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Gene: Shprh (SNF2 histone linker PHD RING helicase) Rattus norvegicus

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Symbol:

Shprh

Name:

SNF2 histone linker PHD RING helicase

RGD ID:

1310342

Description:

Predicted to enable ubiquitin protein ligase activity and ubiquitin protein ligase binding activity. Predicted to be involved in DNA damage response and protein polyubiquitination. Predicted to be located in nucleus. Predicted to be part of nucleosome. Orthologous to human SHPRH (SNF2 histone linker PHD RING helicase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase SHPRH; LOC308282; SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHPRH (SNF2 histone linker PHD RING helicase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Shprh (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shprh (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHPRH (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHPRH (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shprh (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHPRH (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHPRH (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shprh (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Shprh (SNF2 histone linker PHD RING helicase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SHPRH (SNF2 histone linker PHD RING helicase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Shprh (SNF2 histone linker PHD RING helicase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	shprh (SNF2 histone linker PHD RING helicase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	IRC20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder)
Drosophila melanogaster (fruit fly):	CG7376	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7376	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T05A12.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shprh	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shprh	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	7,349,073 - 7,422,804 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	7,320,395 - 7,422,794 (+)	Ensembl				GRCr8
mRatBN7.2	1	5,528,827 - 5,602,537 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	5,528,888 - 5,602,527 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	5,223,366 - 5,296,683 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	11,223,727 - 11,297,043 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	5,505,570 - 5,578,887 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	5,240,139 - 5,313,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	5,240,180 - 5,313,054 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	6,890,839 - 6,965,114 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	5,846,062 - 5,922,176 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	4,052,730 - 4,125,310 (+)	NCBI		Celera
RGSC_v3.1	1	5,848,348 - 5,920,472 (+)	NCBI
Cytogenetic Map	1	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Bisphenol A diglycidyl ether (ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diclofenac (ISO)

dimethyl sulfoxide (ISO)

ethanol (ISO)

fenvalerate (EXP)

FR900359 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

methapyrilene (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

theophylline (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (IBA,IEA,ISO)

DNA repair (IEA)

nucleosome assembly (IEA)

protein polyubiquitination (IBA,IEA,ISO)

Cellular Component

nucleosome (IEA)

nucleus (IEA)

Molecular Function

ATP binding (IEA)

DNA binding (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IBA,IEA,ISO)

ubiquitin protein ligase binding (IEA,ISO)

ubiquitin-protein transferase activity (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17108083	PMID:17130289	PMID:18719106	PMID:25023518

Genomics

Comparative Map Data

Shprh
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	7,349,073 - 7,422,804 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	7,320,395 - 7,422,794 (+)	Ensembl				GRCr8
mRatBN7.2	1	5,528,827 - 5,602,537 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	5,528,888 - 5,602,527 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	5,223,366 - 5,296,683 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	11,223,727 - 11,297,043 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	5,505,570 - 5,578,887 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	5,240,139 - 5,313,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	5,240,180 - 5,313,054 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	6,890,839 - 6,965,114 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	5,846,062 - 5,922,176 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	4,052,730 - 4,125,310 (+)	NCBI		Celera
RGSC_v3.1	1	5,848,348 - 5,920,472 (+)	NCBI
Cytogenetic Map	1	p13	NCBI

SHPRH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	145,857,838 - 145,964,358 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	145,864,245 - 145,964,423 (-)	Ensembl			hg38	GRCh38
GRCh37	6	146,205,943 - 146,285,494 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	146,247,636 - 146,326,926 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	146,247,644 - 146,326,926	NCBI
Celera	6	146,946,301 - 147,025,589 (-)	NCBI		Celera
Cytogenetic Map	6	q24.3	NCBI
HuRef	6	143,769,154 - 143,848,446 (-)	NCBI		HuRef
CHM1_1	6	146,469,147 - 146,548,442 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	147,050,896 - 147,157,428 (-)	NCBI		T2T-CHM13v2.0

Shprh
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	11,024,765 - 11,093,339 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	11,025,171 - 11,093,339 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	11,149,272 - 11,217,595 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	11,149,427 - 11,217,595 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	10,869,228 - 10,935,072 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	10,839,714 - 10,899,742 (+)	NCBI		MGSCv36	mm8
Celera	10	11,042,359 - 11,108,579 (+)	NCBI		Celera
Cytogenetic Map	10	A1	NCBI
cM Map	10	3.66	NCBI

Shprh
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	14,698,187 - 14,779,814 (+)	Ensembl
ChiLan1.0	NW_004955436	14,698,210 - 14,779,231 (+)	NCBI	ChiLan1.0	ChiLan1.0

SHPRH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	165,834,282 - 165,960,315 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	163,726,878 - 163,852,928 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	143,628,076 - 143,751,370 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	148,386,451 - 148,466,127 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	148,388,329 - 148,457,023 (-)	Ensembl			panPan2	panpan1.1

SHPRH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	37,076,318 - 37,170,664 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	37,077,949 - 37,163,041 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	37,968,302 - 38,062,480 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	37,251,183 - 37,345,842 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	37,251,283 - 37,345,584 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	37,130,002 - 37,224,154 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	36,994,480 - 37,088,876 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	37,318,130 - 37,412,330 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Shprh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	132,016,323 - 132,101,684 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936625	533,849 - 617,907 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936625	533,870 - 617,936 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHPRH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	19,612,916 - 19,695,245 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	19,612,915 - 19,697,444 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	21,856,641 - 21,938,994 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHPRH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	25,878,354 - 25,959,922 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	25,878,223 - 25,959,942 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	201,841,974 - 201,925,239 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shprh
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	8,507,066 - 8,580,214 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624753	8,498,335 - 8,580,333 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Shprh
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	225,993,260 - 226,058,970 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Shprh
527 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	149
Count of miRNA genes:	121
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000019893
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	1	26564886	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	5293229	34184556	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
70179	Xhs2	X-ray hypersensitivity QTL 2	3.2		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	1	1	43965634	Rat
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	26564886	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	1	34184556	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	1	28483164	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	5293229	34184556	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	5293229	34184556	Rat

Markers in Region

BE105044

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	5,558,970 - 5,559,140 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	5,270,029 - 5,270,198	NCBI	Rnor6.0
Rnor_5.0	1	6,921,102 - 6,921,271	UniSTS	Rnor5.0
RGSC_v3.4	1	5,876,242 - 5,876,411	UniSTS	RGSC3.4
Celera	1	4,082,671 - 4,082,840	UniSTS
RH 3.4 Map	1	105.42	UniSTS
Cytogenetic Map	1	p13	UniSTS

RH127759

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	5,526,956 - 5,527,128 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	56,881,357 - 56,881,537 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,098,979 - 58,099,158	NCBI	Rnor6.0
Rnor_6.0	1	5,238,249 - 5,238,420	NCBI	Rnor6.0
Rnor_5.0	5	62,623,090 - 62,623,269	UniSTS	Rnor5.0
Rnor_5.0	1	6,889,322 - 6,889,493	UniSTS	Rnor5.0
RGSC_v3.4	1	5,844,131 - 5,844,302	UniSTS	RGSC3.4
RGSC_v3.4	5	59,139,697 - 59,139,876	UniSTS	RGSC3.4
Celera	5	55,475,410 - 55,475,589	UniSTS
Celera	1	4,050,799 - 4,050,970	UniSTS
Cytogenetic Map	1	p13	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH135342

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	5,601,995 - 5,602,187 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	5,312,523 - 5,312,714	NCBI	Rnor6.0
Rnor_5.0	1	6,964,573 - 6,964,764	UniSTS	Rnor5.0
RGSC_v3.4	1	5,921,636 - 5,921,827	UniSTS	RGSC3.4
Celera	1	4,124,770 - 4,124,961	UniSTS
RH 3.4 Map	1	103.52	UniSTS
Cytogenetic Map	1	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019893 ⟹ ENSRNOP00000019893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	7,349,158 - 7,422,794 (+)	Ensembl
mRatBN7.2 Ensembl	1	5,528,888 - 5,602,527 (+)	Ensembl
Rnor_6.0 Ensembl	1	5,240,180 - 5,313,054 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088292 ⟹ ENSRNOP00000071936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	7,349,201 - 7,422,793 (+)	Ensembl
mRatBN7.2 Ensembl	1	5,528,888 - 5,602,527 (+)	Ensembl
Rnor_6.0 Ensembl	1	5,240,197 - 5,313,041 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111484 ⟹ ENSRNOP00000084462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	7,320,395 - 7,422,793 (+)	Ensembl
mRatBN7.2 Ensembl	1	5,528,888 - 5,602,527 (+)	Ensembl

RefSeq Acc Id:

NM_001107470 ⟹ NP_001100940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	7,349,158 - 7,422,803 (+)	NCBI
mRatBN7.2	1	5,528,888 - 5,602,536 (+)	NCBI
Rnor_6.0	1	5,240,180 - 5,313,063 (+)	NCBI
Rnor_5.0	1	6,890,839 - 6,965,114 (+)	NCBI
RGSC_v3.4	1	5,846,062 - 5,922,176 (+)	RGD
Celera	1	4,052,730 - 4,125,310 (+)	RGD

Sequence:

show sequence

AGCTGGTGCTGTGGCTTCCGGCCCCGGGCGCGCAACTCCACCCAGAGTGCAGCGCGCGTGCGCA
ACTCCGGCAGGTGTGTGAAGCGACTGTCCGCCCGGGATCTGCAGGCTCCGAGGAGGGCCGGTCC
TCGCGACTGGTGCTCGTATAGCGGTTGAGAATTCACGTTTACCAACCAAGAAAGGGAAAGCTCG
AGGATGAGTAGCCGAAGGAAACGTGCTCCCCCGATGAAGGTGGATGAAGAAAGGCAGCAGCAGC
TTCGCTGGAACATGCACGAGGACCTGAGGAATGAGCCGCTCAGCTTGACTGAGGAAGAGCGGGC
CTGCTGGGATGCAGACTCCTCCGATTGCATCATCATAGATGATGACCCTCCCGAAGGTGCAGCT
CACAGAGATAAGAAGAGGTGTACAGAGTCTGTGAGCATCTTAAACTCCACTGAAAAAGAGACCC
CTCTGTCCGTGGCCTTGAATGTTACCATTTCTCCCCATCCTTCCGATGATTCTTGGAAAGCGTT
TCTGGGAGATTTTGTGCTTCAGCTTCTCCCTGAAGAGAGTTTAGTTGAACATTTTTCTGAAAGG
ACTTTTACGTTGATGAGTTCAGAGTCAAGCAGTCAGCTCCTGATCTATGTTCATTCAGAATGTA
ACAATGTGGAGAAAGAAGAAAACGTACTTAAAGGACCAGCAAGTATCTATGGCAAGGGTATTCG
AGTGGAATCCTCCTTCAGTAGTGACATGTTACAGGATTTGGCCTGGCTACAGAAGAGAAGAGGA
ATAAAACTCTACCAGCGACCAGAAGGAACTCATACGATCAAGGTTAGAATTTACCTCTTGGAAG
CTGGCCTGACAAGACTAGACTTCATGAGTGATGCAGGCTCCAGAATGAAAAAGTTCAATCAGCT
CCTGAAGAGAGTGATGGGAAAGTTATACAGTCTCAGTATTCCAGATGTGTTGGAAGAAGATGAG
GAGGAATCAGAGAGTGAGCCAGAGGGCCAGGACATTGATGAGCTCTATCAGTTTGTGAAGCGAA
CACACCAGCAAGAGGCAAAGTCAGTCCAAGTGGATGTCCAGCACCCTGCACTGATTCCGGTGCT
GAGGCCGTACCAGAGAGAGGCAGTCAACTGGATGCTACAGCAGGAGCAGTTCAGGAGCACTCCT
GCTGATAACTCCCTGCACTTCTTGTGGCGAGAAATTGTTACACCTGATGGCTTGAACCTCTACT
ATAATCCGTACACAGGCTGCATCATTCGGGACTTCCCACATGCTGGGCCACAGTTGCTCGGTGG
AATCTTAGCAGATGAGATGGGCCTCGGGAAGACAGTGGAGGTTCTGGCTCTGATTCTGACTCAT
ACCCGACAAGATGTCAGACAGGATGCCCTCACCCTGCCTGAGGGAAAAGTGGTAAATTATTTCA
TCCCAACTCATTGTCCTAGAGGAAAAGTGAAAAGTAGAGAAATCCAGAATACAGAGTGTGAACC
AAAAGAGAAAGTTCACTGCCCTCCCACACGTGTGATGATTCTGACAGCTGTGAAAGAAATGAAT
GGGAAAAAAGGCGTTTCTATTCTTTCTATCTATAAGTATGTCAGCTCCACATTCAGATACGACG
TTCAGCGGAACCGGAGTCTTCTGAAGCGGATGTTGAAATGTTTAATCTTTGAAGGTCTTGTGAA
ACAGATTAAAGGCCGTGGTTTCTCTGGGACTTTTACACTGGGAAAGAATTACAAAGAAGATGTA
TTTGATAAAACGAAAAAGCAGGCAGTAGGGAGTCCACAAAAAATTGAGAAAGAGTTAAGGAAAT
CAGTGAACAAGGATACAGATTCTGAATACATGCCATCAGACATTTATGATGACGATAATGACAA
CGACGATGACGACGACGATGATCCTTATTATTATTACTGCAAGGCAAGAAAAAGCCGTAAGTTG
AAGAAGAAGCCTGTGTTACTCACTAAAAAGGAAAAGGGTCAGCCTGTCAATCTGGATTCCCAAG
TTGAGGCTCCAGCTGCTGGTGACTGTGCAAGCGCCGATGCTCATGTGTCAGAAAGTACATGTGT
CTCTGAAAACAGGCAGATCCAAGACGCAGAGGACTGTGTTGAGTCTCCAAGCCCGGCCGCCATG
GAGCTGGCACAGTCTAACACTGCAAGTTTCTGTGAGACCCCTGACTACCGCTTTGAGTGTATAT
GTGGTGAATTTGACCAGATCGGCCGCAAGCCAAGAGTTCAGTGTCTGAAGTGTCACCTGTGGCA
GCATGCAAAGTGTGTGAATTACGAGGAGAAGAATCTGAAGGTTAAGCCTTTTTACTGCCCTCAT
TGCCTGGTTGCAATGGAGCCAGTGTCAACCAGAGCGACTCTCATCATCTCCCCAAGCTCCATTT
GCCACCAGTGGGTAGATGAAATCAACCGGCACGTGAGATCGTCATCCCTTCGAGTTTTGGTATA
TCAAGGAGTGAAGAAAGATGGGTTCTTACAGCCTCATTTTTTGGCAGAACAAGATATAGTTATC
ATTACCTATGATGTTCTCCGTTCAGAATTAAACTATGTCGATATCCCACATAGCAATAGTGAAG
ATGGGCGTCGCCTGAGGAACCAGAAGCGCTACATGGCCATTCCCAGCCCCCTGGTAGCGGTGGA
GTGGTGGCGGATCTGTCTGGATGAAGCGCAGATGGTCGAGTGTCCTACAGTAAAAGCTGCAGAA
ATGGCCCAGCGTTTGAGTGGCATTAATCGGTGGTGTGTCAGTGGCACTCCAGTGCAGAGAGGAT
TGGAAGATCTTTTTGGGCTGGTGGTCTTTCTTGGGATTGAACCTTATTGTGTCAAACACTGGTG
GATTCGACTTCTCTATCATCCATACTGCAAGAAAAATCCTCAACACCTGTACAGTTTTATTGCT
AAGATAATGTGGAGGTCCGCAAAGAAAGATGTCATTGACCAAATCCAGATCCCACCTCAGACTG
AAGAAATGCACTGGCTCCATTTTTCCCCTGTGGAGAGGCATTTCTACCACCGCCAGCATGAGGT
GTGCTGCCAGGATGCTGTGGTAAAGCTCAGGAAGATCTCGGACTGGGCCCTGAAGCTGAGCAGC
TTGGACAGAAGGACGGTCTCCTCCATCCTGTACCCCCTGCTGAGACTCAGGCAGGCCTGCTGCC
ACCCACAGGCTGTGCGTGGGGAGTTCCTGCCACTCCAGAAGAGCACCATGACGATGGAGGAGTT
GCTGACATCTTTGCAGAAGAAGTGTGGAACAGAGTGTGAAGAGGCCCACCGGCAGCTAGTTTGT
GCCCTTAACGGCTTAGCAGGCATCCACATCATTAAAGGTAGAAGAGCACAGTACAGAGCAGCCC
TTGCTTTGCCTCCCCCAGAATGTGTCATTCTTAGTGAATACGCCTTGGCAGCGGAACTCTACAG
AGAAGTTTTAAGGTCGTCTGAGGAGCACAAAGGAAAACTCAAAACTGATTCACTTCAAAGACTT
CACGCCACACATAACCTGATGGAGCTCCTGGTAGCCAAACACCCAGGGATACCGCCCACCCTGA
GAGATGGCAGACTTGAAGAAGAGGCCAAGCAGCTCCGAGAGCACTACATGAGCAAGTGTAACAC
AGAGGTGGCCGAAGCCCAGCAAGCTTTGCAGCCTGTGCAGCAGTCCATTCGGGAGCTCCAAAGG
AAGGTTCATTCTGGTTCTCCTTGGTGGCTGAATGTAGTTCACAGAGCAATGGAGTATGCTGTTG
ACGAGGAGCTTGTTCAGCGCGTGCGAAATGAGATAAGCAGTAACTACAAGCACCAAACGGACAA
ACTCTCCATGTCAGAGAAGTTCCGTGACTGTAGAGGTCTTCAGTTCTTACTTACAACACAAATG
GAAGAGCTGCACAAGTTCCAGAAGCTAGTGAGGGAGGCTGTGAAGAAGCTGGAGAAACCTCCGT
CCCGGGATGTGATTGAGTCTGCAACAGTTTGCCACCTGCGGCCAGCTAGACTCCCTCTCAACTG
CTGTGTCTTTTGTAAAGCTGATGAATTGTTCACAGAGTATGAGTCAAAGCTATTTTCTAACACT
GTCAAAGGCCAGACCGCCATCTTTGAAGAAATGATAGAAGATGAAGAAGGACTCGTGGATGATA
GAGTCCCTACCACTACCAGAGGCCTGTGGGCCGTGAGCGAGACGGAGCGATCTATGAAAGCAAT
ACTATCATTTGCAAGATCACATAGGTTTGACGTTGAATATATAGATGAAGGAAGTGTTTCAATG
GATCTCTTCGAGGCATGGAAGAAGGAGTATAAGTTACTTCATGAATACTGGATGACTCTGAGAA
ACCGCGTATCCGCTGTTGATGAACTTGCAATGGCTACAGAGCGACTAAGAGTGCGCCATCCCAA
GGAGCCAAAGCCAAACCCACCCGTCCACCACATCATTGAACCACACGAGGTTGAACAGAATCGT
ATAAAACTAGTAAATGATAAAGCTGTTGCTACTTCCCAGCTTCAGAAGAAACTTGGACAGCTTC
TTTACCTGACAAATTTGGAGAAGTCTCAGGACAAAACATCAGGAGGTATTAATCCAGAGCCTTG
TCCGATCTGTGCTCGGCAGTTGGGAAAACAGTGGGCAGTGCTGACCTGCGGACACTGCTTCTGT
AATGAATGCACTTCAATTATAATTGAACAATACAGTGTGGGATCCCATCGAAGCTCCATTAAGT
GTGCTATCTGCCGCCAGACCACATCACACAAAGAAGTCTCCTATGTCTTCACTTCAGAGAAGGC
AAACCAAGAGGATGATATCCCTGTGAAGGGTAGCCATTCTACAAAAGTGGAAGCTGTGGTCAGA
ACTCTGATGAAAATACAACTTAAAGATCCGGGGGCCAAAGCGCTCGTTTTCTCAACGTGGCAAG
ATGTGTTAGATATTATTTCAAAAGCTCTCACGGACAACAACATGGGATTCACACAAATCAGTCG
CATTAAGACATTCCAGGAGAACCTTTCAGCATTTAAATATGATCCCCAGATCAATATTTTGCTG
CTGCCCCTGCATACAGGCTCTAATGGATTAACTATCATTGAAGCCACTCATGTCCTCCTGGTGG
AACCGATACTGAATCCTGCCCATGAGCTTCAGGCCATTGGGAGAGTGCACCGAATTGGACAGAC
AAAACCTACTATTGTACATAGATTCTTAATTAAAGCAACAATAGAAGAGCGGATGCAGGCAATG
CTAAAGACTGCTGAGAGGAGCCACACCAGCTCGTCTGGGAAGCATTCTGAAGCCTCTGCACTGA
CCGTGGCTGACCTGGCAGACCTGTTCACCAAAGAGAGTGAGGAGCTTGAATGAAGCGCCATCGC
GTCATTGCACGGATGTTCAGACTTAGCTCTCACAGATGTAAAGCAAGCTTACAAAGTTAAGATC
AGTAACCATTAGTAGATACTATTTTAATGAATTGATTTTGTTATACACCAGCCTAGTAATAATT
GGCAATTGGTTCCTTTTCAGTAAACCTATTTCACACCATTTACAATGAATTTTAATTTTACATT
CCTACTGAAACATTTACTTTTTGTTCTACATGTATATCTATAACTGATAAGGCAGGAGAATTTA
AAAAAGAAGGTATTAAATAATTTTTCATTAGTAGATAGATGTTTGTTATAACAAGACAGAATAC
ATAAGAAAGAAGGTAAATTAGTCTAGTTTTGTATGACCTGACCTACACAGCCAGTGTAAATGAC
ATTTTTGAAAGGGCCTTTGGCATCTTTAGCTTATGATTCATCATTCTCTTCTCGGTAGTGTTTT
AAGAAGACGCTAAACTATGATACCTAGTTGTTTGCATGAGTTTAAACTGTAACACTCTCTTTGG
AACTTTAAGTAGTACAGCTCCTGATCATAAATTCTTAGGTGGTTATTTTGTGTCTTGTTACTAG
CCGTCAAAATACTGAAAAGCTCATTTTTCTATTATGTTTAAGCCGTGTCATTGTTAGTGTTTTT
AAGTGTATTAACATTTACCTACAATGATCTCTTTAATCTTTGTAGTGAGTTCTTTTTGTGTTTT
AAGATGATGTATCTGTAAATAGGGCTTTTTTAAAATCATCATTGTACTGAATTCTTTCCCTGTG
TTCCTGTAACTAATCATTTTAGCCGGTAATTATCTAAGTTTACAGTAGAGTTTATTCATTTCAG
TTACTCTGTCATTAAGTATTTTATCTTACTGCAAGAGAATGCTGTGTTCACACATGCATAGAAC
TATAAGTGGTTAAACTGTCTCTTCTGTGAAGACTTCATAGATGACTTTGAAATCACAAAATAAG
AAGTAGCTTGTATCCTAACCCTGTGTTGAAATATAAATGTTCTTGTTTTCCTTCCTTTAGCTGT
TGAAGTTTTAAGTGACTCTCGAGATTCATTAGCTCCTACCTAACTGCCCAGGAAGCTGTACTAG
AAATAGTCCCTGGAGCTCCTTCATCCATTGAGCTTGGTGCTTAAGCTAAGGTGCATTTTCCTAT
CCGGGTTTATAGGTGACAGCTCAGCTGAGGAAGACACATTCTGGGTGCTTATTCCTTAGTGAAG
GGAGATATGCATTGGTTCTTTTATATGAGATTAAACATAATATTTTTACAGCTCTTTGACATCC
ATGAAGAGCTTTTCTGTGTATTAATGTAGTTAATTTTCCCAACCGTCCTGTGAAGTGGACATAA
TTAAAGTCATTCCTGTTGTGAAGGTAAGGAGCGAATGCTCAGGAGGAATCTTGGCTATGATATG
TAGCAAATAGACAGAGGAGTCCAGGCCCTGGCTTCATGTCTGCTTTTCTTCCACCAAATCGTGT
CATGCTGAGGTCCAGAAGCCTCAGAGGTGTAATTTAGGGGTGCGATTGTTGAGGTTTTTCTTTT
TCCTAATATTTCATGTGCTATGTTCTAGGAAAAGCAATCTGATATGCTTCAATTAAAAAAATAA
CATAAATAGATATCTGTACTTATTAGTATTAGAAAAACTACTCTTATTTATTTCAGTAAGATAC
CTCAAATAAATATTTTAGTGAAAAATGAA

hide sequence

RefSeq Acc Id:

XM_006227639 ⟹ XP_006227701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	7,349,073 - 7,422,804 (+)	NCBI
mRatBN7.2	1	5,528,829 - 5,602,537 (+)	NCBI
Rnor_6.0	1	5,240,139 - 5,313,064 (+)	NCBI
Rnor_5.0	1	6,890,839 - 6,965,114 (+)	NCBI

Sequence:

show sequence

CCGGTCCTGCGCGTGGAGCGGGCGCTCCCGCTGTCCTCCTCAGCTGGTGCTGTGGCTTCCGGCC
CCGGGCGCGCAACTCCACCCAGAGTGCAGCGCGCGTGCGCAACTCCGGCAGGTGTGTGAAGCGA
CTGTCCGCCCGGGATCTGCAGGCTCCGAGGAGGGCCGGTCCTCGCGACTGGTGCTCGTATAGCG
GTTGAGAATTCACGTTTACCAACCAAGAAAGGGAAAGCTCGAGGATGAGTAGCCGAAGGAAACG
TGCTCCCCCGATGAAGGTGGATGAAGAAAGGCAGCAGCAGCTTCGCTGGAACATGCACGAGGAC
CTGAGGAATGAGCCGCTCAGCTTGACTGAGGAAGAGCGGGCCTGCTGGGATGCAGACTCCTCCG
ATTGCATCATCATAGATGATGACCCTCCCGAAGGTGCAGCTCACAGAGATAAGAAGAGGTGTAC
AGAGTCTGTGAGCATCTTAAACTCCACTGAAAAAGAGACCCCTCTGTCCGTGGCCTTGAATGTT
ACCATTTCTCCCCATCCTTCCGATGATTCTTGGAAAGCGTTTCTGGGAGATTTTGTGCTTCAGC
TTCTCCCTGAAGAGAGTTTAGTTGAACATTTTTCTGAAAGGACTTTTACGTTGATGAGTTCAGA
GTCAAGCAGTCAGCTCCTGATCTATGTTCATTCAGAATGTAACAATGTGGAGAAAGAAGAAAAC
GTACTTAAAGGACCAGCAAGTATCTATGGCAAGGGTATTCGAGTGGAATCCTCCTTCAGTAGTG
ACATGTTACAGGATTTGGCCTGGCTACAGAAGAGAAGAGGAATAAAACTCTACCAGCGACCAGA
AGGAACTCATACGATCAAGGTTAGAATTTACCTCTTGGAAGCTGGCCTGACAAGACTAGACTTC
ATGAGTGATGCAGGCTCCAGAATGAAAAAGTTCAATCAGCTCCTGAAGAGAGTGATGGGAAAGT
TATACAGTCTCAGTATTCCAGATGTGTTGGAAGAAGATGAGGAGGAATCAGAGAGTGAGCCAGA
GGGCCAGGACATTGATGAGCTCTATCAGTTTGTGAAGCGAACACACCAGCAAGAGGCAAAGTCA
GTCCAAGTGGATGTCCAGCACCCTGCACTGATTCCGGTGCTGAGGCCGTACCAGAGAGAGGCAG
TCAACTGGATGCTACAGCAGGAGCAGTTCAGGAGCACTCCTGCTGGTGATAACTCCCTGCACTT
CTTGTGGCGAGAAATTGTTACACCTGATGGCTTGAACCTCTACTATAATCCGTACACAGGCTGC
ATCATTCGGGACTTCCCACATGCTGGGCCACAGTTGCTCGGTGGAATCTTAGCAGATGAGATGG
GCCTCGGGAAGACAGTGGAGGTTCTGGCTCTGATTCTGACTCATACCCGACAAGATGTCAGACA
GGATGCCCTCACCCTGCCTGAGGGAAAAGTGGTAAATTATTTCATCCCAACTCATTGTCCTAGA
GGAAAAGTGAAAAGTAGAGAAATCCAGAATACAGAGTGTGAACCAAAAGAGAAAGTTCACTGCC
CTCCCACACGTGTGATGATTCTGACAGCTGTGAAAGAAATGAATGGGAAAAAAGGCGTTTCTAT
TCTTTCTATCTATAAGTATGTCAGCTCCACATTCAGATACGACGTTCAGCGGAACCGGAGTCTT
CTGAAGCGGATGTTGAAATGTTTAATCTTTGAAGGTCTTGTGAAACAGATTAAAGGCCGTGGTT
TCTCTGGGACTTTTACACTGGGAAAGAATTACAAAGAAGATGTATTTGATAAAACGAAAAAGCA
GGCAGTAGGGAGTCCACAAAAAATTGAGAAAGAGTTAAGGAAATCAGTGAACAAGGATACAGAT
TCTGAATACATGCCATCAGACATTTATGATGACGATAATGACAACGACGATGACGACGACGATG
ATCCTTATTATTATTACTGCAAGGCAAGAAAAAGCCGTAAGTTGAAGAAGAAGCCTGTGTTACT
CACTAAAAAGGAAAAGGGTCAGCCTGTCAATCTGGATTCCCAAGTTGAGGCTCCAGCTGCTGGT
GACTGTGCAAGCGCCGATGCTCATGTGTCAGAAAGTACATGTGTCTCTGAAAACAGGCAGATCC
AAGACGCAGAGGACTGTGTTGAGTCTCCAAGCCCGGCCGCCATGGAGCTGGCACAGTCTAACAC
TGCAAGTTTCTGTGAGACCCCTGACTACCGCTTTGAGTGTATATGTGGTGAATTTGACCAGATC
GGCCGCAAGCCAAGAGTTCAGTGTCTGAAGTGTCACCTGTGGCAGCATGCAAAGTGTGTGAATT
ACGAGGAGAAGAATCTGAAGGTTAAGCCTTTTTACTGCCCTCATTGCCTGGTTGCAATGGAGCC
AGTGTCAACCAGAGCGACTCTCATCATCTCCCCAAGCTCCATTTGCCACCAGTGGGTAGATGAA
ATCAACCGGCACGTGAGATCGTCATCCCTTCGAGTTTTGGTATATCAAGGAGTGAAGAAAGATG
GGTTCTTACAGCCTCATTTTTTGGCAGAACAAGATATAGTTATCATTACCTATGATGTTCTCCG
TTCAGAATTAAACTATGTCGATATCCCACATAGCAATAGTGAAGATGGGCGTCGCCTGAGGAAC
CAGAAGCGCTACATGGCCATTCCCAGCCCCCTGGTAGCGGTGGAGTGGTGGCGGATCTGTCTGG
ATGAAGCGCAGATGGTCGAGTGTCCTACAGTAAAAGCTGCAGAAATGGCCCAGCGTTTGAGTGG
CATTAATCGGTGGTGTGTCAGTGGCACTCCAGTGCAGAGAGGATTGGAAGATCTTTTTGGGCTG
GTGGTCTTTCTTGGGATTGAACCTTATTGTGTCAAACACTGGTGGATTCGACTTCTCTATCATC
CATACTGCAAGAAAAATCCTCAACACCTGTACAGTTTTATTGCTAAGATAATGTGGAGGTCCGC
AAAGAAAGATGTCATTGACCAAATCCAGATCCCACCTCAGACTGAAGAAATGCACTGGCTCCAT
TTTTCCCCTGTGGAGAGGCATTTCTACCACCGCCAGCATGAGGTGTGCTGCCAGGATGCTGTGG
TAAAGCTCAGGAAGATCTCGGACTGGGCCCTGAAGCTGAGCAGCTTGGACAGAAGGACGGTCTC
CTCCATCCTGTACCCCCTGCTGAGACTCAGGCAGGCCTGCTGCCACCCACAGGCTGTGCGTGGG
GAGTTCCTGCCACTCCAGAAGAGCACCATGACGATGGAGGAGTTGCTGACATCTTTGCAGAAGA
AGTGTGGAACAGAGTGTGAAGAGGCCCACCGGCAGCTAGTTTGTGCCCTTAACGGCTTAGCAGG
CATCCACATCATTAAAGGTGAATACGCCTTGGCAGCGGAACTCTACAGAGAAGTTTTAAGGTCG
TCTGAGGAGCACAAAGGAAAACTCAAAACTGATTCACTTCAAAGACTTCACGCCACACATAACC
TGATGGAGCTCCTGGTAGCCAAACACCCAGGGATACCGCCCACCCTGAGAGATGGCAGACTTGA
AGAAGAGGCCAAGCAGCTCCGAGAGCACTACATGAGCAAGTGTAACACAGAGGTGGCCGAAGCC
CAGCAAGCTTTGCAGCCTGTGCAGCAGTCCATTCGGGAGCTCCAAAGGAAGGTTCATTCTGGTT
CTCCTTGGTGGCTGAATGTAGTTCACAGAGCAATGGAGTATGCTGTTGACGAGGAGCTTGTTCA
GCGCGTGCGAAATGAGATAAGCAGTAACTACAAGCACCAAACGGACAAACTCTCCATGTCAGAG
AAGTTCCGTGACTGTAGAGGTCTTCAGTTCTTACTTACAACACAAATGGAAGAGCTGCACAAGT
TCCAGAAGCTAGTGAGGGAGGCTGTGAAGAAGCTGGAGAAACCTCCGTCCCGGGATGTGATTGA
GTCTGCAACAGTTTGCCACCTGCGGCCAGCTAGACTCCCTCTCAACTGCTGTGTCTTTTGTAAA
GCTGATGAATTGTTCACAGAGTATGAGTCAAAGCTATTTTCTAACACTGTCAAAGGCCAGACCG
CCATCTTTGAAGAAATGATAGAAGATGAAGAAGGACTCGTGGATGATAGAGTCCCTACCACTAC
CAGAGGCCTGTGGGCCGTGAGCGAGACGGAGCGATCTATGAAAGCAATACTATCATTTGCAAGA
TCACATAGGTTTGACGTTGAATATATAGATGAAGGAAGTGTTTCAATGGATCTCTTCGAGGCAT
GGAAGAAGGAGTATAAGTTACTTCATGAATACTGGATGACTCTGAGAAACCGCGTATCCGCTGT
TGATGAACTTGCAATGGCTACAGAGCGACTAAGAGTGCGCCATCCCAAGGAGCCAAAGCCAAAC
CCACCCGTCCACCACATCATTGAACCACACGAGGTTGAACAGAATCGTATAAAACTAGTAAATG
ATAAAGCTGTTGCTACTTCCCAGCTTCAGAAGAAACTTGGACAGCTTCTTTACCTGACAAATTT
GGAGAAGTCTCAGGACAAAACATCAGGAGGTATTAATCCAGAGCCTTGTCCGATCTGTGCTCGG
CAGTTGGGAAAACAGTGGGCAGTGCTGACCTGCGGACACTGCTTCTGTAATGAATGCACTTCAA
TTATAATTGAACAATACAGTGTGGGATCCCATCGAAGCTCCATTAAGTGTGCTATCTGCCGCCA
GACCACATCACACAAAGAAGTCTCCTATGTCTTCACTTCAGAGAAGGCAAACCAAGAGGATGAT
ATCCCTGTGAAGGGTAGCCATTCTACAAAAGTGGAAGCTGTGGTCAGAACTCTGATGAAAATAC
AACTTAAAGATCCGGGGGCCAAAGCGCTCGTTTTCTCAACGTGGCAAGATGTGTTAGATATTAT
TTCAAAAGCTCTCACGGACAACAACATGGGATTCACACAAATCAGTCGCATTAAGACATTCCAG
GAGAACCTTTCAGCATTTAAATATGATCCCCAGATCAATATTTTGCTGCTGCCCCTGCATACAG
GCTCTAATGGATTAACTATCATTGAAGCCACTCATGTCCTCCTGGTGGAACCGATACTGAATCC
TGCCCATGAGCTTCAGGCCATTGGGAGAGTGCACCGAATTGGACAGACAAAACCTACTATTGTA
CATAGATTCTTAATTAAAGCAACAATAGAAGAGCGGATGCAGGCAATGCTAAAGACTGCTGAGA
GGAGCCACACCAGCTCGTCTGGGAAGCATTCTGAAGCCTCTGCACTGACCGTGGCTGACCTGGC
AGACCTGTTCACCAAAGAGAGTGAGGAGCTTGAATGAAGCGCCATCGCGTCATTGCACGGATGT
TCAGACTTAGCTCTCACAGATGTAAAGCAAGCTTACAAAGTTAAGATCAGTAACCATTAGTAGA
TACTATTTTAATGAATTGATTTTGTTATACACCAGCCTAGTAATAATTGGCAATTGGTTCCTTT
TCAGTAAACCTATTTCACACCATTTACAATGAATTTTAATTTTACATTCCTACTGAAACATTTA
CTTTTTGTTCTACATGTATATCTATAACTGATAAGGCAGGAGAATTTAAAAAAGAAGGTATTAA
ATAATTTTTCATTAGTAGATAGATGTTTGTTATAACAAGACAGAATACATAAGAAAGAAGGTAA
ATTAGTCTAGTTTTGTATGACCTGACCTACACAGCCAGTGTAAATGACATTTTTGAAAGGGCCT
TTGGCATCTTTAGCTTATGATTCATCATTCTCTTCTCGGTAGTGTTTTAAGAAGACGCTAAACT
ATGATACCTAGTTGTTTGCATGAGTTTAAACTGTAACACTCTCTTTGGAACTTTAAGTAGTACA
GCTCCTGATCATAAATTCTTAGGTGGTTATTTTGTGTCTTGTTACTAGCCGTCAAAATACTGAA
AAGCTCATTTTTCTATTATGTTTAAGCCGTGTCATTGTTAGTGTTTTTAAGTGTATTAACATTT
ACCTACAATGATCTCTTTAATCTTTGTAGTGAGTTCTTTTTGTGTTTTAAGATGATGTATCTGT
AAATAGGGCTTTTTTAAAATCATCATTGTACTGAATTCTTTCCCTGTGTTCCTGTAACTAATCA
TTTTAGCCGGTAATTATCTAAGTTTACAGTAGAGTTTATTCATTTCAGTTACTCTGTCATTAAG
TATTTTATCTTACTGCAAGAGAATGCTGTGTTCACACATGCATAGAACTATAAGTGGTTAAACT
GTCTCTTCTGTGAAGACTTCATAGATGACTTTGAAATCACAAAATAAGAAGTAGCTTGTATCCT
AACCCTGTGTTGAAATATAAATGTTCTTGTTTTCCTTCCTTTAGCTGTTGAAGTTTTAAGTGAC
TCTCGAGATTCATTAGCTCCTACCTAACTGCCCAGGAAGCTGTACTAGAAATAGTCCCTGGAGC
TCCTTCATCCATTGAGCTTGGTGCTTAAGCTAAGGTGCATTTTCCTATCCGGGTTTATAGGTGA
CAGCTCAGCTGAGGAAGACACATTCTGGGTGCTTATTCCTTAGTGAAGGGAGATATGCATTGGT
TCTTTTATATGAGATTAAACATAATATTTTTACAGCTCTTTGACATCCATGAAGAGCTTTTCTG
TGTATTAATGTAGTTAATTTTCCCAACCGTCCTGTGAAGTGGACATAATTAAAGTCATTCCTGT
TGTGAAGGTAAGGAGCGAATGCTCAGGAGGAATCTTGGCTATGATATGTAGCAAATAGACAGAG
GAGTCCAGGCCCTGGCTTCATGTCTGCTTTTCTTCCACCAAATCGTGTCATGCTGAGGTCCAGA
AGCCTCAGAGGTGTAATTTAGGGGTGCGATTGTTGAGGTTTTTCTTTTTCCTAATATTTCATGT
GCTATGTTCTAGGAAAAGCAATCTGATATGCTTCAATTAAAAAAATAACATAAATAGATATCTG
TACTTATTAGTATTAGAAAAACTACTCTTATTTATTTCAGTAAGATACCTCAAATAAATATTTT
AGTGAAAAATGAAA

hide sequence

RefSeq Acc Id:

XM_063288635 ⟹ XP_063144705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	7,349,073 - 7,379,154 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100940	(Get FASTA)	NCBI Sequence Viewer
	NP_001424746	(Get FASTA)	NCBI Sequence Viewer
	XP_006227701	(Get FASTA)	NCBI Sequence Viewer
	XP_063144705	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93714	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019893.5
	ENSRNOP00000071936
	ENSRNOP00000071936.3
	ENSRNOP00000084462.2

RefSeq Acc Id:

NP_001100940 ⟸ NM_001107470

- Sequence:

show sequence

MSSRRKRAPPMKVDEERQQQLRWNMHEDLRNEPLSLTEEERACWDADSSDCIIIDDDPPEGAAH
RDKKRCTESVSILNSTEKETPLSVALNVTISPHPSDDSWKAFLGDFVLQLLPEESLVEHFSERT
FTLMSSESSSQLLIYVHSECNNVEKEENVLKGPASIYGKGIRVESSFSSDMLQDLAWLQKRRGI
KLYQRPEGTHTIKVRIYLLEAGLTRLDFMSDAGSRMKKFNQLLKRVMGKLYSLSIPDVLEEDEE
ESESEPEGQDIDELYQFVKRTHQQEAKSVQVDVQHPALIPVLRPYQREAVNWMLQQEQFRSTPA
DNSLHFLWREIVTPDGLNLYYNPYTGCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALILTHT
RQDVRQDALTLPEGKVVNYFIPTHCPRGKVKSREIQNTECEPKEKVHCPPTRVMILTAVKEMNG
KKGVSILSIYKYVSSTFRYDVQRNRSLLKRMLKCLIFEGLVKQIKGRGFSGTFTLGKNYKEDVF
DKTKKQAVGSPQKIEKELRKSVNKDTDSEYMPSDIYDDDNDNDDDDDDDPYYYYCKARKSRKLK
KKPVLLTKKEKGQPVNLDSQVEAPAAGDCASADAHVSESTCVSENRQIQDAEDCVESPSPAAME
LAQSNTASFCETPDYRFECICGEFDQIGRKPRVQCLKCHLWQHAKCVNYEEKNLKVKPFYCPHC
LVAMEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVII
TYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM
AQRLSGINRWCVSGTPVQRGLEDLFGLVVFLGIEPYCVKHWWIRLLYHPYCKKNPQHLYSFIAK
IMWRSAKKDVIDQIQIPPQTEEMHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSL
DRRTVSSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCA
LNGLAGIHIIKGRRAQYRAALALPPPECVILSEYALAAELYREVLRSSEEHKGKLKTDSLQRLH
ATHNLMELLVAKHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALQPVQQSIRELQRK
VHSGSPWWLNVVHRAMEYAVDEELVQRVRNEISSNYKHQTDKLSMSEKFRDCRGLQFLLTTQME
ELHKFQKLVREAVKKLEKPPSRDVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSNTV
KGQTAIFEEMIEDEEGLVDDRVPTTTRGLWAVSETERSMKAILSFARSHRFDVEYIDEGSVSMD
LFEAWKKEYKLLHEYWMTLRNRVSAVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVEQNRI
KLVNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCN
ECTSIIIEQYSVGSHRSSIKCAICRQTTSHKEVSYVFTSEKANQEDDIPVKGSHSTKVEAVVRT
LMKIQLKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQISRIKTFQENLSAFKYDPQINILLL
PLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML
KTAERSHTSSSGKHSEASALTVADLADLFTKESEELE

hide sequence

RefSeq Acc Id:

XP_006227701 ⟸ XM_006227639

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSSRRKRAPPMKVDEERQQQLRWNMHEDLRNEPLSLTEEERACWDADSSDCIIIDDDPPEGAAH
RDKKRCTESVSILNSTEKETPLSVALNVTISPHPSDDSWKAFLGDFVLQLLPEESLVEHFSERT
FTLMSSESSSQLLIYVHSECNNVEKEENVLKGPASIYGKGIRVESSFSSDMLQDLAWLQKRRGI
KLYQRPEGTHTIKVRIYLLEAGLTRLDFMSDAGSRMKKFNQLLKRVMGKLYSLSIPDVLEEDEE
ESESEPEGQDIDELYQFVKRTHQQEAKSVQVDVQHPALIPVLRPYQREAVNWMLQQEQFRSTPA
GDNSLHFLWREIVTPDGLNLYYNPYTGCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALILTH
TRQDVRQDALTLPEGKVVNYFIPTHCPRGKVKSREIQNTECEPKEKVHCPPTRVMILTAVKEMN
GKKGVSILSIYKYVSSTFRYDVQRNRSLLKRMLKCLIFEGLVKQIKGRGFSGTFTLGKNYKEDV
FDKTKKQAVGSPQKIEKELRKSVNKDTDSEYMPSDIYDDDNDNDDDDDDDPYYYYCKARKSRKL
KKKPVLLTKKEKGQPVNLDSQVEAPAAGDCASADAHVSESTCVSENRQIQDAEDCVESPSPAAM
ELAQSNTASFCETPDYRFECICGEFDQIGRKPRVQCLKCHLWQHAKCVNYEEKNLKVKPFYCPH
CLVAMEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVI
ITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAE
MAQRLSGINRWCVSGTPVQRGLEDLFGLVVFLGIEPYCVKHWWIRLLYHPYCKKNPQHLYSFIA
KIMWRSAKKDVIDQIQIPPQTEEMHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSS
LDRRTVSSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVC
ALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLVAKHPGIPPT
LRDGRLEEEAKQLREHYMSKCNTEVAEAQQALQPVQQSIRELQRKVHSGSPWWLNVVHRAMEYA
VDEELVQRVRNEISSNYKHQTDKLSMSEKFRDCRGLQFLLTTQMEELHKFQKLVREAVKKLEKP
PSRDVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSNTVKGQTAIFEEMIEDEEGLVD
DRVPTTTRGLWAVSETERSMKAILSFARSHRFDVEYIDEGSVSMDLFEAWKKEYKLLHEYWMTL
RNRVSAVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVEQNRIKLVNDKAVATSQLQKKLGQ
LLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSI
KCAICRQTTSHKEVSYVFTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLKDPGAKALVFSTW
QDVLDIISKALTDNNMGFTQISRIKTFQENLSAFKYDPQINILLLPLHTGSNGLTIIEATHVLL
VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTSSSGKHSEASA
LTVADLADLFTKESEELE

hide sequence

Ensembl Acc Id:

ENSRNOP00000019893 ⟸ ENSRNOT00000019893

Ensembl Acc Id:

ENSRNOP00000071936 ⟸ ENSRNOT00000088292

Ensembl Acc Id:

ENSRNOP00000084462 ⟸ ENSRNOT00000111484

RefSeq Acc Id:	XP_063144705 ⟸ XM_063288635
- Peptide Label:	isoform X1

Protein Domains

H15 Helicase C-terminal RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9B2-F1-model_v2	AlphaFold	D4A9B2	1-1701	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689499

Promoter ID:

EPDNEW_R13

Type:

initiation region

Name:

Shprh_1

Description:

SNF2 histone linker PHD RING helicase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	5,240,223 - 5,240,283	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310342	AgrOrtholog
BioCyc Gene	G2FUF-62406	BioCyc
Ensembl Genes	ENSRNOG00000014450	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019893.8	UniProtKB/TrEMBL
	ENSRNOT00000088292	ENTREZGENE
	ENSRNOT00000088292.3	UniProtKB/TrEMBL
	ENSRNOT00000111484.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	ATP-helicase/E3_Ub-Ligase	UniProtKB/TrEMBL
	DEAD-like_N	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	Histone_H1/H5	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SHPRH_helical_1st	UniProtKB/TrEMBL
	SHPRH_helical_2nd	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:308282	UniProtKB/TrEMBL
NCBI Gene	308282	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE SHPRH	UniProtKB/TrEMBL
	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Helicase_C	UniProtKB/TrEMBL
	Linker_histone	UniProtKB/TrEMBL
	SHPRH_helical-1st	UniProtKB/TrEMBL
	SHPRH_helical-2nd	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PhenoGen	Shprh	PhenoGen
PROSITE	H15	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014450	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	H15	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	FYVE_PHD_ZnF	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
	SSF46785	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K1Q2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A1C4_RAT	UniProtKB/TrEMBL
	A6JP42_RAT	UniProtKB/TrEMBL
	D4A9B2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-16	Shprh	SNF2 histone linker PHD RING helicase	Shprh	SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Shprh	SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase	Shprh	SNF2 histone linker PHD RING helicase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Shprh	SNF2 histone linker PHD RING helicase	Shprh_predicted	SNF2 histone linker PHD RING helicase (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Shprh_predicted	SNF2 histone linker PHD RING helicase (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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