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Gene: Slc26a9 (solute carrier family 26 member 9) Rattus norvegicus

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Symbol:

Slc26a9

Name:

solute carrier family 26 member 9

RGD ID:

1310441

Description:

Predicted to enable several functions, including ATPase binding activity; inorganic anion transmembrane transporter activity; and oxalate transmembrane transporter activity. Predicted to be involved in chloride transmembrane transport; positive regulation of gene expression; and sulfate transmembrane transport. Predicted to act upstream of or within bicarbonate transport; chloride transport; and regulation of pH. Predicted to be located in apical plasma membrane and cell surface. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and plasma membrane. Orthologous to human SLC26A9 (solute carrier family 26 member 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; nitrofen.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC304784; solute carrier family 26 (anion exchanger), member 9; solute carrier family 26, member 9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC26A9 (solute carrier family 26 member 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc26a9 (solute carrier family 26, member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc26a9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC26A9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC26A9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc26a9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC26A9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC26A9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc26a9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc26a9 (solute carrier family 26 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC26A9 (solute carrier family 26 member 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc26a9 (solute carrier family 26, member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prestin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prestin	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YPR003C	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	YPR003C	Alliance	DIOPT (OMA\|OrthoFinder)
Caenorhabditis elegans (roundworm):	sulp-1	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-4	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sulp-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sulp-8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc26a9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc26a9	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,730,022 - 45,757,662 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	45,730,082 - 45,757,660 (+)	Ensembl				GRCr8
mRatBN7.2	13	43,177,806 - 43,205,450 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,177,867 - 43,204,330 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	45,781,310 - 45,807,692 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,069,454 - 47,095,836 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,334,148 - 44,360,532 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,512,415 - 48,539,467 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,513,008 - 48,539,467 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,585,166 - 53,612,745 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,668,744 - 44,695,203 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	43,516,301 - 43,542,751 (+)	NCBI		Celera
RGSC_v3.1	13	44,682,784 - 44,708,151 (+)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intestinal obstruction (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

all-trans-retinoic acid (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

dextran sulfate (ISO)

doxorubicin (ISO)

N-nitrosodiethylamine (ISO)

nitrofen (EXP)

okadaic acid (ISO)

paraquat (EXP)

piperonyl butoxide (ISO)

rac-lactic acid (ISO)

silicon dioxide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

zearalenone (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bicarbonate transport (ISO)

chloride transmembrane transport (IBA,IEA,ISO)

chloride transport (IEA,ISO)

monoatomic anion transport (IEA,ISO)

oxalate transport (IEA)

positive regulation of gene expression (IEA,ISO)

regulation of pH (ISO)

sulfate transmembrane transport (IBA)

transmembrane transport (IEA)

Cellular Component

apical plasma membrane (IEA,ISO)

cell surface (IEA,ISO)

endoplasmic reticulum membrane (IEA,ISO)

endosome membrane (IEA,ISO)

Golgi membrane (IEA,ISO)

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

Molecular Function

ATPase binding (IEA,ISO)

bicarbonate transmembrane transporter activity (ISO)

chloride channel activity (IEA,ISO)

chloride:bicarbonate antiporter activity (IBA,ISO)

identical protein binding (ISO)

oxalate transmembrane transporter activity (IBA)

protein binding (ISO)

solute:inorganic anion antiporter activity (IEA,ISO)

sulfate transmembrane transporter activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11834742	PMID:15800055	PMID:17673510	PMID:18769029	PMID:19199708	PMID:19289574	PMID:20658517	PMID:22544634	PMID:23933130

Genomics

Comparative Map Data

Slc26a9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,730,022 - 45,757,662 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	45,730,082 - 45,757,660 (+)	Ensembl				GRCr8
mRatBN7.2	13	43,177,806 - 43,205,450 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,177,867 - 43,204,330 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	45,781,310 - 45,807,692 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,069,454 - 47,095,836 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,334,148 - 44,360,532 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,512,415 - 48,539,467 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,513,008 - 48,539,467 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	53,585,166 - 53,612,745 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	44,668,744 - 44,695,203 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	43,516,301 - 43,542,751 (+)	NCBI		Celera
RGSC_v3.1	13	44,682,784 - 44,708,151 (+)	NCBI
Cytogenetic Map	13	q13	NCBI

SLC26A9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	205,913,052 - 205,943,456 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	205,913,048 - 205,943,460 (-)	Ensembl			hg38	GRCh38
GRCh37	1	205,882,180 - 205,912,584 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	204,148,799 - 204,179,211 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	202,613,832 - 202,644,245	NCBI
Celera	1	179,018,544 - 179,048,971 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	177,045,958 - 177,075,767 (-)	NCBI		HuRef
CHM1_1	1	207,305,644 - 207,336,056 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	205,177,732 - 205,208,143 (-)	NCBI		T2T-CHM13v2.0

Slc26a9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,671,760 - 131,699,242 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,671,760 - 131,699,242 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	131,744,022 - 131,771,504 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	131,744,022 - 131,771,504 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	133,640,599 - 133,666,982 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,571,568 - 133,597,951 (+)	NCBI		MGSCv36	mm8
Celera	1	134,348,529 - 134,374,882 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.18	NCBI

Slc26a9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	41,557,275 - 41,582,753 (-)	Ensembl
ChiLan1.0	NW_004955406	41,559,424 - 41,587,748 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC26A9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	43,433,874 - 43,456,648 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	43,399,366 - 43,422,182 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	181,521,826 - 181,544,564 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	185,805,689 - 185,836,074 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	185,807,517 - 185,828,444 (-)	Ensembl			panPan2	panpan1.1

SLC26A9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,267,404 - 2,303,997 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	2,276,065 - 2,304,066 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,367,878 - 2,396,646 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,272,424 - 2,301,195 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,273,256 - 2,293,217 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,266,507 - 2,295,256 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	2,658,174 - 2,686,946 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	2,859,093 - 2,887,881 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc26a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	69,321,775 - 69,350,275 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	6,562,109 - 6,588,502 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	6,562,125 - 6,588,200 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC26A9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	66,558,811 - 66,593,337 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	66,557,560 - 66,593,322 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC26A9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	23,406,997 - 23,432,003 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	23,408,157 - 23,429,198 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	24,098,007 - 24,128,381 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc26a9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	5,366,820 - 5,386,150 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	5,364,708 - 5,385,832 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc26a9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	4,073,401 - 4,100,035 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc26a9
88 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	642
Count of miRNA genes:	253
Interacting mature miRNAs:	324
Transcripts:	ENSRNOT00000009742
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH139651

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,176,922 - 43,177,132 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,512,064 - 48,512,273	NCBI	Rnor6.0
Rnor_5.0	13	53,584,222 - 53,584,431	UniSTS	Rnor5.0
RGSC_v3.4	13	44,667,800 - 44,668,009	UniSTS	RGSC3.4
Celera	13	43,515,357 - 43,515,566	UniSTS
RH 3.4 Map	13	111.4	UniSTS
Cytogenetic Map	13	q13	UniSTS

UniSTS:547065

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,185,215 - 43,185,360 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,520,357 - 48,520,501	NCBI	Rnor6.0
Rnor_5.0	13	53,592,515 - 53,592,659	UniSTS	Rnor5.0
Celera	13	43,523,648 - 43,523,792	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	10	62	108	61	62	31	55	31	6	275	147	10	85	77	91	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009742 ⟹ ENSRNOP00000009742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	45,730,082 - 45,757,660 (+)	Ensembl
mRatBN7.2 Ensembl	13	43,177,867 - 43,204,330 (+)	Ensembl
Rnor_6.0 Ensembl	13	48,513,008 - 48,539,467 (+)	Ensembl

RefSeq Acc Id:

NM_001107172 ⟹ NP_001100642

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,730,083 - 45,756,542 (+)	NCBI
mRatBN7.2	13	43,177,867 - 43,204,330 (+)	NCBI
Rnor_6.0	13	48,513,008 - 48,539,467 (+)	NCBI
Rnor_5.0	13	53,585,166 - 53,612,745 (+)	NCBI
RGSC_v3.4	13	44,668,744 - 44,695,203 (+)	RGD
Celera	13	43,516,301 - 43,542,751 (+)	RGD

Sequence:

show sequence

GCAGAGCCCTTTCACACACCTCAGGAACACCTCTCTGCTGCCCGCTGCCCAGACACACCTGCAG
CCCTGCCCAGCCGGCTCTGCTCACCCAGAGCTTGTCAATGTCCCAGACATGAGCCAGACCAGGC
CCCGCTACGTGGTAGACAGAGCTGCGTACTCCCTCTCCCTCTTCGATGATGAGTTTGAGAAGAA
GGACCGCGCCTACCCGGTGGGAGAGAAACTTCGCAACACCTTCAGGTGCTCCTCAGCCAAGCTC
AAAGCCATTGTGTTTGGACTGTTGCCTGTGCTCTCCTGGCTCCCCAAGTACAAGATCAAAGACT
ACATCATCCCTGACTTGCTGGGTGGACTCAGTGGGGGGTGCATCCAGGTGCCACAAGGCATGGC
ATTCGCGTTGCTGGCTAACCTTCCTGCCGTCAACGGTCTCTACTCCTCCTTCTTCCCCCTCCTA
ACCTACTTCTTCTTAGGGGGTATACACCAGATGGTGCCAGGTACCTTTGCCGTTATCAGCATCC
TGGTGGGTAACATCTGTCTGCAGCTGGCCCCAGAGTCGAAATTCCAGATCTTCAACGCCACCAC
CAATGAGACCTATGTGGACACAGTGGCCATGGAGGCAGAAAGGCTGCATGTGTCTGCGACACTG
GCCTGCTTGACTGCTGTCATCCAGATGGCCTTGGGCTTCATGCAGTTTGGCTTCGTTGCCATTT
ACCTCTCGGAATCCTTTATCCGGGGCTTCATGACAGCAGCTGGCCTGCAGATTCTCATCTCTGT
GCTAAAATACATCTTTGGTCTGACCATCCCCTCCTACACGGGCCCCGGCTCCATTGTCTTTACC
TTCATTGACATTTGCAAAAACCTCCCCCACACCAACATCGCCTCGCTCGTCTTTGCCCTGGTCA
GCGGTGTCTTCCTGGTCCTGGTGAAGGAGCTCAATGCTCGGTACATGCACAAGATCCACTTCCC
CATCCCTACAGAGATGATCGTGGTGGTAGTTGCAACAGCTATCTCTGGGAGCTGCAAGATGCCG
AAAAAATATCACATGCAGATTGTGGGGGAGATCCGACACGGGTTTCCCATTCCAGTGGCACCAA
TGGTTTCGCAGTGGAAGGACATGGTGGGCACAGCCTTCTCCCTGGCAATAGTGGGCTATGTCAT
CAATCTGGCTATGGGCCGAACCCTGGCCAACAAGCATGGCTATGACGTCGATTCTAACCAGGAG
ATGATTGCCCTGGGCTGTAGCAACTTCTTCGGCTCCTTTTTCAAGATCCATGTCATTTGCTGCG
CTCTCTCTGTCACACTGGCTGTGGATGGGGCTGGAGGGAAGTCCCAGGTGGCAAGCTTGTGTGT
GTCTCTGGTGGTGATGATCACCATGTTGGTCCTGGGATCCTATCTGTACCCTCTCCCCAAGGCT
GTACTAGGTGCCCTGATCGCTGTCAACCTCAAGAACTCCCTGAAGCAACTCACTGACCCCTACT
ACCTCTGGAGGAAGAGTAAGCTGGACTGCTGCGTCTGGGTGGTGAGCTTCCTCTCCTCCTTCTT
CCTGAGCCTGCCCTATGGCGTTGCAGTGGGTGTGGCCTTCTCCATCCTGGTTGTGATCTTCCAG
ACCCAATTTCGAAATGGCTCCACGCTGGCCCAGGTCATGGACACAGACATCTATGTGAACCCCA
AGACCTACAACAGGGTCCAGGAAATTGAGGGAGTTAAGATTGTCACTTACTGCTCCCCTCTCTA
CTTTGCCAACTCAGAGATCTTCAGGCAAAAAGTCATTGCCAAGACAGGTATGGACCCCCAGAAA
GTATTACTCGCCAAGCAGAAATATCTCCGGAAGCAGGAGAAGAGGATGGCAGTGCCCACACAGC
AGAGAAAGTCCCTCTTCATGAAAACCAAGACGGTCTCTCTACAGGAACTCCAACAGGACTTTGA
AAGCGCTGCCTCCACAGACCCCAACAACAACCAAGCTCCTGTGGCCGACGCTCACATATCCTAC
ATCACCTTCAGTCCAGACTCCTCCGCAACTGCTGCATCCGAGCTGCCCACCTCCACTCAGTCCC
CCAGGGAGGCTAGTGATGCTCTGGCCAGCGTGCCACCCTTCGTTACCTTCCACACTCTCATCCT
TGACATGAGTGGAGTCAGCTTTGTGGACCTGATGGGCATCAAAGCTCTAGCCAAGCTAAGCTCC
ACCTATGAGAAGATCGGAGTCCAGATCTTCCTGGTAAACATCCACGCCCAGGTGTACAATGACA
TCAGCCAGGGAGGCATCTTTGAAGATGGGTGTGTACAGCGCAATCACGTGTTCCCCAGCATCCA
CGATGCAGTCCTCTTCGCCCAGGCAAATGCTAGAGAAGCCCCAGCCCACAACTTCCAAGGGGCT
CCAGGGGACACTGAGTTCTCCTTGTATGACTCAGAAGAAGATGGCTCCAGTTATTGGGACTTAG
AACAGGAGATGTTCGGGACCATGTTTCACACAGAGACCCTGACTGCCCTGTGAACGCCCATTTG
ATTCCCATACATTCTCCTGAGCGCCTGCCATCTGGGATTTCCAAGAGAGAAGAGTATGTCTGTC
AAGAAACTAGAGCCTCTCTCAACTCTCTGTTCTCTCTCCCACCTTTCCCTCTCTCCCTGGGAGA
GAGCCATCTCAGCCTCTGAAGCTGAATGAGGCCTGACAAGGATGAGACTCTGGTGAAGCCGTCT
CATCTCCTCACTCTTGCCACTCAAACCTGGGCGGGCAATAAGCTCATTCCACCCATCTACACAA
GCCACACCCATCTGCACAAGCCCCACCCATGGCAGCTGATGGACACCTTGACTTCCAGCCTTAA
GAGTGAGCTAAGAACAGAATGATGAGAGCCACTGTGCTGAGCTGGGATGCAGGTCTGTGTCCTG
ATTGATTTGGCCTCAGAAGGTTTCAGGCTATCGTGGGTCACAGGGATGAGTGGGGTTAGAATGT
TGAAACTTTGTCCCTCCTAGCTGTTAGCTTTGTGCCTCAAAGACACGGTACTGCCGACAATCCA
GGAGTCTCTGTCTTTGTGCCCATTTCTCTCTCATTGCCCTAAGACTGCCCAGGCCTCCACTGCT
GTCCACACTTCAGACTCTGGGTTGGGCAGTGAGTAGAACCCTCAAGATTACCAGCACTACCTCT
CCAAGGACAGCCCACCAGGGGGCTGACTTCACCTTCTGAATCTTCCCCACCTGGAGGCTGCCCC
ATTCTGGGGAACAGATTGGCAGAATCCTTGGATACAACAGCAGCTATTCTGCACAAAATCTTCT
AAGAAACCCTCTTTACTGGACACATGGAAGGAGTAATAGGTTGCTAATGTAAACTCCAGGCAAA
CTGGTGGGTCCTAGGCCCTGACCGTCCACCTGACCTCAGAGCCCATATTGCCTCCGCTTGGGAA
ATCTGCCATGTCCATTTTCACTTGGAAAGGGCTGGTCATTTGAACCCTCCCTTATCAGCCTGTA
CCCCAGAGCTGTGAACTCCTGAGGTACCAACTTCAAAGCCCTACTGGGTATAGATGTGAAAGAC
TATTCCCGACTGGATATCCCTCTACATGGAATTCTTAACAATCTCCTGACCCTTTTACTC

hide sequence

RefSeq Acc Id:

XM_017598789 ⟹ XP_017454278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,730,076 - 45,757,662 (+)	NCBI
mRatBN7.2	13	43,177,858 - 43,205,450 (+)	NCBI
Rnor_6.0	13	48,512,415 - 48,537,130 (+)	NCBI

Sequence:

show sequence

GACAGATTTCACAATGATTTAAGGTGGGGGACAGAGCTGGAAACCCCGTCTCCACTTCAGCTAC
AAGTATTTCAAGGCCTTTGGGGCTTCTAGGCACCATCCATGCCCTTTCACAGGGTGCTCAGAGG
TCCACTGTCCCCCATCTTTAGATCCCCAACCTTCAAAGCAAGAAGCCACAGAGCCCAACCCCTC
AGGTAGCTTCAATGGTGTCCATTGTCCAGGAGGCTGTGTGGCTTGACCCCCAGCCCCATAAGTA
GCAGGACAGCAGGCTCGGAGAAGAATCTGCCTGCTGCCCCTCCTCTGCTGACTACCTTGGGGGA
GTCTGTGGGGTAGTGGCCCCGCTGAATGTGACCTATTGTCTTCTGGTGGATTTAGGAAGTGCCA
AGCTCCCATCAAACAGCCCTGCTCCCCAGGTAAAACAAAAAAAGGGCTGTTCATTTGGGACCTT
TCCCCCTTATCTCCTTTTCCTATCTCCTTAGGCTTAGCTCTGGTGTAGTGTTCAAAACCACTTC
CCCTCCGAGCCAATCAGAAGCCGGGGCTCACCCTCGGCCCTGAGGTGAAGTTATTTATAAACGC
CTCCCTGGATTATTTGAGCAGAGCCCTTTCACACACCTCAGGAACACCTCTCTGCTGCCCGCTG
CCCAGACACACCTGCAGCCCTGCCCAGCCGGCTCTGCTCACCCAGAGTGAGGACCAGAGAGAGA
AGGCCCCAGCCGGCACTGAGAAGGGATGTGCCTCACCTATCCACACTCTGCTTCTCCCAAAGCT
TGTCAATGTCCCAGACATGAGCCAGACCAGGCCCCGCTACGTGGTAGACAGAGCTGCGTACTCC
CTCTCCCTCTTCGATGATGAGTTTGAGAAGAAGGACCGCGCCTACCCGGTGGGAGAGAAACTTC
GCAACACCTTCAGGTGCTCCTCAGCCAAGCTCAAAGCCATTGTGTTTGGACTGTTGCCTGTGCT
CTCCTGGCTCCCCAAGTACAAGATCAAAGACTACATCATCCCTGACTTGCTGGGTGGACTCAGT
GGGGGGTGCATCCAGGTGCCACAAGGCATGGCATTCGCGTTGCTGGCTAACCTTCCTGCCGTCA
ACGGTCTCTACTCCTCCTTCTTCCCCCTCCTAACCTACTTCTTCTTAGGGGGTATACACCAGAT
GGTGCCAGGTACCTTTGCCGTTATCAGCATCCTGGTGGGTAACATCTGTCTGCAGCTGGCCCCA
GAGTCGAAATTCCAGATCTTCAACGCCACCACCAATGAGACCTATGTGGACACAGTGGCCATGG
AGGCAGAAAGGCTGCATGTGTCTGCGACACTGGCCTGCTTGACTGCTGTCATCCAGATGGCCTT
GGGCTTCATGCAGTTTGGCTTCGTTGCCATTTACCTCTCGGAATCCTTTATCCGGGGCTTCATG
ACAGCAGCTGGCCTGCAGATTCTCATCTCTGTGCTAAAATACATCTTTGGTCTGACCATCCCCT
CCTACACGGGCCCCGGCTCCATTGTCTTTACCTTCATTGACATTTGCAAAAACCTCCCCCACAC
CAACATCGCCTCGCTCGTCTTTGCCCTGGTCAGCGGTGTCTTCCTGGTCCTGGTGAAGGAGCTC
AATGCTCGGTACATGCACAAGATCCACTTCCCCATCCCTACAGAGATGATCGTGGTGGTAGTTG
CAACAGCTATCTCTGGGAGCTGCAAGATGCCGAAAAAATATCACATGCAGATTGTGGGGGAGAT
CCGACACGGGTTTCCCATTCCAGTGGCACCAATGGTTTCGCAGTGGAAGGACATGGTGGGCACA
GCCTTCTCCCTGGCAATAGTGGGCTATGTCATCAATCTGGCTATGGGCCGAACCCTGGCCAACA
AGCATGGCTATGACGTCGATTCTAACCAGGAGATGATTGCCCTGGGCTGTAGCAACTTCTTCGG
CTCCTTTTTCAAGATCCATGTCATTTGCTGCGCTCTCTCTGTCACACTGGCTGTGGATGGGGCT
GGAGGGAAGTCCCAGGTGGCAAGCTTGTGTGTGTCTCTGGTGGTGATGATCACCATGTTGGTCC
TGGGATCCTATCTGTACCCTCTCCCCAAGGCTGTACTAGGTGCCCTGATCGCTGTCAACCTCAA
GAACTCCCTGAAGCAACTCACTGACCCCTACTACCTCTGGAGGAAGAGTAAGCTGGACTGCTGC
GTCTGGGTGGTGAGCTTCCTCTCCTCCTTCTTCCTGAGCCTGCCCTATGGCGTTGCAGTGGGTG
TGGCCTTCTCCATCCTGGTTGTGATCTTCCAGACCCAATTTCGAAATGGCTCCACGCTGGCCCA
GGTCATGGACACAGACATCTATGTGAACCCCAAGACCTACAACAGGGTCCAGGAAATTGAGGGA
GTTAAGATTGTCACTTACTGCTCCCCTCTCTACTTTGCCAACTCAGAGATCTTCAGGCAAAAAG
TCATTGCCAAGACAGGTATGGACCCCCAGAAAGTATTACTCGCCAAGCAGAAATATCTCCGGAA
GCAGGAGAAGAGGATGGCAGTGCCCACACAGCAGAGAAAGTCCCTCTTCATGAAAACCAAGACG
GTCTCTCTACAGGAACTCCAACAGGACTTTGAAAGCGCTGCCTCCACAGACCCCAACAACAACC
AAGCTCCTGTGGCCGACGCTCACATATCCTACATCACCTTCAGTCCAGACTCCTCCGCAACTGC
TGCATCCGAGCTGCCCACCTCCACTCAGTCCCCCAGGGAGGCTAGTGATGCTCTGGCCAGCGTG
CCACCCTTCGTTACCTTCCACACTCTCATCCTTGACATGAGTGGAGTCAGCTTTGTGGACCTGA
TGGGCATCAAAGCTCTAGCCAAGCTAAGCTCCACCTATGAGAAGATCGGAGTCCAGATCTTCCT
GGTAAACATCCACGCCCAGGTGTACAATGACATCAGCCAGGGAGGCATCTTTGAAGATGGGTGT
GTACAGCGCAATCACGTGTTCCCCAGCATCCACGATGCAGTCCTCTTCGCCCAGGCAAATGCTA
GAGAAGCCCCAGCCCACAACTTCCAAGGGGCTCCAGGGGACACTGAGTTCTCCTTGTATGACTC
AGAAGAAGATGGCTCCAGTTATTGGGACTTAGAACAGGTGAGTAGAGGGGCAAAAGGTGAGGGA
GGAGAGGGAAGAGAGAAACCCCGCTTCTATCTAAAGGTGTTTGCTGGCTGCTGTCTCCTCCAGT
TCAAAGCTGTAACCTTGGAGGTGGCAAGGTGACACCTGTATTTTAATAATGGATCTTGACTCTT
CTCAGCATCAACACACACACACACACACACACACAC

hide sequence

RefSeq Acc Id:

XM_039090695 ⟹ XP_038946623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,740,038 - 45,757,662 (+)	NCBI
mRatBN7.2	13	43,187,823 - 43,205,450 (+)	NCBI

RefSeq Acc Id:

XM_039090696 ⟹ XP_038946624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,730,022 - 45,750,740 (+)	NCBI
mRatBN7.2	13	43,177,806 - 43,198,526 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100642	(Get FASTA)	NCBI Sequence Viewer
	XP_017454278	(Get FASTA)	NCBI Sequence Viewer
	XP_038946623	(Get FASTA)	NCBI Sequence Viewer
	XP_038946624	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09817	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009742
	ENSRNOP00000009742.4

RefSeq Acc Id:

NP_001100642 ⟸ NM_001107172

- UniProtKB:

D3ZV32 (UniProtKB/TrEMBL), A6IC30 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQTRPRYVVDRAAYSLSLFDDEFEKKDRAYPVGEKLRNTFRCSSAKLKAIVFGLLPVLSWLPK
YKIKDYIIPDLLGGLSGGCIQVPQGMAFALLANLPAVNGLYSSFFPLLTYFFLGGIHQMVPGTF
AVISILVGNICLQLAPESKFQIFNATTNETYVDTVAMEAERLHVSATLACLTAVIQMALGFMQF
GFVAIYLSESFIRGFMTAAGLQILISVLKYIFGLTIPSYTGPGSIVFTFIDICKNLPHTNIASL
VFALVSGVFLVLVKELNARYMHKIHFPIPTEMIVVVVATAISGSCKMPKKYHMQIVGEIRHGFP
IPVAPMVSQWKDMVGTAFSLAIVGYVINLAMGRTLANKHGYDVDSNQEMIALGCSNFFGSFFKI
HVICCALSVTLAVDGAGGKSQVASLCVSLVVMITMLVLGSYLYPLPKAVLGALIAVNLKNSLKQ
LTDPYYLWRKSKLDCCVWVVSFLSSFFLSLPYGVAVGVAFSILVVIFQTQFRNGSTLAQVMDTD
IYVNPKTYNRVQEIEGVKIVTYCSPLYFANSEIFRQKVIAKTGMDPQKVLLAKQKYLRKQEKRM
AVPTQQRKSLFMKTKTVSLQELQQDFESAASTDPNNNQAPVADAHISYITFSPDSSATAASELP
TSTQSPREASDALASVPPFVTFHTLILDMSGVSFVDLMGIKALAKLSSTYEKIGVQIFLVNIHA
QVYNDISQGGIFEDGCVQRNHVFPSIHDAVLFAQANAREAPAHNFQGAPGDTEFSLYDSEEDGS
SYWDLEQEMFGTMFHTETLTAL

hide sequence

RefSeq Acc Id:	XP_017454278 ⟸ XM_017598789
- Peptide Label:	isoform X1
- UniProtKB:	D3ZV32 (UniProtKB/TrEMBL), A6IC30 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQTRPRYVVDRAAYSLSLFDDEFEKKDRAYPVGEKLRNTFRCSSAKLKAIVFGLLPVLSWLPK YKIKDYIIPDLLGGLSGGCIQVPQGMAFALLANLPAVNGLYSSFFPLLTYFFLGGIHQMVPGTF AVISILVGNICLQLAPESKFQIFNATTNETYVDTVAMEAERLHVSATLACLTAVIQMALGFMQF GFVAIYLSESFIRGFMTAAGLQILISVLKYIFGLTIPSYTGPGSIVFTFIDICKNLPHTNIASL VFALVSGVFLVLVKELNARYMHKIHFPIPTEMIVVVVATAISGSCKMPKKYHMQIVGEIRHGFP IPVAPMVSQWKDMVGTAFSLAIVGYVINLAMGRTLANKHGYDVDSNQEMIALGCSNFFGSFFKI HVICCALSVTLAVDGAGGKSQVASLCVSLVVMITMLVLGSYLYPLPKAVLGALIAVNLKNSLKQ LTDPYYLWRKSKLDCCVWVVSFLSSFFLSLPYGVAVGVAFSILVVIFQTQFRNGSTLAQVMDTD IYVNPKTYNRVQEIEGVKIVTYCSPLYFANSEIFRQKVIAKTGMDPQKVLLAKQKYLRKQEKRM AVPTQQRKSLFMKTKTVSLQELQQDFESAASTDPNNNQAPVADAHISYITFSPDSSATAASELP TSTQSPREASDALASVPPFVTFHTLILDMSGVSFVDLMGIKALAKLSSTYEKIGVQIFLVNIHA QVYNDISQGGIFEDGCVQRNHVFPSIHDAVLFAQANAREAPAHNFQGAPGDTEFSLYDSEEDGS SYWDLEQVSRGAKGEGGEGREKPRFYLKVFAGCCLLQFKAVTLEVAR hide sequence

Ensembl Acc Id:

ENSRNOP00000009742 ⟸ ENSRNOT00000009742

RefSeq Acc Id:	XP_038946624 ⟸ XM_039090696
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038946623 ⟸ XM_039090695
- Peptide Label:	isoform X2

Protein Domains

STAS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZV32-F1-model_v2	AlphaFold	D3ZV32	1-790	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698799

Promoter ID:

EPDNEW_R9324

Type:

single initiation site

Name:

Slc26a9_1

Description:

solute carrier family 26 member 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,513,010 - 48,513,070	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310441	AgrOrtholog
BioCyc Gene	G2FUF-18339	BioCyc
Ensembl Genes	ENSRNOG00000029514	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009742	ENTREZGENE
	ENSRNOT00000009742.6	UniProtKB/TrEMBL
Gene3D-CATH	3.30.750.24	UniProtKB/TrEMBL
InterPro	SO4_transptr/STAS	UniProtKB/TrEMBL
	STAS_dom_sf	UniProtKB/TrEMBL
	SulP_transpt	UniProtKB/TrEMBL
	Sulph_transpt	UniProtKB/TrEMBL
KEGG Report	rno:304784	UniProtKB/TrEMBL
NCBI Gene	304784	ENTREZGENE
PANTHER	PTHR11814	UniProtKB/TrEMBL
Pfam	STAS	UniProtKB/TrEMBL
	Sulfate_transp	UniProtKB/TrEMBL
PhenoGen	Slc26a9	PhenoGen
PROSITE	STAS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029514	RatGTEx
Superfamily-SCOP	STAS	UniProtKB/TrEMBL
UniProt	A6IC30	ENTREZGENE, UniProtKB/TrEMBL
	D3ZV32	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc26a9	solute carrier family 26 member 9	Slc26a9	solute carrier family 26 (anion exchanger), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc26a9	solute carrier family 26 (anion exchanger), member 9	Slc26a9	solute carrier family 26, member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc26a9	solute carrier family 26, member 9	Slc26a9_predicted	solute carrier family 26, member 9 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc26a9_predicted	solute carrier family 26, member 9 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD