Nudcd1 (NudC domain containing 1) - Rat Genome Database

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Gene: Nudcd1 (NudC domain containing 1) Rattus norvegicus
Analyze
Symbol: Nudcd1
Name: NudC domain containing 1
RGD ID: 1310624
Description: Predicted to be located in cytoplasm and nucleus. Orthologous to human NUDCD1 (NudC domain containing 1); INTERACTS WITH (+)-schisandrin B; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362906; nudC domain-containing protein 1; RGD1310624; similar to chronic myelogenous leukemia tumor antigen 66
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,436,035 - 77,480,651 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl777,436,036 - 77,480,575 (-)EnsemblGRCr8
mRatBN7.2775,550,650 - 75,595,976 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,550,346 - 75,595,900 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx777,395,980 - 77,440,519 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,598,471 - 79,643,010 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,475,982 - 79,520,489 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,302,778 - 83,348,534 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,301,941 - 83,348,487 (-)Ensemblrn6Rnor6.0
Rnor_5.0783,316,885 - 83,362,628 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4780,255,081 - 80,299,620 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera772,536,058 - 72,579,962 (-)NCBICelera
RGSC_v3.1780,276,134 - 80,320,284 (-)NCBI
Cytogenetic Map7q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Nudcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,436,035 - 77,480,651 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl777,436,036 - 77,480,575 (-)EnsemblGRCr8
mRatBN7.2775,550,650 - 75,595,976 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,550,346 - 75,595,900 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx777,395,980 - 77,440,519 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,598,471 - 79,643,010 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,475,982 - 79,520,489 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,302,778 - 83,348,534 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,301,941 - 83,348,487 (-)Ensemblrn6Rnor6.0
Rnor_5.0783,316,885 - 83,362,628 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4780,255,081 - 80,299,620 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera772,536,058 - 72,579,962 (-)NCBICelera
RGSC_v3.1780,276,134 - 80,320,284 (-)NCBI
Cytogenetic Map7q31NCBI
NUDCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,240,919 - 109,334,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,240,919 - 109,334,129 (-)Ensemblhg38GRCh38
GRCh378110,253,148 - 110,346,316 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,322,324 - 110,415,491 (-)NCBIBuild 36Build 36hg18NCBI36
Build 348110,322,324 - 110,415,491NCBI
Celera8106,440,850 - 106,534,040 (-)NCBICelera
Cytogenetic Map8q23.1NCBI
HuRef8105,575,211 - 105,668,355 (-)NCBIHuRef
CHM1_18110,293,071 - 110,386,598 (-)NCBICHM1_1
T2T-CHM13v2.08110,369,461 - 110,462,629 (-)NCBIT2T-CHM13v2.0
Nudcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,238,623 - 44,291,703 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,236,559 - 44,291,703 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381544,375,227 - 44,428,307 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,373,163 - 44,428,307 (-)Ensemblmm10GRCm38
MGSCv371544,206,773 - 44,259,853 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361544,205,305 - 44,257,962 (-)NCBIMGSCv36mm8
Celera1544,831,733 - 44,891,316 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Nudcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,686,296 - 16,750,427 (-)Ensembl
ChiLan1.0NW_00495541716,688,629 - 16,750,427 (-)NCBIChiLan1.0ChiLan1.0
NUDCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,619,208 - 126,710,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,140,805 - 102,231,956 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08105,893,784 - 105,984,995 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,038,659 - 108,129,797 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,038,659 - 108,129,797 (-)EnsemblpanPan2panpan1.1
NUDCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1139,815,394 - 9,895,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl139,815,957 - 9,895,359 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha139,799,805 - 9,886,375 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01310,096,853 - 10,177,290 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,096,853 - 10,177,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1139,838,631 - 9,918,869 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0139,955,853 - 10,035,820 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,045,303 - 10,125,384 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nudcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530328,223,653 - 28,283,414 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,649,742 - 35,711,985 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,649,752 - 35,709,569 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl428,203,743 - 28,331,531 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1428,203,716 - 28,319,944 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,675,395 - 30,748,179 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUDCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18103,952,873 - 104,044,592 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8103,951,207 - 104,044,468 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603936,531,352 - 36,623,030 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nudcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,350,120 - 8,423,418 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247638,349,713 - 8,423,540 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nudcd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11218,818,177 - 218,863,280 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nudcd1
463 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:138
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000006685
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
AA801046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2775,550,786 - 75,550,943 (+)MAPPERmRatBN7.2
Rnor_6.0783,302,915 - 83,303,071NCBIRnor6.0
Rnor_5.0783,317,022 - 83,317,178UniSTSRnor5.0
RGSC_v3.4780,254,503 - 80,254,659UniSTSRGSC3.4
Celera772,535,480 - 72,535,636UniSTS
RH 3.4 Map7513.5UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC169014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006685   ⟹   ENSRNOP00000006685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,436,036 - 77,468,101 (-)Ensembl
mRatBN7.2 Ensembl775,550,346 - 75,595,859 (-)Ensembl
Rnor_6.0 Ensembl783,301,941 - 83,348,487 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102595   ⟹   ENSRNOP00000091595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,436,036 - 77,480,575 (-)Ensembl
mRatBN7.2 Ensembl775,551,406 - 75,595,900 (-)Ensembl
RefSeq Acc Id: NM_001130561   ⟹   NP_001124033
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,480,575 (-)NCBI
mRatBN7.2775,551,365 - 75,595,903 (-)NCBI
Rnor_6.0783,303,493 - 83,348,430 (-)NCBI
Rnor_5.0783,316,885 - 83,362,628 (-)NCBI
RGSC_v3.4780,255,081 - 80,299,620 (-)RGD
Celera772,536,058 - 72,579,962 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241614   ⟹   XP_006241676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,480,651 (-)NCBI
mRatBN7.2775,550,650 - 75,595,976 (-)NCBI
Rnor_6.0783,302,778 - 83,348,534 (-)NCBI
Rnor_5.0783,316,885 - 83,362,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079515   ⟹   XP_038935443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
mRatBN7.2775,550,650 - 75,581,222 (-)NCBI
RefSeq Acc Id: XM_063263837   ⟹   XP_063119907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,467,917 (-)NCBI
RefSeq Acc Id: XM_063263838   ⟹   XP_063119908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,467,917 (-)NCBI
RefSeq Acc Id: XM_063263840   ⟹   XP_063119910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
RefSeq Acc Id: XM_063263841   ⟹   XP_063119911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
RefSeq Acc Id: XM_063263842   ⟹   XP_063119912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,436,035 - 77,465,892 (-)NCBI
RefSeq Acc Id: NP_001124033   ⟸   NM_001130561
- UniProtKB: B5DFD1 (UniProtKB/TrEMBL),   F7F163 (UniProtKB/TrEMBL),   A0A9K3Y8F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241676   ⟸   XM_006241614
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000006685   ⟸   ENSRNOT00000006685
RefSeq Acc Id: XP_038935443   ⟸   XM_039079515
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000091595   ⟸   ENSRNOT00000102595
RefSeq Acc Id: XP_063119908   ⟸   XM_063263838
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119907   ⟸   XM_063263837
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119911   ⟸   XM_063263841
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119912   ⟸   XM_063263842
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119910   ⟸   XM_063263840
- Peptide Label: isoform X5
Protein Domains
CS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7F163-F1-model_v2 AlphaFold F7F163 1-579 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695317
Promoter ID:EPDNEW_R5842
Type:initiation region
Name:Nudcd1_1
Description:NudC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0783,348,435 - 83,348,495EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310624 AgrOrtholog
BioCyc Gene G2FUF-33481 BioCyc
Ensembl Genes ENSRNOG00000024929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006685 ENTREZGENE
  ENSRNOT00000006685.7 UniProtKB/TrEMBL
  ENSRNOT00000102595 ENTREZGENE
  ENSRNOT00000102595.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/TrEMBL
InterPro CS-like_domain UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
  NUDCD1 UniProtKB/TrEMBL
KEGG Report rno:362906 UniProtKB/TrEMBL
NCBI Gene 362906 ENTREZGENE
PANTHER NUDC DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR21664 UniProtKB/TrEMBL
Pfam PF04969 UniProtKB/TrEMBL
PhenoGen Nudcd1 PhenoGen
PROSITE PS51203 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024929 RatGTEx
Superfamily-SCOP HSP20_chap UniProtKB/TrEMBL
UniProt A0A8I6AGF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y8F7 ENTREZGENE, UniProtKB/TrEMBL
  B5DFD1 ENTREZGENE, UniProtKB/TrEMBL
  F7F163 ENTREZGENE
UniProt Secondary F7F163 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nudcd1  NudC domain containing 1   Nudcd1_predicted  NudC domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Nudcd1_predicted  NudC domain containing 1 (predicted)  RGD1310624_predicted  similar to chronic myelogenous leukemia tumor antigen 66 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310624_predicted  similar to chronic myelogenous leukemia tumor antigen 66 (predicted)  LOC362906_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362906_predicted  similar to chronic myelogenous leukemia tumor antigen 66 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL