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Gene: Elk4 (ETS transcription factor ELK4) Rattus norvegicus

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Symbol:

Elk4

Name:

ETS transcription factor ELK4

RGD ID:

1310504

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in cell differentiation; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ELK4 (ETS transcription factor ELK4); PARTICIPATES IN mitogen activated protein kinase signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ELK4, ETS transcription factor; ELK4, ETS-domain protein (SRF accessory protein 1); ELK4, member of ETS oncogene family; ETS domain-containing protein Elk-4; LOC304786

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELK4 (ETS transcription factor ELK4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Elk4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elk4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELK4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELK4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elk4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELK4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELK4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elk4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Elk4 (ETS transcription factor ELK4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ELK4 (ETS transcription factor ELK4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elk4 (ETS transcription factor ELK4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elk4 (ETS transcription factor ELK4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lin-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	lin-1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	elk4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,004,145 - 46,027,206 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	46,004,182 - 46,027,199 (+)	Ensembl				GRCr8
mRatBN7.2	13	43,451,130 - 43,475,035 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,435,843 - 43,475,035 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	46,059,138 - 46,081,883 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,347,288 - 47,370,033 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,608,147 - 44,630,900 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,788,262 - 48,813,267 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,790,509 - 48,813,260 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,859,962 - 53,883,011 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,891,369 - 44,914,127 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	43,789,583 - 43,812,345 (+)	NCBI		Celera
RGSC_v3.1	13	44,911,558 - 44,919,627 (+)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chloroacetaldehyde (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

crotonaldehyde (ISO)

cyclosporin A (ISO)

dapsone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

Diisodecyl phthalate (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

geraniol (ISO)

glyphosate (ISO)

ibuprofen (ISO)

ifosfamide (ISO)

iron dichloride (ISO)

metformin (ISO)

methapyrilene (EXP)

methidathion (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (EXP)

PCB138 (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propiconazole (ISO)

quercetin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

tributylstannane (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

chromatin binding (IEA,ISO)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA,ISO)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitogen activated protein kinase signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11846562	PMID:12477932	PMID:20145255	PMID:22722849

Genomics

Comparative Map Data

Elk4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	46,004,145 - 46,027,206 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	46,004,182 - 46,027,199 (+)	Ensembl				GRCr8
mRatBN7.2	13	43,451,130 - 43,475,035 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,435,843 - 43,475,035 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	46,059,138 - 46,081,883 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,347,288 - 47,370,033 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,608,147 - 44,630,900 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,788,262 - 48,813,267 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,790,509 - 48,813,260 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,859,962 - 53,883,011 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,891,369 - 44,914,127 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	43,789,583 - 43,812,345 (+)	NCBI		Celera
RGSC_v3.1	13	44,911,558 - 44,919,627 (+)	NCBI
Cytogenetic Map	13	q13	NCBI

ELK4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	205,607,943 - 205,632,011 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	205,597,556 - 205,634,520 (-)	Ensembl			hg38	GRCh38
GRCh37	1	205,577,071 - 205,601,139 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	203,851,858 - 203,868,623 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	202,320,054 - 202,333,657	NCBI
Celera	1	178,721,418 - 178,738,288 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	176,742,986 - 176,767,339 (-)	NCBI		HuRef
CHM1_1	1	207,000,351 - 207,025,311 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	204,872,578 - 204,896,650 (-)	NCBI		T2T-CHM13v2.0

Elk4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,935,129 - 131,954,186 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,935,345 - 131,960,350 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	132,007,577 - 132,026,448 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	132,007,607 - 132,032,612 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	133,904,182 - 133,922,261 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,835,422 - 133,851,209 (+)	NCBI		MGSCv36	mm8
Celera	1	134,612,092 - 134,629,885 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.24	NCBI

Elk4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	41,325,921 - 41,334,359 (-)	Ensembl
ChiLan1.0	NW_004955406	41,325,921 - 41,333,503 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELK4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	43,738,208 - 43,767,262 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	43,703,533 - 43,732,591 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	181,216,587 - 181,242,023 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	185,509,937 - 185,518,447 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	185,509,937 - 185,518,452 (-)	Ensembl			panPan2	panpan1.1

ELK4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,069,829 - 2,085,381 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	2,078,008 - 2,125,069 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,162,966 - 2,185,149 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,066,704 - 2,088,917 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,072,417 - 2,089,114 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,061,957 - 2,083,106 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	2,453,513 - 2,475,688 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	2,653,737 - 2,675,907 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Elk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	69,565,015 - 69,572,341 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	6,757,223 - 6,815,712 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	6,805,305 - 6,814,702 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELK4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	66,297,338 - 66,323,168 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	66,293,038 - 66,316,239 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	72,564,240 - 72,581,905 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELK4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	23,714,591 - 23,731,330 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	23,714,708 - 23,729,925 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	24,411,585 - 24,435,164 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elk4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	5,604,183 - 5,617,319 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	5,603,815 - 5,620,856 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Elk4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	3,811,450 - 3,836,158 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Elk4
93 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1048
Count of miRNA genes:	344
Interacting mature miRNAs:	484
Transcripts:	ENSRNOT00000065094
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH142867

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,461,730 - 43,461,835 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,799,963 - 48,800,067	NCBI	Rnor6.0
Rnor_5.0	13	53,869,707 - 53,869,811	UniSTS	Rnor5.0
RGSC_v3.4	13	44,900,823 - 44,900,927	UniSTS	RGSC3.4
Celera	13	43,799,037 - 43,799,141	UniSTS
RH 3.4 Map	13	113.5	UniSTS
Cytogenetic Map	13	q13	UniSTS

RH131651

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,474,498 - 43,474,680 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,812,731 - 48,812,912	NCBI	Rnor6.0
Rnor_5.0	13	53,882,475 - 53,882,656	UniSTS	Rnor5.0
RGSC_v3.4	13	44,913,591 - 44,913,772	UniSTS	RGSC3.4
Celera	13	43,811,809 - 43,811,990	UniSTS
Cytogenetic Map	13	q13	UniSTS

RH139109

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,461,659 - 43,461,855 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,799,892 - 48,800,087	NCBI	Rnor6.0
Rnor_5.0	13	53,869,636 - 53,869,831	UniSTS	Rnor5.0
RGSC_v3.4	13	44,900,752 - 44,900,947	UniSTS	RGSC3.4
Celera	13	43,798,966 - 43,799,161	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065094 ⟹ ENSRNOP00000059567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	43,452,276 - 43,475,035 (+)	Ensembl
Rnor_6.0 Ensembl	13	48,790,509 - 48,813,260 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087504 ⟹ ENSRNOP00000074516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	48,790,767 - 48,804,922 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090233 ⟹ ENSRNOP00000070409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	48,790,951 - 48,805,286 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093870 ⟹ ENSRNOP00000096481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	43,435,843 - 43,475,035 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147160 ⟹ ENSRNOP00000105552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	46,004,182 - 46,027,199 (+)	Ensembl

RefSeq Acc Id:

NM_001107173 ⟹ NP_001100643

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,189 - 46,021,453 (+)	NCBI
mRatBN7.2	13	43,452,017 - 43,469,282 (+)	NCBI
Rnor_6.0	13	48,790,509 - 48,813,267 (+)	NCBI
Rnor_5.0	13	53,859,962 - 53,883,011 (+)	NCBI
RGSC_v3.4	13	44,891,369 - 44,914,127 (+)	RGD
Celera	13	43,789,583 - 43,812,345 (+)	RGD

Sequence:

show sequence

TAGCGTGAGGAGCAGTCGGTGACAGAGTCTAGCACCGCGTTTAAGGTCGAGAAGGATTCCTGTG
TCCTGCCTGTGCTGCCAATTTGTATGTAAACTACCCTGCTATGCTGCTTAACTATTTGGAGGAG
AAATACCAGTTGGACTAGGAACAAATTGTTCCTTCCACGTCAGTCAGCCTCCTGGCCACCCCAA
GATGCAAGTCTTGTCAGAAACACAATGGGCTCATTTATGTGTACTTTGAACTGGTGGTCTTCTA
AGAGAATGTGATGTAATAAGGTGTTAAGCCCATTGCTATGGACAGTGCCATTACTCTGTGGCAG
TTCCTTCTTCAGCTCCTGCAGGAGCCTCAGAATGAGCACGTGATCTGCTGGACCTCTAACAATG
GGGAGTTCAAGCTTCTGCAGGCGGAGGAGGTGGCTCGCCTGTGGGGGATCCGAAAGAACAAGCC
TAACATGAATTATGACAAACTCAGCCGAGCCCTGAGATACTACTACGTAAAGAACATCATTAAA
AAAGTGAATGGTCAGAAGTTTGTATACAAGTTTGTCTCCTATCCAGAGATTTTGAAAATGGATC
CACTGACGGTAGGCAGGATTGAGGGAGACTGTGAAACTTTAAATTCCATTGAAGCCAGCAGTTC
CAAAGATGCTGAGTGTGGAGGAAAGGAGAGGCCACCTCAGCCTGGAGCCAAGACATCCAGTCGC
AATGACTACATACACTCTGGTTTGTATTCTTCCTTTACTCTCAACTCTCTGAACACCTCCAATA
AGAAGCTTTTCAAGTCAATAAAGATAGAGAATCCAGCAGAAAAACTAGCAGAGAAGAAAGCTCA
GGAGCCAACCCCGTCCGTGATCAAATTCGTGACAACACCTGCCAAAAAGCCGCCCATGGAGCCT
GTCACTGTTGCCTTTTCAACAAGCCCTAGTGTTTCTCCATCTTCTGAAGAAACTATCCAAGCTT
TGGAGACTCTGGTCTCTCCCACACTACCTTCCCTGGAAGCCTCAGCCTCTGTATCCATCCTGGC
TACCACCTTTAACCCCACTCCTCCAGTTCCTTCCATACCCCTTCCTCTACAGGAGCCTCCCAGG
ACACCGTCTCCACCGCTGAGTTCTAACCCAGACATTGACACAGACATTGAATCAGTGGCTCCTC
AGCCCATGGAACGTCCAGAGAACTTGTCACTGGAGCCTAAAAATGAGGATTCAGCTTTGCCAGA
AAAGGACAAAACAAATAACTCATCAAGATCCAAGAAGCCAAAAGGGTTAGAACTGACGCCCGCC
CTTGTGGTCACAGGCAGTGACCCCAGCCCCTTGGGGATCTTAAGCCCGTCTCTCCCAACAGCGT
CGCTTACACCAGCACTCTTCTCACAGACACCCATCCTGCTGACGCCGAGCCCCTTGCTCTCCAG
CATCCACTTTTGGAGCACTCTCAGCCCGTTTGCTCCTCTGAGCCCAGCCAGACTGCAAGGTGCT
AATACGCTCTTCCAGTTCCCTTCTGTACTGAACAGTCATGGACCATTCACTCTGTCTGGCCTGG
ATGGACCTTCCACTCCGGGCCCGTTTTCTCCAGACCTGCAGAAGACATAACGAGTGCAGTTGTG
GACTAAGAGACTAAGGAACTAGGACATAGACATCAGCATGACTCAGTTCGAAATGAGGGGTAGT
TCTGCAGTGCTCATAATAGACCGTTGTGATTTTTCCCACTGCCTGTTGACAAGCCTTTTCAGGA
CTCTCAAAAGTTGGACTGTACAAAAAATGCCTTAATTGGAGTCCAAGCTCCACCTCACTTCTTT
TTTTTTAAAGGTGTTTTTTTTGTTGTTGTTGCCTTTTTTTCCTTTTTTCCTTTTTTTTTTTTTT
AAAGCTTTGTGCAAAAAACATTGGATAGTTGAGGTTCAGCAGCTGTGTTTCTCAAGAGTCACCG
AACAAAGTCACCAGCCCTGGATGTGAGGACCCACATCCAGGGGAGAAAGTGTGCTTAGAGCCTG
TTACTTAAAGGAATTCTTGTCCACTATGTGTGATGACCCACTTCTGCAGTCTCAGCACTTGGGA
AGCTGAGGTGGGAGAATACCAAGGGTGGAGGGCCAGCCTGCGCTATATATATTGTGAGGTTGTC
TCAAAAAGACAAAAATACGACTTAAATGAAACCAGCAGCATATTTTGTAGTGAGTGCGCTCTGT
TGAATGTCTAAGGGGAGCGGCTCATGAGCAGTGGGAGAAACCTTAGGAGGTCAGCCATGCTGAG
GATCTGTTTTGCCGTGAGCGCTGACATTACAGTTCTACAGAAGGGTGTCTTGTTTGCACTTACC
TGGGCAAATCTCTGCTATCCGTACCTGTGATCCTGTCTGAACCTGTCCCTAGGCCCCGAGCTGT
TTTAACACAAGACTTGGAAAGCTCAGTTTTAATGTGGGTTTTGGAACATTGGTTGAGACTAGGA
GATCCCACTGTGAGCACAGATCTCTGGTGTGTGCTTTGAGCAGTGTGGTTCTGTAGCCATGCAA
CACAGCATGCAAGTGGTGATTTTTCCTGAGAGGAGAGTTGTGGTTTGAAAATTGAATGTCACAA
GCAACCAAAAAGGTTCAGTGAAACACCCTGAGACAGGAGGTGGGGTGTTTCCAGCTAGAAGACA
CCCAGAGTGCCAGGCCCCTTTTCTTCTTGCCAGTTTCATCCCCTTACCATGCTGCTTTTAAATC
TAAGGTCAGAAGATGATGATGCGTTCAGGTGTTGTAATCAGGAAGATGAACTCCAAAGGGAAAC
TTCGGTTAGCTGGAGGTAGAGACGGGCTTACTGCTTTCCAAAAGCGTCTTAACTTGTGGAAGAT
CAGATTGCACCTGACCATTCTTATGCATAGGAATTTGATTATTAAATTAGTAATGAGAAGTAGA
GGCCTTCATTTGCATATTATGAAATACTGTGTGGTAAGACAGATACATTGATCTGGAATTGATA
CTAATTTCACAGTGGAATTTTGAAAATTTGACTCTTAAAGTCCAGAACCAAATTAAATGACATG
TTCCTCCTCTGCCCATTAAACCCTAGATGTGACCTGAGTGGCATGAAGGCATGAGGGACTTGTG
GGCTCAGAATGACACTGATACCCAGTGGCGTCTTTTCAGCTGCATAGCATTGCTGTCCAGTGCA
GAGACATGGAAGTCCGGCAGTGTGTGCTGGCTGTGGAGGGGCGGGCCACAGTGCCTTTTAGGGG
TGGCTGCAGACCTCTGTTACTGGTCCATTTGTGATTATCTTAAAGTTCTGTTCCCAGGATGTGC
AATAGTAGCATTGAAAAGCAGTGTTCAGAGTGATGGGAGCAGGTACTGTAAGGAATGAGCTTTC
TTCCCATGGTGCATCGTTAGGTTTGCATGCATATTTGGAATTAACCCTCAGCAGCACTTTGAGG
TAATTTAGTGGGATAATATTGTGTAAACTAAGTAAGTATTGATAGATGACTTAGCTAGATGTTT
GAAATCTGAAACCATAAAAATATTTTTATCTTACTGAGTTAAAGGAGAAAAGCCATTGGTTTGT
TTTCACAGATGAAATATTTGGTAATTTCCTGTCTTAGCACAGAGCTGCCTTGGGTCCAAGGGCA
CCATTTAAACTCAGGCTGGGTGTGGTGATCCCAGCACATGGGGAATGGAAGCTGGAGGATCAAC
AGTCAGGGCTAGCCTCAGCTACATAGTAAGTTTGAGACTAGCTTAGGCTACACAGGACCCTGTA
TCAAAAAAACAAGGAAAAACCTCAACAACTTTGTAAGAAACCATGCGGCCTTGTGGGGTTGGAG
AGACCTGTCTTCTTGATGTGAATGAATTTGCAGAAACACGTGCTTGGTTAGTGCATGGGCACGT
GCCCTTTTTTTTAAAGTTGGTATATAATCTTGCTGTGTGTATGAGGCAGACATTTCTTTCTATA
GACTACCTCCTTCCTGACAAAGTCTGAGCTTTGTGTTGGTTCGAATAGCCATAGAATTCTTAGC
ATCAACAGATGTATTCAGGGATGAGCGCACCCTCAGCTCACCTCTGGCGTCCACCACCCGTCAC
CTTGCTAGGGCAGATGGGGCTGGGCCTCAGTAGCCTGAAGCAGGGGAAATGAGCAGACTGTTAG
AGACACCTTCTGCTCTGGACCGTCTATGCTTAGCCCTGTGACTGAAGGGGTGAGAGTGGGGGTG
TTAGGGTGGTCCTGTGAAGGCCTGTGTTGGAGGGTCTGCCAGTCCCCTTGGGCGTCCATTGGTC
CCTTGTGGGTTTGAATCCACGTTAGAACTGAGAAGGATGTGTGCGTAGGCTCAGAGCAGTGCCA
CACCCTGGGTGGGTTTTCACTTAAACTGTACTTTTACTCATGCTGATGTTTTTAAAATATAAAA
TTAAAATGTCAAGTTTAACTTAAAGTAAGTTTTTAGTGACTTCTGATAGTATTATTGTGTTGTT
ACAACCCTATGGCATAGTCTGTATGTTTGAATAAGGGTAGAAGTTTCTACTGATTAAAAAAGCA
TATAATAGAATCTTGAAGCCTTCAAAAGGCCAGCACTTCATTGAGTTAAAATAGTTTCTTTTTC
TTCACTTTTTAACAGTTAAAATATAAGTATAATTTTTCCACTATGTTTTTTTGTTTGTTTTTGT
TTTTGAGATAGGATTTTTCTGTCTCCAACCGGGCTATGAACTGAATCCCAAATGCTGACATTTG
CAAGTGTGGGCCACCAGGTCTGGCTGTTTCTTCAAATTTGTAGAGAAAGTAAGTCCATGAATTT
GTACGGAGTACTGACTAGCCTTTTATTCTTAAACTGGAAGATTCTTTGTGTATTTATATACCAT
CCTAGAAATCAAAAAGGCAGGAGAGACTGGCAGATATACCAGAGGCTTGGTGTTCATGGCATAA
TGTCACCTATAAGAGCCACCCTGGTCTTACGCTGTGTGAGTTCCAGTACTCTGTTACTGTGGCC
TCCAATTTTAACATTCTGAACGTCGCATTGAGCCCCTCAGTGAAATTGCAGAAGAGCAGTCAAT
CTTTTGGAACACACACCTTGATCAGGAAAAGTTTTGTTGTTGTTGTTTCTTTTCTTTCTTTTTG
TTTTTTCTGAGACTAGACCTGTAGTTTAGGCTGGCCTCAAACTCTCCGCAGTCCTCCTGCCTTG
GCATCCTAAGTACTGAGATTATGAATGTGACCTGCTGTATTTAGCACAGTGAAAGTTTTTCAAC
ATAGAAATTTCTCTCAAAAAATTGACCTGTATCACCTTACTAAAGGGACATGCACGCTCTACTG
TAACATACAAAACGGGAAGCGTTAGCAAAAGAAATAAGTGCTGGGTAGCAAGTGGCCTCGCGCC
TAGAAGTAAACACTCCCCTAAATCACTGACAACATGGCGGAGCTTGTTTGATTCCCAAAAATAC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGAGAGAGAGAGAGAGA
GAGAGGAGAGAGACTGAGTGTGAGTGCATGAGTGTCAGAGACAGAGATGGGTGGGGGAGGGGGA
GTTCTAAAAAAGCCTTGACATTCTCTGGGAGCCTTGTCATAGTTTTTCAAATTTCCTGTTAATT
CTTTTTCATGGGGATTTGTGCCCCAGTGCCTCCTAGACTTCTGCACACCCTGACAGCCTGTTCC
TTTTCATGTCTGTATCACACACAAGTGACATTGTTATTCTTATGGTCTTTGCAAACGTCTTTGG
CCTTATCTTTACAAACAGCCTCATAATTACACGAAGTTACTTTATGCTAGAATATACACCAGCT
TCTGCTCTCTGGCTGGATTGCTAAGCCTGAAGGGATAGTTTACTTGATGGCTTATTCTCACTAT
CACCTGTTTACTACATATGTGTCATTTGCCTGTGCCAAAAACTGGGCGTTATGCCACCATGGTA
TTCTTTGTCATGGATAGGTGTCGAGACAAGTGCAGACCTGAGCAGAAACCTGGGCTCAGAGTGA
GTTCCCAAACAGCAAGACTCAGGTGTTGACACTGCCTTCTGTTGTCTGAAGGTTTCTAAAATGG
ATTTGAGCAGCAGAGTGTTCAACCCACAGTACCGTTCCTTCTGGCAGACACTCTCGCAGAGGCC
AGCTTCTGTGGCAAGCATTTCATCAGTCTTCTAGGCCTGCTGTTTTCAGAGCAGCACTGCCCCA
GTGTTTCTCTTAGATATCAGAACCACTTACCGAAGGTGCCATTTCCATCTTGGGGCGGGGATGC
TCATGGGTGATGGTGTGTCCCGTGCTCTTTGGAACCTGTCACTATCAGAGTCATGTTTTCACCT
GCAAACACAGCAGATGTCCCCGTCAGTGTGCAACAGGGACTCCATCCGAAGCTGACAGTGCTTC
ACGCTGCTTTGCATGGCTGAAACAGAATGTGACAAATGTGACAAGTAGCCAGCTTGCCAGAGAG
GAGCCGTTTCATAGGTGCTGCTGTTTGCAGTTAGCCCCTGGGAAAGGTAGAAATGCAGAGTGGC
TTATGGGAGAGTAGCTGCCTGCTAACATGGTTAGACTTGCTCCTGTGGTGCTGGGGACAGAACC
AGGCACCTTGAGTGTGCTAAGTGACCGATGCTGGGTTACACCCCCAGCAACCTCCCCCCATTAC
TTTAAGTGACACCTTTAACTAGGAAATCCCCAGAGATGGCAGTTTCTTGAGTGTTAAGTGGATT
GCACATGGGGCAGTTTCATGAAGCTAACTTGTCTTTGAAATACTTAAGTTGGAATTGAGCACAT
TAAATCCTGAGGCATTAGCTGAGTGCATCTCTTGTGTATATACTGCCATGTTGACCCACAGCGT
GAGTCTTTTTCAGAGAGAGGCACATTCATCCCCAAAGATGGCTATTAATCTATTCGTTCTAAAC
CTAAGAACACCCATCCACTGCCGCAGGTGTCACATGATGACCTTGTTCAGTTCAGTTTCAAATG
CATTCGATCTTAAAGACCAGTCACCTTATCCTCCTCTCTTCTGTTCACACATTAAACATAGGAC
ATCTTTTCTAAAACTCTGCAATCTGTTTGTTTTCATATAAAATTGCTTCTGGGTTGACTGGGAA
GTCCCAGGAGGTGTCTAGGGTGTAATAGGCCTGGCTTGTTGGCATAATGTACCCTTTAAACCAT
ATATAGGCAGCATGAGCAGAAACCTCGAGGGGATCAGGAAGAATGGTCTCATCTTTGCCTTGTT
CCCATCTTAGTAAACCCACTGATTTCTCCTCCTGCGGGGATGCGGGGAGATGGGGTGCCTGGCA
GCTGGTCCAGAGGTTCTGTCAGTAGCAGCATTTGCTTTGCTAGCTTCAAGCCCAGGACTGCTGT
AAATGGCTGTTAAATCACTTGGCACTTTCTTGGGATCTGTATTAGCACTGTTCATTCGTTTGTT
TGTTTGTTTGTTGTTTGTTTGTTCATTGGTTACTTTTTGAGACAGGGTCTCATTGGGTAGTTCT
GAGAAACTTGCTATGTGGAACGGGCTGGCCTTGAACTCACATAGATCTACTTCCGCTCCTCAGT
GCTGGGATTAAAGGTGTGCACCACCATGCCCAGCTGTTTTTGTTCTTAAAAACTGGAAGCACTT
AACGGTTGTTTTTGTTTGATTTCAGCTTCAGGATATTGCCGGTCAGGGAAATAGGGTTTATTTC
TTACTTCTAGTTTTGGGAACTTAGTGTTTGGAGAAGGGAGCAATGGATCACCCTTTGAGTCTTC
CTTCCAGGCTGTGTGAGGCAGCCTCTTTGAGCTAGGATGTAAATGGCTCAAGGTCTCTTACTAT
TGTGCTTTGTAGAAATGTATAATTTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCT
AGCAAGTGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGGGGGGAAAAAAAAAAAGAAAGAAATGT
ATAATTTTAGAAAGTGATTGGCAGTTGGTAGATTGCACTGTAAATTTGAAAAGTATACAATTGC
TAACATTTTGTGTTATTTTCCTTTGTTGCTTATTTCTGTTACATAGGGGACCGAGTCCCTTCTG
AGACAGTTCATTGTTTGCTTGAGGACAGTATTTCCGCCACTGCCACTGCTGGCATACGACAGAA
GAGCATGGTTCAGTCCTCTCTGCTGAGCTAAAATGGATCAGCTAAAATGTACACGTATGCAGAA
GCGCACACGGATGCTTGGGCCCCGGAGGCCTGCTTACAGGTGCGGCTGAGGCTGTTCCCTCTGC
CCCTGGCAGTTCCGTGGATCTTCATGGATCGGAAAGACTAAACTTAAACTCTGGGACTGCTGGC
ATATGCCTGTAATCCTGTAAACCCAGGAAGGTTCAGGTGCTGTATAGTGAGTTTGAGGCCAGCC
TGAGCTACACGAGAGCCTTTCTGAAATACATTTAAGAGGTTCACTGGTTCGGAGCACCTGGTGA
TCTTCCAGAGGAACAGAATTGGCGCAACACTGCCTGTAGTTCCAGTGCTAAAGGGTCTAGCGCC
CTCTTCTGGCCTCCATAGGCATCTGCACACATTAAACAAACCACCTTTTAAAACATTTTTTTAA
AAGCTTTAGTTCATTTTGCAACTAATATTCTAAACATAAAATCTTTGGTTAAAGTGAGTTTCTT
AGGATTATTCCCTTTATTCACCAAAATAATCAAATTGGACTTTCCCCCCCTTCTTTAAGTAGGT
TTTGTTTTTATGAACTGCTGGTTACAACTGTGTCTCCATGTATCAGCCTCCTACATGGCTGGGC
CGACAGGCACATGCCACCACATCGGCTTACATTTGCATTTAAGAGCAATCTAATGATTTCCATG
AGTCCTATCAGAACTTCTGTTTTAAAAACCTCCTAAGCTGGAGCTTTATTTAGGTTGGTCGGTA
GGGTAGCCCAAGGTTTGAGTCTCATTACTCCATAAACCAGGAGTGTGGCTCAAACCTGTAATCC
TCAAACTAGGAATATAGAAGTGAGATGATCAAGAAGTTCAGGGTTTCATCCTTGGCAAGTTCAG
GGCCAGCCCAAGGTTAATGATCCAGTCTTGGGGGAAAAAAATGAAAATAAAATTGTGAGGAGTG
GGAAGTAACCATGGGTTATTTTAGTGTGTGCTAGGAGGTTGAATCACAGCAAACCTGGCAGTTG
ACGCACTCTAAGGCGTGAACATGATTTAAAAGGTAAATAACAAAGAACAAACGCTTGTTTCTCA
TTCAGTTAATCTATAATTTAGCAAAAGCATGAGTCTGCCTTGGAGTGACTGCAGTGTATATATA
CACCGGTGTCTGCACAGGTAGAGGGGAGCGGGTTCCTGTGTATGAGTTTGGAATGGCTGGTAAA
AAGGACTGACAGGGTACTCACTCAGCCCCTCAGGGGAGTGGCTGTCTGGGTGAGACCTCTTGTT
TATTGTATCAACCTCCGCATCTCTGGTTACCCAGTGTCGCCACTTTGTATAAGGAGATGTTAGG
TGCGAGCAGCACCTGCCCACAAGAGTCGCTTACTGTCAGAGCGTCGCGAATGGTATGTCTCAGG
TAGGTTTAGTTTACACTAAGGGGACCTGCAAAGTACTCCGATCTCTGTTCTTTTCTGAAAAAAC
AATTACTGTGGCAACTGCTAACCGTCCTTAAAATTAACATTAGTTGTTCTTACAGATGGACAGA
ATGGTCATCTCAGCTAGCTACCCAGTAGCACGTAACTGTGGAGACAAAAGGGTGTTGCTTTAAG
GCTGGTGAAGCAAGTGCAGAGTCTTGAATTCTGCCTTTCGGGTGAGGAATGTCTTGAAGTTAAA
GGGAGAGGGGGCAAAGGACGCATGCGCACTTTGAGGGCTTTCTAATGCACTTCTGTTCAAAGAA
AAGATGGCGGTTCAGTTCGATGGGTGCCATTTCCAGGCATTGCAAGGGACTGCCCCAAGTAACC
CGCCAGGGGTCCTTACTTCTGTTGCTTCTAAGCTGTATGCAAAAGCGTTGTTAACTTCTATAAA
GATCATGTGTATTTTAAGAAAATGCAGTTTTTAAAACTTTTATGTAAGAACTGACAGAGGGATT
TGCTTGTATGTGGGAAGCTGGCTTTGAGAAAGCACTCTGGCGGGTTTATTCCGAGTCTAGAGCT
CTCGAGATCTGTCAGTAGATACATGTGCAACTAGATACGGACAACAATTGTATTTTTTTAAAAT
AAATATTTTTAACAAAA

hide sequence

RefSeq Acc Id:

NM_001415725 ⟹ NP_001402654

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,189 - 46,021,453 (+)	NCBI
mRatBN7.2	13	43,452,017 - 43,469,282 (+)	NCBI

RefSeq Acc Id:

NM_001415726 ⟹ NP_001402655

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,690 - 46,021,453 (+)	NCBI
mRatBN7.2	13	43,452,518 - 43,469,282 (+)	NCBI

RefSeq Acc Id:

NM_001415727 ⟹ NP_001402656

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,924 - 46,021,453 (+)	NCBI
mRatBN7.2	13	43,452,752 - 43,469,282 (+)	NCBI

RefSeq Acc Id:

XR_010056914

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,666 - 46,027,206 (+)	NCBI

RefSeq Acc Id:

XR_010056915

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,861 - 46,027,206 (+)	NCBI

RefSeq Acc Id:

XR_595425

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	46,004,145 - 46,027,206 (+)	NCBI
mRatBN7.2	13	43,458,424 - 43,475,035 (+)	NCBI
Rnor_6.0	13	48,788,262 - 48,813,267 (+)	NCBI

Sequence:

show sequence

AGCCATGTCCTGCATTGAATCCGATGCTGTCTATTATCATCTTTTGATAATATGTGTGAACTAA
GAAGAGCAGAGAAGTTAACTAGCTTATTGAAAGCAACCTGCCTGGCAGCCTGTTAAACAGAAGA
CATCGATCCATCTCTTCAGAGGATGGAGTGGAATTTGGCCAAGATCCTGCAGCTGGAGAGCTCA
CAGACTTAGAGGTGAACCTACTACCATTGTTTTGTTAACTGGACATAGTGTCAGACTGCCGTGT
AAGTACTTATCACTAAACTAATAGGTAAGTGCAACTCTCAGTCCTCTCTAGAGAAGCTTCTTTT
TCTAATACAGAGTCACACCTGGTCAAAGTGCAAAGAAGTGATGTCTGTGGAGTGCTCAGCCATA
GTAGATGTGACATCTATATCATGTTACCTCCACACAGGCTCAGGGAACACTGAGGAGGAGGAGG
TGGTGGTGGAAGGATTGTTAAGAGGTAGAGGTCTGGGATGACTGGACTCTTCTGGACATGACCA
CTGCACTCATGAATTCACAGCAGCCATGGTTGCCTGTTAAAGATCTGTACAAGAGCAAGCAGTC
AACATTCCAGTGTGAATGGAGCCTAGAAGCCCCACCCCTAGCTGAAGAACTATTGGCCTTTGAT
GGCTGCTAGGCCCATTGCTATGGACAGTGCCATTACTCTGTGGCAGTTCCTTCTTCAGCTCCTG
CAGGAGCCTCAGAATGAGCACGTGATCTGCTGGACCTCTAACAATGGGGAGTTCAAGCTTCTGC
AGGCGGAGGAGGTGGCTCGCCTGTGGGGGATCCGAAAGAACAAGCCTAACATGAATTATGACAA
ACTCAGCCGAGCCCTGAGATACTACTACGTAAAGAACATCATTAAAAAAGTGAATGGTCAGAAG
TTTGTATACAAGTTTGTCTCCTATCCAGAGATTTTGAAAATGGATCCACTGACGGTAGGCAGGA
TTGAGGGAGACTGTGAAACTTTAAATTCCATTGAAGCCAGCAGTTCCAAAGATGCTGAGTGTGG
AGGAAAGGAGAGGCCACCTCAGCCTGGAGCCAAGACATCCAGTCGCAATGACTACATACACTCT
GGTTTGTATTCTTCCTTTACTCTCAACTCTCTGAACACCTCCAATAAGAAGCTTTTCAAGTCAA
TAAAGATAGAGAATCCAGCAGAAAAACTAGCAGAGAAGAAAGCTCAGGAGCCAACCCCGTCCGT
GATCAAATTCGTGACAACACCTGCCAAAAAGCCGCCCATGGAGCCTGTCACTGTTGCCTTTTCA
ACAAGCCCTAGTGTTTCTCCATCTTCTGAAGAAACTATCCAAGCTTTGGAGACTCTGGTCTCTC
CCACACTACCTTCCCTGGAAGCCTCAGCCTCTGTATCCATCCTGGCTACCACCTTTAACCCCAC
TCCTCCAGTTCCTTCCATACCCCTTCCTCTACAGGAGCCTCCCAGGACACCGTCTCCACCGCTG
AGTTCTAACCCAGACATTGACACAGACATTGAATCAGTGGCTCCTCAGCCCATGGAACGTCCAG
AGAACTTGTCACTGGAGCCTAAAAATGAGGATTCAGCTTTGCCAGAAAAGGACAAAACAAATAA
CTCATCAAGATCCAAGAAGCCAAAAGGGTTAGAACTGACGCCCGCCCTTGTGGTCACAGGCAGT
GACCCCAGCCCCTTGGGGATCTTAAGCCCGTCTCTCCCAACAGCGTCGCTTACACCAGCACTCT
TCTCACAGACACCCATCCTGCTGACGCCGAGCCCCTTGCTCTCCAGCATCCACTTTTGGAGCAC
TCTCAGCCCGTTTGCTCCTCTGAGCCCAGCCAGACTGCAAGGTGCTAATACGCTCTTCCAGTTC
CCTTCTGTACTGAACAGTCATGGACCATTCACTCTGTCTGGCCTGGATGGACCTTCCACTCCGG
GCCCGTTTTCTCCAGACCTGCAGAAGACATAACGAGTGCAGTTGTGGACTAAGAGACTAAGGAA
CTAGGACATAGACATCAGCATGACTCAGTTCGAAATGAGGGGTAGTTCTGCAGTGCTCATAATA
GACCGTTGTGATTTTTCCCACTGCCTGTTGACAAGCCTTTTCAGGACTCTCAAAAGTTGGACTG
TACAAAAAATGCCTTAATTGGAGTCCAAGCTCCACCTCACTTCTTTTTTTTTAAAGGTGTTTTT
TTTGTTGTTGTTGCCTTTTTTTCCTTTTTTCCTTTTTTTTTTTTTTAAAGCTTTGTGCAAAAAA
CATTGGATAGTTGAGGTTCAGCAGCTGTGTTTCTCAAGAGTCACCGAACAAAGTCACCAGCCCT
GGATGTGAGGACCCACATCCAGGGGAGAAAGTGTGCTTAGAGCCTGTTACTTAAAGGAATTCTT
GTCCACTATGTGTGATGACCCACTTCTGCAGTCTCAGCACTTGGGAAGCTGAGGTGGGAGAATA
CCAAGGGTGGAGGGCCAGCCTGCGCTATATATATTGTGAGGTTGTCTCAAAAAGACAAAAATAC
GACTTAAATGAAACCAGCAGCATATTTTGTAGTGAGTGCGCTCTGTTGAATGTCTAAGGGGAGC
GGCTCATGAGCAGTGGGAGAAACCTTAGGAGGTCAGCCATGCTGAGGATCTGTTTTGCCGTGAG
CGCTGACATTACAGTTCTACAGAAGGGTGTCTTGTTTGCACTTACCTGGGCAAATCTCTGCTAT
CCGTACCTGTGATCCTGTCTGAACCTGTCCCTAGGCCCCGAGCTGTTTTAACACAAGACTTGGA
AAGCTCAGTTTTAATGTGGGTTTTGGAACATTGGTTGAGACTAGGAGATCCCACTGTGAGCACA
GATCTCTGGTGTGTGCTTTGAGCAGTGTGGTTCTGTAGCCATGCAACACAGCATGCAAGTGGTG
ATTTTTCCTGAGAGGAGAGTTGTGGTTTGAAAATTGAATGTCACAAGCAACCAAAAAGGTTCAG
TGAAACACCCTGAGACAGGAGGTGGGGTGTTTCCAGCTAGAAGACACCCAGAGTGCCAGGCCCC
TTTTCTTCTTGCCAGTTTCATCCCCTTACCATGCTGCTTTTAAATCTAAGGTCAGAAGATGATG
ATGCGTTCAGGTGTTGTAATCAGGAAGATGAACTCCAAAGGGAAACTTCGGTTAGCTGGAGGTA
GAGACGGGCTTACTGCTTTCCAAAAGCGTCTTAACTTGTGGAAGATCAGATTGCACCTGACCAT
TCTTATGCATAGGAATTTGATTATTAAATTAGTAATGAGAAGTAGAGGCCTTCATTTGCATATT
ATGAAATACTGTGTGGTAAGACAGATACATTGATCTGGAATTGATACTAATTTCACAGTGGAAT
TTTGAAAATTTGACTCTTAAAGTCCAGAACCAAATTAAATGACATGTTCCTCCTCTGCCCATTA
AACCCTAGATGTGACCTGAGTGGCATGAAGGCATGAGGGACTTGTGGGCTCAGAATGACACTGA
TACCCAGTGGCGTCTTTTCAGCTGCATAGCATTGCTGTCCAGTGCAGAGACATGGAAGTCCGGC
AGTGTGTGCTGGCTGTGGAGGGGCGGGCCACAGTGCCTTTTAGGGGTGGCTGCAGACCTCTGTT
ACTGGTCCATTTGTGATTATCTTAAAGTTCTGTTCCCAGGATGTGCAATAGTAGCATTGAAAAG
CAGTGTTCAGAGTGATGGGAGCAGGTACTGTAAGGAATGAGCTTTCTTCCCATGGTGCATCGTT
AGGTTTGCATGCATATTTGGAATTAACCCTCAGCAGCACTTTGAGGTAATTTAGTGGGATAATA
TTGTGTAAACTAAGTAAGTATTGATAGATGACTTAGCTAGATGTTTGAAATCTGAAACCATAAA
AATATTTTTATCTTACTGAGTTAAAGGAGAAAAGCCATTGGTTTGTTTTCACAGATGAAATATT
TGGTAATTTCCTGTCTTAGCACAGAGCTGCCTTGGGTCCAAGGGCACCATTTAAACTCAGGCTG
GGTGTGGTGATCCCAGCACATGGGGAATGGAAGCTGGAGGATCAACAGTCAGGGCTAGCCTCAG
CTACATAGTAAGTTTGAGACTAGCTTAGGCTACACAGGACCCTGTATCAAAAAAACAAGGAAAA
ACCTCAACAACTTTGTAAGAAACCATGCGGCCTTGTGGGGTTGGAGAGACCTGTCTTCTTGATG
TGAATGAATTTGCAGAAACACGTGCTTGGTTAGTGCATGGGCACGTGCCCTTTTTTTTAAAGTT
GGTATATAATCTTGCTGTGTGTATGAGGCAGACATTTCTTTCTATAGACTACCTCCTTCCTGAC
AAAGTCTGAGCTTTGTGTTGGTTCGAATAGCCATAGAATTCTTAGCATCAACAGATGTATTCAG
GGATGAGCGCACCCTCAGCTCACCTCTGGCGTCCACCACCCGTCACCTTGCTAGGGCAGATGGG
GCTGGGCCTCAGTAGCCTGAAGCAGGGGAAATGAGCAGACTGTTAGAGACACCTTCTGCTCTGG
ACCGTCTATGCTTAGCCCTGTGACTGAAGGGGTGAGAGTGGGGGTGTTAGGGTGGTCCTGTGAA
GGCCTGTGTTGGAGGGTCTGCCAGTCCCCTTGGGCGTCCATTGGTCCCTTGTGGGTTTGAATCC
ACGTTAGAACTGAGAAGGATGTGTGCGTAGGCTCAGAGCAGTGCCACACCCTGGGTGGGTTTTC
ACTTAAACTGTACTTTTACTCATGCTGATGTTTTTAAAATATAAAATTAAAATGTCAAGTTTAA
CTTAAAGTAAGTTTTTAGTGACTTCTGATAGTATTATTGTGTTGTTACAACCCTATGGCATAGT
CTGTATGTTTGAATAAGGGTAGAAGTTTCTACTGATTAAAAAAGCATATAATAGAATCTTGAAG
CCTTCAAAAGGCCAGCACTTCATTGAGTTAAAATAGTTTCTTTTTCTTCACTTTTTAACAGTTA
AAATATAAGTATAATTTTTCCACTATGTTTTTTTGTTTGTTTTTGTTTTTGAGATAGGATTTTT
CTGTCTCCAACCGGGCTATGAACTGAATCCCAAATGCTGACATTTGCAAGTGTGGGCCACCAGG
TCTGGCTGTTTCTTCAAATTTGTAGAGAAAGGGACCGAGTCCCTTCTGAGACAGTTCATTGTTT
GCTTGAGGACAGTATTTCCGCCACTGCCACTGCTGGCATACGACAGAAGAGCATGGTTCAGTCC
TCTCTGCTGAGCTAAAATGGATCAGCTAAAATGTACACGTATGCAGAAGCGCACACGGATGCTT
GGGCCCCGGAGGCCTGCTTACAGGTGCGGCTGAGGCTGTTCCCTCTGCCCCTGGCAGTTCCGTG
GATCTTCATGGATCGGAAAGACTAAACTTAAACTCTGGGACTGCTGGCATATGCCTGTAATCCT
GTAAACCCAGGAAGGTTCAGGTGCTGTATAGTGAGTTTGAGGCCAGCCTGAGCTACACGAGAGC
CTTTCTGAAATACATTTAAGAGGTTCACTGGTTCGGAGCACCTGGTGATCTTCCAGAGGAACAG
AATTGGCGCAACACTGCCTGTAGTTCCAGTGCTAAAGGGTCTAGCGCCCTCTTCTGGCCTCCAT
AGGCATCTGCACACATTAAACAAACCACCTTTTAAAACATTTTTTTAAAAGCTTTAGTTCATTT
TGCAACTAATATTCTAAACATAAAATCTTTGGTTAAAGTGAGTTTCTTAGGATTATTCCCTTTA
TTCACCAAAATAATCAAATTGGACTTTCCCCCCCTTCTTTAAGTAGGTTTTGTTTTTATGAACT
GCTGGTTACAACTGTGTCTCCATGTATCAGCCTCCTACATGGCTGGGCCGACAGGCACATGCCA
CCACATCGGCTTACATTTGCATTTAAGAGCAATCTAATGATTTCCATGAGTCCTATCAGAACTT
CTGTTTTAAAAACCTCCTAAGCTGGAGCTTTATTTAGGTTGGTCGGTAGGGTAGCCCAAGGTTT
GAGTCTCATTACTCCATAAACCAGGAGTGTGGCTCAAACCTGTAATCCTCAAACTAGGAATATA
GAAGTGAGATGATCAAGAAGTTCAGGGTTTCATCCTTGGCAAGTTCAGGGCCAGCCCAAGGTTA
ATGATCCAGTCTTGGGGGAAAAAAATGAAAATAAAATTGTGAGGAGTGGGAAGTAACCATGGGT
TATTTTAGTGTGTGCTAGGAGGTTGAATCACAGCAAACCTGGCAGTTGACGCACTCTAAGGCGT
GAACATGATTTAAAAGGTAAATAACAAAGAACAAACGCTTGTTTCTCATTCAGTTAATCTATAA
TTTAGCAAAAGCATGAGTCTGCCTTGGAGTGACTGCAGTGTATATATACACCGGTGTCTGCACA
GGTAGAGGGGAGCGGGTTCCTGTGTATGAGTTTGGAATGGCTGGTAAAAAGGACTGACAGGGTA
CTCACTCAGCCCCTCAGGGGAGTGGCTGTCTGGGTGAGACCTCTTGTTTATTGTATCAACCTCC
GCATCTCTGGTTACCCAGTGTCGCCACTTTGTATAAGGAGATGTTAGGTGCGAGCAGCACCTGC
CCACAAGAGTCGCTTACTGTCAGAGCGTCGCGAATGGTATGTCTCAGGTAGGTTTAGTTTACAC
TAAGGGGACCTGCAAAGTACTCCGATCTCTGTTCTTTTCTGAAAAAACAATTACTGTGGCAACT
GCTAACCGTCCTTAAAATTAACATTAGTTGTTCTTACAGATGGACAGAATGGTCATCTCAGCTA
GCTACCCAGTAGCACGTAACTGTGGAGACAAAAGGGTGTTGCTTTAAGGCTGGTGAAGCAAGTG
CAGAGTCTTGAATTCTGCCTTTCGGGTGAGGAATGTCTTGAAGTTAAAGGGAGAGGGGGCAAAG
GACGCATGCGCACTTTGAGGGCTTTCTAATGCACTTCTGTTCAAAGAAAAGATGGCGGTTCAGT
TCGATGGGTGCCATTTCCAGGCATTGCAAGGGACTGCCCCAAGTAACCCGCCAGGGGTCCTTAC
TTCTGTTGCTTCTAAGCTGTATGCAAAAGCGTTGTTAACTTCTATAAAGATCATGTGTATTTTA
AGAAAATGCAGTTTTTAAAACTTTTATGTAAGAACTGACAGAGGGATTTGCTTGTATGTGGGAA
GCTGGCTTTGAGAAAGCACTCTGGCGGGTTTATTCCGAGTCTAGAGCTCTCGAGATCTGTCAGT
AGATACATGTGCAACTAGATACGGACAACAATTGTATTTTTTTAAAATAAATATTTTTAACAAA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100643	(Get FASTA)	NCBI Sequence Viewer
	NP_001402654	(Get FASTA)	NCBI Sequence Viewer
	NP_001402655	(Get FASTA)	NCBI Sequence Viewer
	NP_001402656	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68230	(Get FASTA)	NCBI Sequence Viewer
	EDM09809	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000105552
	ENSRNOP00000105552.1

RefSeq Acc Id:

NP_001100643 ⟸ NM_001107173

- UniProtKB:

B4F7D4 (UniProtKB/TrEMBL), A6IC38 (UniProtKB/TrEMBL), F7FGI9 (UniProtKB/TrEMBL), A0A8I6ASJ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSAITLWQFLLQLLQEPQNEHVICWTSNNGEFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR
YYYVKNIIKKVNGQKFVYKFVSYPEILKMDPLTVGRIEGDCETLNSIEASSSKDAECGGKERPP
QPGAKTSSRNDYIHSGLYSSFTLNSLNTSNKKLFKSIKIENPAEKLAEKKAQEPTPSVIKFVTT
PAKKPPMEPVTVAFSTSPSVSPSSEETIQALETLVSPTLPSLEASASVSILATTFNPTPPVPSI
PLPLQEPPRTPSPPLSSNPDIDTDIESVAPQPMERPENLSLEPKNEDSALPEKDKTNNSSRSKK
PKGLELTPALVVTGSDPSPLGILSPSLPTASLTPALFSQTPILLTPSPLLSSIHFWSTLSPFAP
LSPARLQGANTLFQFPSVLNSHGPFTLSGLDGPSTPGPFSPDLQKT

hide sequence

Ensembl Acc Id:

ENSRNOP00000059567 ⟸ ENSRNOT00000065094

Ensembl Acc Id:

ENSRNOP00000070409 ⟸ ENSRNOT00000090233

Ensembl Acc Id:

ENSRNOP00000074516 ⟸ ENSRNOT00000087504

Ensembl Acc Id:

ENSRNOP00000096481 ⟸ ENSRNOT00000093870

RefSeq Acc Id:	NP_001402654 ⟸ NM_001415725
- UniProtKB:	B4F7D4 (UniProtKB/TrEMBL), A6IC38 (UniProtKB/TrEMBL), F7FGI9 (UniProtKB/TrEMBL), A0A8I6ASJ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402655 ⟸ NM_001415726
- UniProtKB:	B4F7D4 (UniProtKB/TrEMBL), A6IC38 (UniProtKB/TrEMBL), F7FGI9 (UniProtKB/TrEMBL), A0A8I6ASJ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402656 ⟸ NM_001415727
- UniProtKB:	B4F7D4 (UniProtKB/TrEMBL), A6IC38 (UniProtKB/TrEMBL), F7FGI9 (UniProtKB/TrEMBL), A0A8I6ASJ8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105552 ⟸ ENSRNOT00000147160

Protein Domains

ETS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B4F7D4-F1-model_v2	AlphaFold	B4F7D4	1-430	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698807

Promoter ID:

EPDNEW_R9330

Type:

initiation region

Name:

Elk4_1

Description:

ELK4, ETS transcription factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9331

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,790,766 - 48,790,826	EPDNEW

RGD ID:

13698808

Promoter ID:

EPDNEW_R9331

Type:

single initiation site

Name:

Elk4_2

Description:

ELK4, ETS transcription factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9330

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,790,985 - 48,791,045	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310504	AgrOrtholog
BioCyc Gene	G2FUF-18329	BioCyc
Ensembl Genes	ENSRNOG00000007887	Ensembl
	ENSRNOG00000077523	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000147160	ENTREZGENE
	ENSRNOT00000147160.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Ets	UniProtKB/TrEMBL
	ETS_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:304786	UniProtKB/TrEMBL
NCBI Gene	304786	ENTREZGENE
PANTHER	ETS DOMAIN-CONTAINING PROTEIN ELK-4	UniProtKB/TrEMBL
	PTHR11849	UniProtKB/TrEMBL
Pfam	Ets	UniProtKB/TrEMBL
PhenoGen	Elk4	PhenoGen
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007887	RatGTEx
	ENSRNOG00000077523	RatGTEx
SMART	ETS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8I6ASJ8	ENTREZGENE
	A6IC38	ENTREZGENE, UniProtKB/TrEMBL
	B4F7D4	ENTREZGENE
	F7FGI9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B4F7D4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Elk4	ETS transcription factor ELK4	Elk4	ELK4, ETS transcription factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-03-01	Elk4	ELK4, ETS transcription factor	Elk4	ELK4, ETS-domain protein (SRF accessory protein 1)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Elk4	ELK4, member of ETS oncogene family	Elk4_predicted	ELK4, member of ETS oncogene family (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Elk4_predicted	ELK4, member of ETS oncogene family (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)