Acc Id:	NP_001414593 ⟸ NM_001427664
- UniProtKB:	A6K5K9 (UniProtKB/TrEMBL), D3ZVE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133362 ⟸ XM_063277292
- Peptide Label:	isoform X2
- UniProtKB:	A6K5L0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000107995 ⟸ ENSRNOT00000157739

Ensembl Acc Id:

ENSRNOP00000108460 ⟸ ENSRNOT00000158785

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZVE0-F1-model_v2	AlphaFold	D3ZVE0	1-2244	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310645	AgrOrtholog
BioCyc Gene	G2FUF-6751	BioCyc
Ensembl Genes	ENSRNOG00000043357	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065201	ENTREZGENE
	ENSRNOT00000065201.5	UniProtKB/TrEMBL
	ENSRNOT00000157739.1	UniProtKB/TrEMBL
	ENSRNOT00000158785	ENTREZGENE
	ENSRNOT00000158785.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Zinc_finger/UBP_domain	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_U1	UniProtKB/TrEMBL
NCBI Gene	307213	ENTREZGENE
PANTHER	ENHANCER OF VARIEGATION 3-9-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 407	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp407	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000043357	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
	ZnF_U1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0ABK0LBG1_RAT	UniProtKB/TrEMBL
	A0ABK0M0F6_RAT	UniProtKB/TrEMBL
	A6K5K9	ENTREZGENE, UniProtKB/TrEMBL
	A6K5L0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZVE0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Zfp407	zinc finger protein 407	RGD1310645_predicted	similar to zinc finger protein 407 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310645_predicted	similar to zinc finger protein 407 (predicted)	LOC307213_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307213_predicted	similar to zinc finger protein 407 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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