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Gene: C9h2orf49 (similar to human chromosome 2 open reading frame 49) Rattus norvegicus

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Symbol:

C9h2orf49

Name:

similar to human chromosome 2 open reading frame 49

RGD ID:

1310553

Description:

Predicted to be involved in embryonic morphogenesis. Predicted to be located in nucleus. Predicted to be part of tRNA-splicing ligase complex. Orthologous to human C2orf49 (chromosome 2 open reading frame 49); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ashwin; LOC301374; MGC105902; RGD1310553; similar to expressed sequence AI597479

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	52,863,565 - 52,874,234 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	52,863,542 - 52,874,234 (+)	Ensembl				GRCr8
mRatBN7.2	9	45,371,396 - 45,382,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	45,371,430 - 45,382,120 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	53,866,060 - 53,876,719 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	58,988,859 - 58,999,518 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	57,269,302 - 57,279,971 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	49,903,085 - 49,913,754 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	49,903,085 - 49,913,744 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	49,573,659 - 49,584,328 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	42,302,028 - 42,312,697 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	43,089,365 - 43,100,034 (+)	NCBI		Celera
RGSC_v3.1	9	42,303,441 - 42,314,110 (+)	NCBI
Cytogenetic Map	9	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiomyopathy (ISO)

dilated cardiomyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

disulfiram (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

formaldehyde (ISO)

FR900359 (ISO)

hexadecanoic acid (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

ozone (ISO)

phenylmercury acetate (ISO)

quercitrin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

testosterone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryonic morphogenesis (IEA)

tRNA processing (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO,ISS)

tRNA-splicing ligase complex (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:21311021	PMID:24870230

Genomics

Comparative Map Data

C9h2orf49
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	52,863,565 - 52,874,234 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	52,863,542 - 52,874,234 (+)	Ensembl				GRCr8
mRatBN7.2	9	45,371,396 - 45,382,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	45,371,430 - 45,382,120 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	53,866,060 - 53,876,719 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	58,988,859 - 58,999,518 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	57,269,302 - 57,279,971 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	49,903,085 - 49,913,754 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	49,903,085 - 49,913,744 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	49,573,659 - 49,584,328 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	42,302,028 - 42,312,697 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	43,089,365 - 43,100,034 (+)	NCBI		Celera
RGSC_v3.1	9	42,303,441 - 42,314,110 (+)	NCBI
Cytogenetic Map	9	q22	NCBI

C2orf49
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	105,337,540 - 105,385,899 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	105,337,532 - 105,350,712 (+)	Ensembl			hg38	GRCh38
GRCh37	2	105,953,997 - 105,965,668 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	105,320,445 - 105,328,416 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	100,154,460 - 100,162,431 (+)	NCBI		Celera
Cytogenetic Map	2	q12.2	NCBI
HuRef	2	99,722,503 - 99,730,474 (+)	NCBI		HuRef
CHM1_1	2	105,958,321 - 105,966,292 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	105,798,730 - 105,846,677 (+)	NCBI		T2T-CHM13v2.0

AI597479
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	43,137,870 - 43,155,106 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	43,137,870 - 43,155,107 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	43,098,710 - 43,115,946 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	43,098,710 - 43,115,947 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	43,155,555 - 43,172,791 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	43,043,256 - 43,060,492 (+)	NCBI		MGSCv36	mm8
Celera	1	43,437,163 - 43,454,400 (+)	NCBI		Celera
Cytogenetic Map	1	B- C1.1	NCBI
cM Map	1	22.27	NCBI

LOC102026964
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	10,223,467 - 10,234,309 (+)	Ensembl
ChiLan1.0	NW_004955470	10,223,467 - 10,234,309 (+)	NCBI	ChiLan1.0	ChiLan1.0

C12H2orf49
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	22,357,968 - 22,380,553 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	22,360,080 - 22,383,322 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	96,469,934 - 96,492,745 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	106,422,944 - 106,445,660 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	106,422,944 - 106,445,634 (+)	Ensembl			panPan2	panpan1.1

C10H2orf49
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	38,077,162 - 38,089,899 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	38,080,267 - 38,089,850 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	38,003,434 - 38,015,103 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	38,934,229 - 38,945,916 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	38,934,231 - 38,945,854 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	38,658,842 - 38,670,508 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	38,938,155 - 38,949,836 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	39,130,029 - 39,141,715 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH2orf49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	87,232,379 - 87,252,777 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936764	665,524 - 675,556 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936764	656,431 - 675,591 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C3H2orf49
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	49,454,562 - 49,465,447 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	49,454,558 - 49,465,442 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C14H2orf49
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	8,970,846 - 8,982,525 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	8,971,076 - 8,978,610 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	176,690,799 - 176,703,947 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH2orf49
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	9,437,273 - 9,445,644 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	9,437,322 - 9,448,119 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C4H2orf49
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	119,250,078 - 119,260,833 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C9h2orf49
41 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	999
Count of miRNA genes:	335
Interacting mature miRNAs:	469
Transcripts:	ENSRNOT00000022601
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat

Markers in Region

AI597479

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	45,381,839 - 45,381,969 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	49,913,472 - 49,913,601	NCBI	Rnor6.0
Rnor_5.0	9	49,584,046 - 49,584,175	UniSTS	Rnor5.0
RGSC_v3.4	9	42,312,415 - 42,312,544	UniSTS	RGSC3.4
Celera	9	43,099,752 - 43,099,881	UniSTS
Cytogenetic Map	9	q22	UniSTS

RH134548

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	45,381,771 - 45,381,980 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	49,913,404 - 49,913,612	NCBI	Rnor6.0
Rnor_5.0	9	49,583,978 - 49,584,186	UniSTS	Rnor5.0
RGSC_v3.4	9	42,312,347 - 42,312,555	UniSTS	RGSC3.4
Celera	9	43,099,684 - 43,099,892	UniSTS
RH 3.4 Map	9	400.3	UniSTS
Cytogenetic Map	9	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022601 ⟹ ENSRNOP00000022601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	52,863,542 - 52,874,234 (+)	Ensembl
mRatBN7.2 Ensembl	9	45,371,430 - 45,382,120 (+)	Ensembl
Rnor_6.0 Ensembl	9	49,903,085 - 49,913,744 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103688 ⟹ ENSRNOP00000083982

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	45,372,516 - 45,382,120 (+)	Ensembl

RefSeq Acc Id:

NM_001008517 ⟹ NP_001008517

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	52,863,565 - 52,874,234 (+)	NCBI
mRatBN7.2	9	45,371,453 - 45,382,122 (+)	NCBI
Rnor_6.0	9	49,903,085 - 49,913,754 (+)	NCBI
Rnor_5.0	9	49,573,659 - 49,584,328 (+)	NCBI
RGSC_v3.4	9	42,302,028 - 42,312,697 (+)	RGD
Celera	9	43,089,365 - 43,100,034 (+)	RGD

Sequence:

show sequence

CTGGCGACAACCATGGCGGGGGATGTGGGCGGTCGCAGCTGCACGGACGCGGAGCTGCTGCTGC
ACCCTGAGCTGCTGTCCCAGGAATTCCTCCTCCTCACCCTGGAGCAGAAGAACATAGCTGTTGA
AAATGACGTAAGAGTAAACAAAGACAACCTTACTGACCTTTACGTCCAGCACGCCATTCCGTTG
CCTCAGAGGGATTTGCCAAAGAATCGATGGGGGAAGATGATGGAGAAGAAAAGAGAGCACCATG
AAGGGAAAAATGATACCAAAAGGGGTAGTGCTGTAGATGGATTAAGGAAAAGACCCCTCATTGT
GTTCGATGGGAGCTCAACAAGCACAAGCATCAAAGTGAAAAAGACAGAGAACGGAGCAGACGAC
CGGCTCAAGCCTCCTGCCCAGACAGGCTCCACCAGTGATAGCCTTCGGAAATCACCAAATTCCT
CTTCGAGGATTGCACCCCTAGTTTTGTATTCCAGTTTACCTATGAACAATAAAATGGAGCACAA
TAATAATGACACTAAACAGAACCATGACTTGACGCATAGGAAAAGTCCTTCGGGTCCAGTGAAG
TCACCGCCTCTCTCCCCTGTTGGAACTACTCCTGTGAAATTGAAACGGGCTGCTCCTAAGGAAG
AGGCAGAGGCCACAAATCACCTGAAGCCACCAGAAGCAAAGAGGAAGATACAGCATGTTACGTG
GCCATGAAGGGAAGCCTCCCAGATGTAAATAGAGCTGCAGCCGCAGTTTCAGATGAGTCCACAG
TATTTACAGAGATCCTGAACACTGAGGGGTTTCCTTGAGGTTTAAAATAGGTTTGGAAAAATGA
GTCTTTTCCTTCTCTCCCTCCCTCCATTTCTTCCCTTCCTTACAATGTCTTGACTTTCATGTCC
CAATTAGGGAAGAAATTTCTTTTTAAAATACAGCTTTGTACACATCCTCTGTAAAATTCTTTTT
CCAAGCAAAAGCAGTTAGCAGTTCACAGTATTGTAGTAAATATTGCCACCTGCATCTTGAAGGG
TTCGCCAAGAACAGTGTATTGATGGTGTTGATGGAAAAGCGTTCTGCTCTTCAGTTACGTGTGT
CACTTTGTCCCATGGAAAGCAAAAGGGAAGTCAGGGCTTGCCATTTCTCCTTCTCAGTGGCAAA
AGCTGCTTTGTCTGTAGAATGTTCCTGGCTTACAGGGGCCCTGTCTATTCTTGTCTTAAGCAGC
TTGAGGTCTCACTGTGAGCTCAGCTATTTCTTGTATGAACTTAAGCTTTTTAAAATGAGACTGA
CTTTAATGTCTTCAGGCTGGGTGATCATGTTAGAGGCTGTACTCCATGTCAGAAAACTTGGGAA
TGATGGGTCCTACAAGTCTAGACAGAAGAAAGTCCAGAACATGTGGCAGTGGTGGGGGTTGCTT
ATCAGTATGCTGTGGAGTAGGCAGTCGTCACTGTCGGGACACTGAGTTGGGATTCACTGTAGAG
TGCAGCAGAAAGTGGACTCCTTACTGAAGAGGGTCATGTGCTATAATACAGATTCCTGCAGGGA
TGTCCCGTGCAGGGGTACGTGGTGGTCTTTTTATTTTTGTGCAAATAGCATTATCCACGTGTAT
AATGCAGGCAAATGAGAAAATACTGTTTGCTTTAAGGTCGAGATTTCTAGTGTCTGCTTATTCC
TTTATATTTCTAAGAGCAAAAGATACTTCATACTTTTTCCATGTATAATCTTCAAATTGTTGGT
TTGTCTTGTTGGTATGCCATATGGTCATCTCCTTTCTTTGATTTGTTAAACAGCCATTTTAGTT
CATTTATCAGAATAGCCTTACAAAAAATAATTCAGCCTTGCAGGTAAGTACTGTTCTTAGGCAT
CAACCCTGTAGTTTTTAAGCGTTCTGCTTTCTTCCCCCCAGACTAAATTTGTACATGTAAGACA
AAGTTTATGATACTAAGTGTTGCATGAACTGTTGATTCTACAGTAATTTTTTAAATATATTGTT
ATCTGCAGGGTTGATAAGTTAATATTGTTGGAAGGAACTGTGCTCCTATATGTAATGGTCAAGG
TAGATTTTAAAAGTGCAGCTTTTAGAGTAGAAGAACACATTATATTTTATATTCAGTTGACCTC
TCTGCTTCCACCGGTGTTTCTCTCTTAAGGAGAGAGTTTACCGTTTGACAGTTTTAAGTCAGTG
GGAACTTATTTTAGTTACTCAGTGAAATTAATTTTTAATTTGTATGTTTAACTTACAGAGTAGG
TTGGTAATAACAGCTGAACTGTGTAACATTGTTGCTTCAAATTGAAGTTTATACTATGACCATC
CAGCATCTGCGCTCACATAGCAGCATATTGTTGAGCTGTCTTGAGTTTGAGAGGTGGAAAAGCA
TTGACCCATGCACTGTGTATTATGTAGTGCCTCCATCACAGAGCGCCATGCCTCCTGAAGGGAT
TGTAGAACTGGCTCCCTCCATGTGATGACGAAGCGTGCTGAGAGCTGTGAATCTGGGGCAGCAG
CTTTGGGAGTGTTGTTTTGAAGTAGTGTTTGAGTTTGGGCTCTAAGGACTCTATAGGGTAGTGG
ACAAGTCTGGAGTAAGTTTACTTAGTAGTGTATAGGGTTAGTATTGTTGCTTTGGATTCTGTAT
CCCAGTGCAAGCTATTATTCCTGGGTCGGGCAAATGAATGGCATTAGAGACGGTGGGATGCTCC
TGAGGTACAGAAGGCACCGCATCTACCATTGGCAAGTCCACCTTGTTCTTTTTTTCCTATTTTG
TATATCCTGGTCTCTTTCCCACTCTTCTTCCTCTCTTCTCTAGGTCTGAGCCTCAGACTTAGAT
TTGCAGATGGCATTGTGTCTATGACCTTACTCCATTCACTGAGGGTGAAGATGGTCTGACCCCA
AACCTCCTACATCCGAGGGGGTCATAGACCACTGTGTGGATCCTGCAGTCTGGAGTCCTGTAGC
ACCAGGACACTAAATTGCTTCCCAAAGGCTGTCATAGTTTTCCAGAGTAGCCTTATAATTTAGG
CAGCTGCCAGACACTTGGAAGAGTGGCTCGCTACTACCATAGGCTGTGTTTGCTGGTATTAAAA
TTCTTCAAAATTGAAACTTCCATTTGAAATTGTGTTTTGCTTGACTTAAGTTTGAGAGACAGTT
CTAAAACTGATGTAGAGACTCATTCAACAGCAATGACCTTTTACAAACTTACATTAAGTAAAAC
TGCCAGTAGATTAAATCATCCCCATACGGAAGAACTTTCTCTACTTACTACTGTGGAATTTGAG
CATTGTTGAGAGGCTACAATTGGTCGACATGTTTTTTAAGTGTGCTTTTCTTAAATGCTTGTGT
AAGTTTTGTAATTCAGTATAGAAAAGGTTGACCTTGTAATGTACATTTTTGTATGTATAGTCTT
TTAAGTAGCCTTGTCCTTATTTAAATAAACTGAATAAAACTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001008517	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86514	(Get FASTA)	NCBI Sequence Viewer
	EDL99149	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022601
	ENSRNOP00000022601.3
GenBank Protein	Q5RJT0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008517 ⟸ NM_001008517

- UniProtKB:

Q5RJT0 (UniProtKB/Swiss-Prot), A6INR1 (UniProtKB/TrEMBL), A0A8I5ZYG6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGDVGGRSCTDAELLLHPELLSQEFLLLTLEQKNIAVENDVRVNKDNLTDLYVQHAIPLPQRD
LPKNRWGKMMEKKREHHEGKNDTKRGSAVDGLRKRPLIVFDGSSTSTSIKVKKTENGADDRLKP
PAQTGSTSDSLRKSPNSSSRIAPLVLYSSLPMNNKMEHNNNDTKQNHDLTHRKSPSGPVKSPPL
SPVGTTPVKLKRAAPKEEAEATNHLKPPEAKRKIQHVTWP

hide sequence

Ensembl Acc Id:

ENSRNOP00000022601 ⟸ ENSRNOT00000022601

Ensembl Acc Id:

ENSRNOP00000083982 ⟸ ENSRNOT00000103688

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5RJT0-F1-model_v2	AlphaFold	Q5RJT0	1-232	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696639

Promoter ID:

EPDNEW_R7164

Type:

initiation region

Name:

RGD1310553_1

Description:

similar to expressed sequence AI597479

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	49,903,062 - 49,903,122	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310553	AgrOrtholog
BioCyc Gene	G2FUF-27673	BioCyc
Ensembl Genes	ENSRNOG00000016447	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022601	ENTREZGENE
	ENSRNOT00000022601.6	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134744	IMAGE-MGC_LOAD
InterPro	Ashwin	UniProtKB/Swiss-Prot
KEGG Report	rno:301374	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105902	IMAGE-MGC_LOAD
NCBI Gene	301374	ENTREZGENE
PANTHER	ASHWIN	UniProtKB/Swiss-Prot
	PTHR28359	UniProtKB/Swiss-Prot
Pfam	Ashwin	UniProtKB/Swiss-Prot
PhenoGen	C9h2orf49	PhenoGen
RatGTEx	ENSRNOG00000016447	RatGTEx
UniProt	A0A8I5ZYG6	ENTREZGENE
	A6INR1	ENTREZGENE, UniProtKB/TrEMBL
	ASHWN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C9h2orf49	similar to human chromosome 2 open reading frame 49	RGD1310553	similar to expressed sequence AI597479	Symbol and Name Changed	1299863	APPROVED
2005-12-06	RGD1310553	similar to expressed sequence AI597479	RGD1310553_predicted	similar to expressed sequence AI597479 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310553_predicted	similar to expressed sequence AI597479 (predicted)	LOC301374_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC301374_predicted	similar to expressed sequence AI597479 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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