Slc38a6 (solute carrier family 38, member 6) - Rat Genome Database

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Gene: Slc38a6 (solute carrier family 38, member 6) Rattus norvegicus
Analyze
Symbol: Slc38a6
Name: solute carrier family 38, member 6
RGD ID: 1310330
Description: Predicted to enable L-glutamate transmembrane transporter activity and L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to be located in membrane and synapse. Predicted to be active in plasma membrane. Orthologous to human SLC38A6 (solute carrier family 38 member 6); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: amino acid transporter SLC38A6; LOC299139; N-system amino acid transporter 1; Na(+)-coupled neutral amino acid transporter 6; Na+-dependent neutral amino acid transporter; NAT-1; probable sodium-coupled neutral amino acid transporter 6; Snat6; solute carrier family 38 member 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8697,723,526 - 97,814,394 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl697,723,471 - 97,785,791 (+)EnsemblGRCr8
mRatBN7.2691,987,652 - 92,076,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl691,987,672 - 92,049,935 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx692,377,382 - 92,439,426 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0692,676,880 - 92,738,925 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0692,104,770 - 92,166,811 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0696,171,756 - 96,241,512 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl696,171,756 - 96,241,096 (+)Ensemblrn6Rnor6.0
Rnor_5.06105,603,543 - 105,670,960 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4695,715,729 - 95,778,756 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera690,450,252 - 90,511,348 (+)NCBICelera
RGSC_v3.1695,719,184 - 95,782,212 (+)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,IEA,ISO,ISS)
synapse  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24752331  


Genomics

Comparative Map Data
Slc38a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8697,723,526 - 97,814,394 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl697,723,471 - 97,785,791 (+)EnsemblGRCr8
mRatBN7.2691,987,652 - 92,076,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl691,987,672 - 92,049,935 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx692,377,382 - 92,439,426 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0692,676,880 - 92,738,925 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0692,104,770 - 92,166,811 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0696,171,756 - 96,241,512 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl696,171,756 - 96,241,096 (+)Ensemblrn6Rnor6.0
Rnor_5.06105,603,543 - 105,670,960 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4695,715,729 - 95,778,756 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera690,450,252 - 90,511,348 (+)NCBICelera
RGSC_v3.1695,719,184 - 95,782,212 (+)NCBI
Cytogenetic Map6q24NCBI
SLC38A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381460,981,245 - 61,083,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1460,981,114 - 61,114,316 (+)Ensemblhg38GRCh38
GRCh371461,447,963 - 61,550,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361460,517,633 - 60,588,929 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341460,517,632 - 60,588,929NCBI
Celera1441,498,096 - 41,600,701 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1441,611,189 - 41,713,812 (+)NCBIHuRef
CHM1_11461,387,113 - 61,489,815 (+)NCBICHM1_1
T2T-CHM13v2.01455,187,785 - 55,290,408 (+)NCBIT2T-CHM13v2.0
Slc38a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391273,333,622 - 73,408,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1273,333,553 - 73,400,823 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381273,286,739 - 73,361,998 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,286,779 - 73,354,049 (+)Ensemblmm10GRCm38
MGSCv371274,387,842 - 74,453,916 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361274,205,711 - 74,271,794 (+)NCBIMGSCv36mm8
Celera1274,398,188 - 74,460,275 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1230.42NCBI
Slc38a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554668,626,848 - 8,679,759 (-)Ensembl
ChiLan1.0NW_0049554668,626,193 - 8,679,764 (-)NCBIChiLan1.0ChiLan1.0
SLC38A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21562,117,924 - 62,214,595 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11461,334,568 - 61,426,282 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01441,587,966 - 41,687,971 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11459,846,569 - 59,918,007 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1459,846,733 - 59,942,839 (+)EnsemblpanPan2panpan1.1
SLC38A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1835,960,687 - 36,023,434 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl835,960,784 - 36,023,226 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha835,714,063 - 35,776,847 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0836,194,095 - 36,266,983 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl836,194,213 - 36,256,924 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1835,804,613 - 35,877,385 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0835,882,082 - 35,954,721 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0836,243,927 - 36,316,501 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc38a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864068,997,056 - 69,053,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364955,137,988 - 5,194,747 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364955,137,988 - 5,194,643 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1189,923,323 - 189,988,552 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11189,923,385 - 189,988,562 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,205,607 - 211,293,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12438,173,903 - 38,263,118 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605326,428,470 - 26,486,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473440,076,545 - 40,143,373 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473440,076,545 - 40,143,137 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc38a6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1787,540,920 - 87,602,617 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc38a6
545 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:103
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000029328
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat

Markers in Region
RH133540  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2692,049,734 - 92,049,928 (+)MAPPERmRatBN7.2
Rnor_6.0696,241,310 - 96,241,503NCBIRnor6.0
Rnor_5.06105,670,758 - 105,670,951UniSTSRnor5.0
RGSC_v3.4695,778,970 - 95,779,163UniSTSRGSC3.4
Celera690,511,562 - 90,511,755UniSTS
RH 3.4 Map6657.3UniSTS
Cytogenetic Map6q24UniSTS
BF403384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2691,994,290 - 91,994,383 (+)MAPPERmRatBN7.2
Rnor_6.0696,178,498 - 96,178,590NCBIRnor6.0
Rnor_5.06105,610,285 - 105,610,377UniSTSRnor5.0
RGSC_v3.4695,722,348 - 95,722,440UniSTSRGSC3.4
Celera690,456,871 - 90,456,963UniSTS
RH 3.4 Map6656.79UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 355 192 11 144 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY266018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000029328   ⟹   ENSRNOP00000035818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl697,723,471 - 97,785,791 (+)Ensembl
mRatBN7.2 Ensembl691,987,693 - 92,049,935 (+)Ensembl
Rnor_6.0 Ensembl696,171,756 - 96,241,096 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100753   ⟹   ENSRNOP00000077661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl697,723,471 - 97,729,858 (+)Ensembl
mRatBN7.2 Ensembl691,987,672 - 92,049,038 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103137   ⟹   ENSRNOP00000085669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl697,723,471 - 97,785,791 (+)Ensembl
mRatBN7.2 Ensembl691,987,693 - 92,049,935 (+)Ensembl
RefSeq Acc Id: NM_001013099   ⟹   NP_001013117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,526 - 97,785,376 (+)NCBI
mRatBN7.2691,987,672 - 92,049,521 (+)NCBI
Rnor_6.0696,171,756 - 96,241,096 (+)NCBI
Rnor_5.06105,603,543 - 105,670,960 (+)NCBI
RGSC_v3.4695,715,729 - 95,778,756 (+)RGD
Celera690,450,252 - 90,511,348 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240209   ⟹   XP_006240271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,699 - 97,785,792 (+)NCBI
mRatBN7.2691,987,864 - 92,049,937 (+)NCBI
Rnor_6.0696,171,929 - 96,241,512 (+)NCBI
Rnor_5.06105,603,543 - 105,670,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240210   ⟹   XP_006240272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,862 - 97,785,792 (+)NCBI
mRatBN7.2691,988,031 - 92,049,937 (+)NCBI
Rnor_6.0696,172,093 - 96,241,512 (+)NCBI
Rnor_5.06105,603,543 - 105,670,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112001   ⟹   XP_038967929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,805,568 (+)NCBI
mRatBN7.2691,987,652 - 92,069,711 (+)NCBI
RefSeq Acc Id: XM_039112004   ⟹   XP_038967932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,769,658 - 97,785,792 (+)NCBI
mRatBN7.2692,035,577 - 92,049,937 (+)NCBI
RefSeq Acc Id: XM_039112006   ⟹   XP_038967934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,767,158 (+)NCBI
mRatBN7.2691,987,652 - 92,029,705 (+)NCBI
RefSeq Acc Id: XM_063261712   ⟹   XP_063117782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,728,483 - 97,785,792 (+)NCBI
RefSeq Acc Id: XM_063261713   ⟹   XP_063117783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,782,467 (+)NCBI
RefSeq Acc Id: XM_063261714   ⟹   XP_063117784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,754,140 - 97,785,792 (+)NCBI
RefSeq Acc Id: XM_063261715   ⟹   XP_063117785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,779,861 (+)NCBI
RefSeq Acc Id: XM_063261716   ⟹   XP_063117786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,782,467 (+)NCBI
RefSeq Acc Id: XR_005505475
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,805,568 (+)NCBI
mRatBN7.2691,987,652 - 92,069,711 (+)NCBI
RefSeq Acc Id: XR_005505476
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,814,394 (+)NCBI
mRatBN7.2691,987,652 - 92,076,416 (+)NCBI
RefSeq Acc Id: XR_005505480
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,772,070 (+)NCBI
mRatBN7.2691,987,652 - 92,036,214 (+)NCBI
RefSeq Acc Id: XR_010052064
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,783,735 (+)NCBI
RefSeq Acc Id: XR_010052065
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,773,910 (+)NCBI
RefSeq Acc Id: XR_010052066
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,772,027 (+)NCBI
RefSeq Acc Id: XR_010052067
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8697,723,558 - 97,773,623 (+)NCBI
RefSeq Acc Id: NP_001013117   ⟸   NM_001013099
- UniProtKB: Q6WWW3 (UniProtKB/Swiss-Prot),   A6HC57 (UniProtKB/TrEMBL),   F1LRY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240271   ⟸   XM_006240209
- Peptide Label: isoform X2
- UniProtKB: A6HC57 (UniProtKB/TrEMBL),   F1LRY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240272   ⟸   XM_006240210
- Peptide Label: isoform X2
- UniProtKB: A6HC57 (UniProtKB/TrEMBL),   F1LRY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035818   ⟸   ENSRNOT00000029328
RefSeq Acc Id: XP_038967929   ⟸   XM_039112001
- Peptide Label: isoform X1
- UniProtKB: A6HC57 (UniProtKB/TrEMBL),   F1LRY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967934   ⟸   XM_039112006
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038967932   ⟸   XM_039112004
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000085669   ⟸   ENSRNOT00000103137
Ensembl Acc Id: ENSRNOP00000077661   ⟸   ENSRNOT00000100753
RefSeq Acc Id: XP_063117783   ⟸   XM_063261713
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063117786   ⟸   XM_063261716
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117785   ⟸   XM_063261715
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063117782   ⟸   XM_063261712
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117784   ⟸   XM_063261714
- Peptide Label: isoform X5
Protein Domains
Amino acid transporter transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6WWW3-F1-model_v2 AlphaFold Q6WWW3 1-457 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694665
Promoter ID:EPDNEW_R5189
Type:initiation region
Name:Slc38a6_1
Description:solute carrier family 38, member 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0696,171,724 - 96,171,784EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310330 AgrOrtholog
BioCyc Gene G2FUF-37113 BioCyc
Ensembl Genes ENSRNOG00000022622 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000029328 ENTREZGENE
InterPro AA_transpt_TM UniProtKB/Swiss-Prot
KEGG Report rno:299139 UniProtKB/Swiss-Prot
NCBI Gene 299139 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 6-RELATED UniProtKB/Swiss-Prot
Pfam Aa_trans UniProtKB/Swiss-Prot
PhenoGen Slc38a6 PhenoGen
RatGTEx ENSRNOG00000022622 RatGTEx
UniProt A0A8I5XWD5_RAT UniProtKB/TrEMBL
  A0A8I6GD60_RAT UniProtKB/TrEMBL
  A6HC57 ENTREZGENE, UniProtKB/TrEMBL
  F1LRY2 ENTREZGENE, UniProtKB/TrEMBL
  Q6WWW3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Slc38a6  solute carrier family 38, member 6  Slc38a6_predicted  solute carrier family 38, member 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Slc38a6_predicted  solute carrier family 38, member 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED