Osbp2 (oxysterol binding protein 2) - Rat Genome Database

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Gene: Osbp2 (oxysterol binding protein 2) Rattus norvegicus
Analyze
Symbol: Osbp2
Name: oxysterol binding protein 2
RGD ID: 1310505
Description: Predicted to enable cholesterol binding activity. Predicted to be involved in lipid transport. Predicted to act upstream of or within spermatid development. Predicted to be located in acrosomal vesicle and apical dendrite. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP2 (oxysterol binding protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC108352785; LOC289738; LOC305475; oxysterol-binding protein 2; RGD1309479; similar to oxysterol binding protein like (3M348); uncharacterized LOC108352785
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,808,693 - 82,970,386 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1482,808,693 - 82,970,532 (-)EnsemblGRCr8
mRatBN7.21478,585,088 - 78,746,785 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,585,089 - 78,746,786 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1483,026,235 - 83,187,793 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,266,325 - 84,427,879 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,712,116 - 80,873,790 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,943,976 - 84,107,031 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,943,977 - 84,106,997 (-)Ensemblrn6Rnor6.0
Rnor_5.01484,628,869 - 84,790,722 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41484,350,465 - 84,511,727 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1477,497,341 - 77,658,805 (-)NCBICelera
RGSC_v3.11484,370,976 - 84,530,872 (-)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
amiodarone  (ISO)
ammonium hexachloroplatinate  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (EXP)
bromobenzene  (EXP)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hexamethylene diisocyanate  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
kojic acid  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-ethyl-N-nitrosourea  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Expression of oxysterol binding protein isoforms in opisthorchiasis-associated cholangiocarcinoma: a potential molecular marker for tumor metastasis. Loilome W, etal., Parasitol Int. 2012 Mar;61(1):136-9. doi: 10.1016/j.parint.2011.07.003. Epub 2011 Jul 8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17428193   PMID:24245814  


Genomics

Comparative Map Data
Osbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,808,693 - 82,970,386 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1482,808,693 - 82,970,532 (-)EnsemblGRCr8
mRatBN7.21478,585,088 - 78,746,785 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,585,089 - 78,746,786 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1483,026,235 - 83,187,793 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,266,325 - 84,427,879 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,712,116 - 80,873,790 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,943,976 - 84,107,031 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,943,977 - 84,106,997 (-)Ensemblrn6Rnor6.0
Rnor_5.01484,628,869 - 84,790,722 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41484,350,465 - 84,511,727 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1477,497,341 - 77,658,805 (-)NCBICelera
RGSC_v3.11484,370,976 - 84,530,872 (-)NCBI
Cytogenetic Map14q21NCBI
OSBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,693,782 - 30,907,813 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,693,782 - 30,907,824 (+)Ensemblhg38GRCh38
GRCh372231,089,769 - 31,303,800 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,420,793 - 29,633,811 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342229,415,418 - 29,628,361NCBI
Celera2214,890,919 - 15,103,949 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2214,053,259 - 14,266,343 (+)NCBIHuRef
CHM1_12231,050,352 - 31,263,683 (+)NCBICHM1_1
T2T-CHM13v2.02231,157,371 - 31,371,381 (+)NCBIT2T-CHM13v2.0
Osbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,653,731 - 3,814,000 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,653,731 - 3,813,903 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38113,703,731 - 3,863,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,703,731 - 3,863,903 (-)Ensemblmm10GRCm38
MGSCv37113,603,734 - 3,763,906 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36113,603,734 - 3,763,906 (-)NCBIMGSCv36mm8
Celera114,194,917 - 4,357,599 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.6NCBI
Osbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,928,207 - 5,110,999 (+)Ensembl
ChiLan1.0NW_0049554554,928,153 - 5,110,178 (+)NCBIChiLan1.0ChiLan1.0
OSBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22340,651,570 - 40,879,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,292,848 - 43,583,185 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02211,719,017 - 11,933,841 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,521,404 - 29,734,538 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,520,479 - 29,733,061 (+)EnsemblpanPan2panpan1.1
OSBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,742,191 - 23,938,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,739,648 - 23,936,562 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2623,596,775 - 23,808,901 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02624,110,309 - 24,320,764 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,144,156 - 24,320,760 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12623,811,711 - 24,024,089 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,074,345 - 24,286,254 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,134,926 - 24,347,108 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Osbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,686,109 - 116,863,212 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493675531,009 - 121,887 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493675531,113 - 120,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,551,516 - 47,737,997 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11447,558,088 - 47,737,994 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,722,089 - 50,849,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,576,331 - 13,817,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,762,503 - 13,798,702 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045112,303,238 - 112,545,443 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Osbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247477,097,558 - 7,358,692 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Osbp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11172,704,923 - 72,727,332 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Osbp2
1572 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:94
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000065501
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
D14Rat128  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01484,783,002 - 84,783,127NCBIRnor5.0
Rnor_5.01484,781,938 - 84,782,062NCBIRnor5.0
Rnor_5.01484,783,003 - 84,783,127NCBIRnor5.0
Rnor_5.01484,781,937 - 84,782,062NCBIRnor5.0
RGSC_v3.41484,504,081 - 84,504,204UniSTSRGSC3.4
RGSC_v3.41484,504,080 - 84,504,204RGDRGSC3.4
Celera1477,651,160 - 77,651,283UniSTS
RGSC_v3.11484,523,225 - 84,523,349RGD
SHRSP x BN Map1442.8UniSTS
SHRSP x BN Map1442.8RGD
Cytogenetic Map14q21UniSTS
D1Uia1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81482,863,913 - 82,864,064 (+)Marker Load Pipeline
mRatBN7.21478,640,309 - 78,640,460 (+)MAPPERmRatBN7.2
Rnor_6.01483,999,593 - 83,999,743NCBIRnor6.0
Rnor_5.01484,684,401 - 84,684,551UniSTSRnor5.0
RGSC_v3.41484,405,770 - 84,405,920RGDRGSC3.4
RGSC_v3.41484,405,770 - 84,405,920UniSTSRGSC3.4
Celera1477,552,483 - 77,552,633UniSTS
RGSC_v3.11484,424,915 - 84,425,065RGD
Cytogenetic Map14q21UniSTS
RH139238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21478,746,394 - 78,746,543 (+)MAPPERmRatBN7.2
Rnor_6.01484,106,650 - 84,106,798NCBIRnor6.0
Rnor_5.01484,790,375 - 84,790,523UniSTSRnor5.0
RGSC_v3.41484,511,380 - 84,511,528UniSTSRGSC3.4
Celera1477,658,458 - 77,658,606UniSTS
RH 3.4 Map14545.2UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 12 67 156 91 90 59 40 59 6 300 140 11 135 79 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000065501   ⟹   ENSRNOP00000060468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1482,808,693 - 82,970,368 (-)Ensembl
mRatBN7.2 Ensembl1478,585,089 - 78,746,786 (-)Ensembl
Rnor_6.0 Ensembl1483,943,977 - 84,106,997 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094308   ⟹   ENSRNOP00000093182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1478,585,089 - 78,746,786 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104902   ⟹   ENSRNOP00000079573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1482,808,693 - 82,970,532 (-)Ensembl
mRatBN7.2 Ensembl1478,585,089 - 78,746,786 (-)Ensembl
RefSeq Acc Id: NM_001107232   ⟹   NP_001100702
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,368 (-)NCBI
mRatBN7.21478,585,088 - 78,746,777 (-)NCBI
Rnor_6.01483,943,977 - 84,106,997 (-)NCBI
Rnor_5.01484,628,869 - 84,790,722 (-)NCBI
RGSC_v3.41484,350,465 - 84,511,727 (-)RGD
Celera1477,497,341 - 77,658,805 (-)RGD
Sequence:
RefSeq Acc Id: XM_039092007   ⟹   XP_038947935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,778 (-)NCBI
RefSeq Acc Id: XM_039092008   ⟹   XP_038947936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,777 (-)NCBI
RefSeq Acc Id: XM_039092009   ⟹   XP_038947937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,778 (-)NCBI
RefSeq Acc Id: XM_039092010   ⟹   XP_038947938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,778 (-)NCBI
RefSeq Acc Id: XM_039092011   ⟹   XP_038947939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,778 (-)NCBI
RefSeq Acc Id: XM_039092012   ⟹   XP_038947940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,777 (-)NCBI
RefSeq Acc Id: XM_039092013   ⟹   XP_038947941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,386 (-)NCBI
mRatBN7.21478,585,088 - 78,746,776 (-)NCBI
RefSeq Acc Id: XM_039092014   ⟹   XP_038947942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
mRatBN7.21478,585,088 - 78,746,777 (-)NCBI
RefSeq Acc Id: XM_039092016   ⟹   XP_038947944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,843,244 (-)NCBI
mRatBN7.21478,585,088 - 78,619,640 (-)NCBI
RefSeq Acc Id: XM_039092018   ⟹   XP_038947946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,866,703 (-)NCBI
mRatBN7.21478,585,088 - 78,643,113 (-)NCBI
RefSeq Acc Id: XM_039092019   ⟹   XP_038947947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,831,996 (-)NCBI
mRatBN7.21478,585,088 - 78,608,394 (-)NCBI
RefSeq Acc Id: XM_039092020   ⟹   XP_038947948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,831,996 (-)NCBI
mRatBN7.21478,585,088 - 78,608,394 (-)NCBI
RefSeq Acc Id: XM_039092021   ⟹   XP_038947949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,819,406 - 82,970,373 (-)NCBI
mRatBN7.21478,595,804 - 78,746,785 (-)NCBI
RefSeq Acc Id: XM_039092022   ⟹   XP_038947950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,045 (-)NCBI
mRatBN7.21478,585,088 - 78,598,528 (-)NCBI
RefSeq Acc Id: XM_039092023   ⟹   XP_038947951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,997 (-)NCBI
mRatBN7.21478,585,088 - 78,694,403 (-)NCBI
RefSeq Acc Id: XM_039092024   ⟹   XP_038947952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,831,996 (-)NCBI
mRatBN7.21478,585,088 - 78,608,394 (-)NCBI
RefSeq Acc Id: XM_039092025   ⟹   XP_038947953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,094 (-)NCBI
mRatBN7.21478,585,088 - 78,598,524 (-)NCBI
RefSeq Acc Id: XM_039092026   ⟹   XP_038947954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,045 (-)NCBI
mRatBN7.21478,585,088 - 78,598,526 (-)NCBI
RefSeq Acc Id: XM_039092027   ⟹   XP_038947955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,153 (-)NCBI
mRatBN7.21478,585,088 - 78,598,552 (-)NCBI
RefSeq Acc Id: XM_039092028   ⟹   XP_038947956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,337 (-)NCBI
mRatBN7.21478,585,088 - 78,598,742 (-)NCBI
RefSeq Acc Id: XM_039092029   ⟹   XP_038947957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,153 (-)NCBI
mRatBN7.21478,585,088 - 78,598,552 (-)NCBI
RefSeq Acc Id: XM_039092030   ⟹   XP_038947958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,153 (-)NCBI
mRatBN7.21478,585,088 - 78,598,552 (-)NCBI
RefSeq Acc Id: XM_039092031   ⟹   XP_038947959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,335 (-)NCBI
mRatBN7.21478,585,088 - 78,598,741 (-)NCBI
RefSeq Acc Id: XM_039092033   ⟹   XP_038947961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,046 (-)NCBI
mRatBN7.21478,585,088 - 78,598,447 (-)NCBI
RefSeq Acc Id: XM_039092034   ⟹   XP_038947962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,153 (-)NCBI
mRatBN7.21478,585,088 - 78,598,552 (-)NCBI
RefSeq Acc Id: XM_039092035   ⟹   XP_038947963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,822,331 (-)NCBI
mRatBN7.21478,585,088 - 78,598,738 (-)NCBI
RefSeq Acc Id: XM_063273188   ⟹   XP_063129258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,970,363 (-)NCBI
RefSeq Acc Id: XM_063273189   ⟹   XP_063129259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,938,978 (-)NCBI
RefSeq Acc Id: XM_063273190   ⟹   XP_063129260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,997 (-)NCBI
RefSeq Acc Id: XM_063273191   ⟹   XP_063129261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,969 (-)NCBI
RefSeq Acc Id: XM_063273192   ⟹   XP_063129262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,878,607 (-)NCBI
RefSeq Acc Id: XM_063273193   ⟹   XP_063129263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,873,297 (-)NCBI
RefSeq Acc Id: XM_063273194   ⟹   XP_063129264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,881,344 (-)NCBI
RefSeq Acc Id: XM_063273195   ⟹   XP_063129265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,885,686 (-)NCBI
RefSeq Acc Id: XM_063273196   ⟹   XP_063129266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,968 (-)NCBI
RefSeq Acc Id: XM_063273197   ⟹   XP_063129267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,918,007 (-)NCBI
RefSeq Acc Id: XM_063273198   ⟹   XP_063129268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,968 (-)NCBI
RefSeq Acc Id: XM_063273200   ⟹   XP_063129270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,968 (-)NCBI
RefSeq Acc Id: XM_063273201   ⟹   XP_063129271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,917,982 (-)NCBI
RefSeq Acc Id: XM_063273202   ⟹   XP_063129272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,891,851 (-)NCBI
RefSeq Acc Id: XM_063273203   ⟹   XP_063129273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,808,693 - 82,831,996 (-)NCBI
RefSeq Acc Id: XR_005492962
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,820,287 - 82,970,371 (-)NCBI
mRatBN7.21478,596,684 - 78,746,784 (-)NCBI
RefSeq Acc Id: XR_005492963
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,820,284 - 82,970,371 (-)NCBI
mRatBN7.21478,596,734 - 78,746,784 (-)NCBI
RefSeq Acc Id: XR_005492964
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,820,438 - 82,970,371 (-)NCBI
mRatBN7.21478,596,835 - 78,746,784 (-)NCBI
RefSeq Acc Id: XR_005492965
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,820,287 - 82,970,374 (-)NCBI
mRatBN7.21478,596,687 - 78,746,785 (-)NCBI
RefSeq Acc Id: XR_005492966
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,819,817 - 82,970,374 (-)NCBI
mRatBN7.21478,596,214 - 78,746,785 (-)NCBI
RefSeq Acc Id: XR_005492968
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,820,270 - 82,970,374 (-)NCBI
mRatBN7.21478,596,667 - 78,746,785 (-)NCBI
RefSeq Acc Id: XR_005492969
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,820,320 - 82,970,374 (-)NCBI
mRatBN7.21478,596,717 - 78,746,785 (-)NCBI
RefSeq Acc Id: XR_010057367
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,821,155 - 82,970,374 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100702 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947935 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947936 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947937 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947938 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947939 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947940 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947941 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947946 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947947 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947950 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947951 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947952 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947953 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947956 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947958 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947961 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947963 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129258 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129259 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129260 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129261 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129262 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129263 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129264 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129265 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129266 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129267 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129268 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129270 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129271 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129272 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129273 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM00177 (Get FASTA)   NCBI Sequence Viewer  
  EDM00193 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060468
  ENSRNOP00000060468.4
  ENSRNOP00000079573
  ENSRNOP00000079573.1
RefSeq Acc Id: NP_001100702   ⟸   NM_001107232
- UniProtKB: D3ZHG4 (UniProtKB/TrEMBL),   A6IKC8 (UniProtKB/TrEMBL),   A0A8I6AJ84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060468   ⟸   ENSRNOT00000065501
RefSeq Acc Id: XP_038947938   ⟸   XM_039092010
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947939   ⟸   XM_039092011
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947937   ⟸   XM_039092009
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947935   ⟸   XM_039092007
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947942   ⟸   XM_039092014
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947940   ⟸   XM_039092012
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947936   ⟸   XM_039092008
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947941   ⟸   XM_039092013
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZR95 (UniProtKB/TrEMBL),   A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947951   ⟸   XM_039092023
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038947946   ⟸   XM_039092018
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038947944   ⟸   XM_039092016
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038947952   ⟸   XM_039092024
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038947948   ⟸   XM_039092020
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038947947   ⟸   XM_039092019
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038947956   ⟸   XM_039092028
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038947959   ⟸   XM_039092031
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038947963   ⟸   XM_039092035
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038947962   ⟸   XM_039092034
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038947958   ⟸   XM_039092030
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038947957   ⟸   XM_039092029
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038947955   ⟸   XM_039092027
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038947950   ⟸   XM_039092022
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038947954   ⟸   XM_039092026
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038947953   ⟸   XM_039092025
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038947961   ⟸   XM_039092033
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038947949   ⟸   XM_039092021
- Peptide Label: isoform X22
Ensembl Acc Id: ENSRNOP00000093182   ⟸   ENSRNOT00000094308
Ensembl Acc Id: ENSRNOP00000079573   ⟸   ENSRNOT00000104902
RefSeq Acc Id: XP_063129258   ⟸   XM_063273188
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AJ84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129259   ⟸   XM_063273189
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063129267   ⟸   XM_063273197
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063129260   ⟸   XM_063273190
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063129271   ⟸   XM_063273201
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063129261   ⟸   XM_063273191
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063129270   ⟸   XM_063273200
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063129268   ⟸   XM_063273198
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063129266   ⟸   XM_063273196
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063129272   ⟸   XM_063273202
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063129265   ⟸   XM_063273195
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063129264   ⟸   XM_063273194
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063129262   ⟸   XM_063273192
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063129263   ⟸   XM_063273193
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063129273   ⟸   XM_063273203
- Peptide Label: isoform X27
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHG4-F1-model_v2 AlphaFold D3ZHG4 1-896 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699429
Promoter ID:EPDNEW_R9954
Type:single initiation site
Name:Osbp2_1
Description:oxysterol binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01484,107,032 - 84,107,092EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310505 AgrOrtholog
BioCyc Gene G2FUF-15215 BioCyc
Ensembl Genes ENSRNOG00000019645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065501 ENTREZGENE
  ENSRNOT00000065501.4 UniProtKB/TrEMBL
  ENSRNOT00000104902 ENTREZGENE
  ENSRNOT00000104902.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  2.40.160.120 UniProtKB/TrEMBL
InterPro OSBP_sf UniProtKB/TrEMBL
  Oxysterol-bd UniProtKB/TrEMBL
  Oxysterol-bd_CS UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
KEGG Report rno:305475 UniProtKB/TrEMBL
NCBI Gene 305475 ENTREZGENE
PANTHER OXYSTEROL-BINDING PROTEIN 2 UniProtKB/TrEMBL
  Oxysterol_bd UniProtKB/TrEMBL
Pfam Oxysterol_BP UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PhenoGen Osbp2 PhenoGen
PROSITE OSBP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019645 RatGTEx
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF144000 UniProtKB/TrEMBL
UniProt A0A8I5ZR95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJ84 ENTREZGENE
  A6IKC8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHG4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Osbp2  oxysterol binding protein 2  LOC108352785  uncharacterized LOC108352785  Data merged from RGD:11393903 737654 PROVISIONAL
2016-08-02 LOC108352785  uncharacterized LOC108352785      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-06-15 Osbp2  oxysterol binding protein 2   RGD1309479  similar to oxysterol binding protein like (3M348)   Data merged from RGD:1309479 1643240 APPROVED
2008-04-30 Osbp2  oxysterol binding protein 2   Osbp2_predicted  oxysterol binding protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 RGD1309479  similar to oxysterol binding protein like (3M348)   RGD1309479_predicted  similar to oxysterol binding protein like (3M348) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309479_predicted  similar to oxysterol binding protein like (3M348) (predicted)  LOC289738_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 Osbp2_predicted  oxysterol binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2005-01-12 LOC289738_predicted  similar to oxysterol binding protein like (3M348) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL