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Gene: Nif3l1 (NGG1 interacting factor 3 like 1) Rattus norvegicus

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Symbol:

Nif3l1

Name:

NGG1 interacting factor 3 like 1

RGD ID:

1310329

Description:

Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity and identical protein binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; neuron differentiation; and positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1); INTERACTS WITH 3-chloropropane-1,2-diol; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GTP cyclohydrolase I; LOC301431; Ngg1 interacting factor 3-like 1; Ngg1 interacting factor 3-like 1 (S. pombe); NIF3 NGG1 interacting factor 3-like 1; NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae); NIF3 NGG1 interacting factor 3-like 1 (S. pombe); NIF3-like protein 1; putative GTP cyclohydrolase 1 type 2 Nif3l1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NIF3L1 (NGG1 interacting factor 3 like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nif3l1 (Ngg1 interacting factor 3-like 1 (S. pombe))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nif3l1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NIF3L1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NIF3L1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nif3l1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NIF3L1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NIF3L1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nif3l1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nif3l1 (NGG1 interacting factor 3 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ACTN3 (actinin alpha 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NIF3L1 (NGG1 interacting factor 3 like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nif3l1 (Ngg1 interacting factor 3-like 1 (S. pombe))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nif3l1 (NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NIF3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4278	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4278	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nif3l1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	67,474,286 - 67,494,350 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	67,474,351 - 67,494,350 (+)	Ensembl				GRCr8
mRatBN7.2	9	59,980,101 - 60,001,490 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	59,979,799 - 60,000,131 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	68,474,054 - 68,494,582 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	73,589,984 - 73,610,512 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	71,908,058 - 71,928,587 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	65,329,143 - 65,349,280 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	65,331,290 - 65,349,141 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	57,105,338 - 57,122,976 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	57,425,453 - 57,443,091 (+)	NCBI		Celera
RGSC_v3.1	9	57,252,319 - 57,269,957 (+)	NCBI
Cytogenetic Map	9	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

flutamide (EXP)

formaldehyde (ISO)

gallic acid (ISO)

ivermectin (ISO)

ketamine (EXP)

lead diacetate (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

potassium chromate (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thiram (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (IEA,ISO,ISS)

neuron differentiation (IEA,ISO,ISS)

positive regulation of DNA-templated transcription (IEA,ISO)

regulation of DNA-templated transcription (IEA)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

mitochondrion (IBA)

nucleus (IEA,ISO,ISS)

Molecular Function

identical protein binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11124544	PMID:12477932	PMID:12522100	PMID:12951069	PMID:15163635	PMID:16189514	PMID:18614015	PMID:25416956	PMID:31515488

Genomics

Comparative Map Data

Nif3l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	67,474,286 - 67,494,350 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	67,474,351 - 67,494,350 (+)	Ensembl				GRCr8
mRatBN7.2	9	59,980,101 - 60,001,490 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	59,979,799 - 60,000,131 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	68,474,054 - 68,494,582 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	73,589,984 - 73,610,512 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	71,908,058 - 71,928,587 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	65,329,143 - 65,349,280 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	65,331,290 - 65,349,141 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	57,105,338 - 57,122,976 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	57,425,453 - 57,443,091 (+)	NCBI		Celera
RGSC_v3.1	9	57,252,319 - 57,269,957 (+)	NCBI
Cytogenetic Map	9	q31	NCBI

NIF3L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	200,889,327 - 200,903,932 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	200,888,992 - 200,905,578 (+)	Ensembl			hg38	GRCh38
GRCh37	2	201,754,050 - 201,768,655 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	201,462,391 - 201,476,898 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	201,579,651 - 201,594,159	NCBI
Celera	2	195,508,680 - 195,523,285 (+)	NCBI		Celera
Cytogenetic Map	2	q33.1	NCBI
HuRef	2	193,605,423 - 193,620,028 (+)	NCBI		HuRef
CHM1_1	2	201,760,035 - 201,774,640 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	201,372,777 - 201,387,382 (+)	NCBI		T2T-CHM13v2.0

Nif3l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	58,484,310 - 58,501,435 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	58,484,310 - 58,520,975 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	58,445,151 - 58,462,276 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	58,445,151 - 58,481,816 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	58,504,478 - 58,519,120 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	58,390,174 - 58,406,822 (+)	NCBI		MGSCv36	mm8
Celera	1	58,965,880 - 58,980,507 (+)	NCBI		Celera
Cytogenetic Map	1	C1.3	NCBI
cM Map	1	29.1	NCBI

Nif3l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	628,924 - 640,703 (-)	Ensembl
ChiLan1.0	NW_004955403	628,069 - 640,703 (-)	NCBI	ChiLan1.0	ChiLan1.0

NIF3L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	103,514,438 - 103,530,671 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	103,529,437 - 103,545,677 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	88,145,137 - 88,161,319 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	206,303,865 - 206,319,810 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	206,303,931 - 206,319,810 (+)	Ensembl			panPan2	panpan1.1

NIF3L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	10,082,823 - 10,136,647 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	10,083,104 - 10,107,050 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	10,967,996 - 11,010,341 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	9,988,229 - 10,030,627 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	9,988,281 - 10,014,508 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	9,969,715 - 10,012,079 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	9,947,554 - 9,989,894 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	9,941,454 - 9,983,823 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nif3l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	158,224,493 - 158,242,486 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	195,010 - 232,429 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	194,873 - 212,487 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NIF3L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	104,583,809 - 104,606,966 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	104,583,736 - 104,606,507 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	115,686,849 - 115,691,851 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NIF3L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	86,545,392 - 86,593,386 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	86,545,014 - 86,564,263 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	112,824,954 - 112,872,111 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nif3l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624889	273,397 - 282,426 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624889	273,072 - 284,777 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nif3l1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	133,938,694 - 133,959,146 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nif3l1
111 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	81
Count of miRNA genes:	50
Interacting mature miRNAs:	62
Transcripts:	ENSRNOT00000018014, ENSRNOT00000058667
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	57460497	78547958	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

RH134827

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	59,999,774 - 59,999,992 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	65,348,774 - 65,348,991	NCBI	Rnor6.0
Rnor_5.0	9	65,156,068 - 65,156,285	UniSTS	Rnor5.0
RGSC_v3.4	9	57,122,823 - 57,123,040	UniSTS	RGSC3.4
Celera	9	57,442,938 - 57,443,155	UniSTS
RH 3.4 Map	9	479.08	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018014 ⟹ ENSRNOP00000018014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	67,474,351 - 67,494,350 (+)	Ensembl
mRatBN7.2 Ensembl	9	59,979,799 - 60,000,131 (+)	Ensembl
Rnor_6.0 Ensembl	9	65,331,374 - 65,349,141 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000058667 ⟹ ENSRNOP00000055461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	67,476,561 - 67,494,350 (+)	Ensembl
mRatBN7.2 Ensembl	9	59,982,289 - 59,999,925 (+)	Ensembl
Rnor_6.0 Ensembl	9	65,331,290 - 65,348,926 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119712 ⟹ ENSRNOP00000089215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	67,476,477 - 67,493,929 (+)	Ensembl
mRatBN7.2 Ensembl	9	59,980,157 - 59,999,742 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165860 ⟹ ENSRNOP00000105547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	67,476,477 - 67,487,068 (+)	Ensembl

RefSeq Acc Id:

NM_001024763 ⟹ NP_001019934

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,372 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,980,186 - 60,000,163 (+)	NCBI
Rnor_6.0	9	65,331,290 - 65,348,927 (+)	NCBI
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI
RGSC_v3.4	9	57,105,338 - 57,122,976 (+)	RGD
Celera	9	57,425,453 - 57,443,091 (+)	RGD

Sequence:

show sequence

CGAGAGCTGTTTGACTCCCATGCTTTATGCCTCAAAGTGCAGAAGTGAATGGTACATAAATACC
ATTTCCTTACTGTGATTCCAGGCAACCTTCTACCTGGTTTCCGTATGCTGTCATCTGCACACGT
GGTCCCTACAAGTGTGCGACGTGCCCCATCGTGGATCTGCAGCTCTTCCCGTTCCTTCATGGAT
CTGAAGGCTCTTCTCTCTTCCTTGAATGACTTTGCCTCCCTCTCATTTGCTGAGAGCTGGGACA
ATGTGGGGTTGCTGGTGGAGCCAAGCCCGCCCCATACTGTAAATACACTCTTCCTGACCAATGA
CCTGACGGAGGAGGTCATGGAGGAGGCTCTGCAAAAGAAGGCAGATCTCATTCTCTCCTACCAT
CCACCTATCTTCCGGCCCATGAAGCACATAACTTGGAAGACCTGGAAGGAGCGCCTTGTGATCC
GGGCTCTGGAGAACAGAGTCGCCATCTACTCTCCCCACACGGCCTATGACGCCGCACCCCAGGG
AGTCAACAGCTGGTTGGCCAAAGGGCTCGGAACTTGCACTACCAGGCCCATCCACCCTTCCAAA
GCTCCGAACTACCCCACAGAGGGAACTCACCGACTAGAATTCAGTGCGAACCACAGCCAAGACC
TGGACAAAGTCATGTCTGCTGTGAAAGGGGTTGGAGGTGTCTCTGTCACCTCTTTTCCTGCCAG
GTGTGATGGTGAGGAGCAAACACGGGTCAGTCTGAATTGTACTCAGAAGGCTTTGATGCAGGTG
CTAGCTTTTCTCTCCCAGGACAGACAACTTTATCAGAAAACTGAAATTCTTTCTTTGGAGAAGC
CTTTGCTTCTGCATACTGGAATGGGACGCTTGTGCACACTGGATGAGTCTGTCTCCCTGGCAAC
AATGATAGAACGAATCAAAAGACACCTAAAGCTGCCTCATCTTCGCTTAGCTCTTGGAGTGGGG
AGGACCTTAGGGCATAGGATGGCCTCAAACAACTGTTCCTTTTGCTTCTATCTCCGAAGTACTG
GGATTCAAGTGTATATTGCTATTATTCATAGTCTCCAGTCAAAGTTGTGGCCCTGTGTGCTGGT
TCTGGGGGCAGCGTTCTACAAGGAGTAGAGGCCGACCTTTACCTCACAGGTGAAATGTCCCACC
ATGATGTTCTGGATGCTGCTTCCAAAGGGATAAATGTCATCCTTTGTGAACACAGCAACACCGA
AAGAGGCTTCCTTTCTGATCTTCAAGAAATGCTGGGTGTTCACTTGGAGAATAAGATTAATATT
ATCCTGTCTGAGACAGACAGGGACCCTCTCCGTGTCGTTTAGAAGGCAAGGACATTATGACAGA
AGCCTGGACTGAACAGGACTGTGCAGGAGTTGGTACACCACCCTTCTGCAGAACTGTAATGAAC
TTCTCATTTCAGTTTGCTAATCTGGCTCAACAAATGTCATAGCTCAGACGGTAAAACTGTAAAG
AGTACATTAAAGACAAATCTTGGGGCTGGAGAGATAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001393688 ⟹ NP_001380617

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,372 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,980,186 - 60,000,163 (+)	NCBI

RefSeq Acc Id:

XM_006244958 ⟹ XP_006245020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,286 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,980,104 - 60,000,144 (+)	NCBI
Rnor_6.0	9	65,329,146 - 65,348,816 (+)	NCBI
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI

Sequence:

show sequence

GGCAGAGCGGAAGTGACACACCAAAAGAGTTTCTGCGACTCGTGGGTTGTGGAGGAGAGAAAAG
CTCGCGGGGCTGTCTGTTCTTCACGCTGGAGGGTCTTATGTACCCCAGGCTGGCCTTGAACTGA
CAGCATAGCTGACACTGCCCTTGCACCTCGTCCTCTACTGGATCACAGACAAGTGCCAGTTTCT
GTGGTGCTGGGGACTAAACCCTTGTGCATGGTAGGCAACCTTCTACCTGGTTTCCGTATGCTGT
CATCTGCACACGTGGTCCCTACAAGTGTGCGACGTGCCCCATCGTGGATCTGCAGCTCTTCCCG
TTCCTTCATGGATCTGAAGGCTCTTCTCTCTTCCTTGAATGACTTTGCCTCCCTCTCATTTGCT
GAGAGCTGGGACAATGTGGGGTTGCTGGTGGAGCCAAGCCCGCCCCATACTGTAAATACACTCT
TCCTGACCAATGACCTGACGGAGGAGGTCATGGAGGAGGCTCTGCAAAAGAAGGCAGATCTCAT
TCTCTCCTACCATCCACCTATCTTCCGGCCCATGAAGCACATAACTTGGAAGACCTGGAAGGAG
CGCCTTGTGATCCGGGCTCTGGAGAACAGAGTCGCCATCTACTCTCCCCACACGGCCTATGACG
CCGCACCCCAGGGAGTCAACAGCTGGTTGGCCAAAGGGCTCGGAACTTGCACTACCAGGCCCAT
CCACCCTTCCAAAGCTCCGAACTACCCCACAGAGGGAACTCACCGACTAGAATTCAGTGCGAAC
CACAGCCAAGACCTGGACAAAGTCATGTCTGCTGTGAAAGGGGTTGGAGGTGTCTCTGTCACCT
CTTTTCCTGCCAGGTGTGATGGTGAGGAGCAAACACGGGTCAGTCTGAATTGTACTCAGAAGGC
TTTGATGCAGGTGCTAGCTTTTCTCTCCCAGGACAGACAACTTTATCAGAAAACTGAAATTCTT
TCTTTGGAGAAGCCTTTGCTTCTGCATACTGGAATGGGACGCTTGTGCACACTGGATGAGTCTG
TCTCCCTGGCAACAATGATAGAACGAATCAAAAGACACCTAAAGCTGCCTCATCTTCGCTTAGC
TCTTGGAGTGGGGAGGACCTTAGAGTCTCCAGTCAAAGTTGTGGCCCTGTGTGCTGGTTCTGGG
GGCAGCGTTCTACAAGGAGTAGAGGCCGACCTTTACCTCACAGGTGAAATGTCCCACCATGATG
TTCTGGATGCTGCTTCCAAAGGGATAAATGTCATCCTTTGTGAACACAGCAACACCGAAAGAGG
CTTCCTTTCTGATCTTCAAGAAATGCTGGGTGTTCACTTGGAGAATAAGATTAATATTATCCTG
TCTGAGACAGACAGGGACCCTCTCCGTGTCGTTTAGAAGGCAAGGACATTATGACAGAAGCCTG
GACTGAACAGGACTGTGCAGGAGTTGGTACACCACCCTTCTGCAGAA

hide sequence

RefSeq Acc Id:

XM_006244960 ⟹ XP_006245022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,302 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,980,104 - 60,000,144 (+)	NCBI
Rnor_6.0	9	65,329,156 - 65,348,816 (+)	NCBI
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI

Sequence:

show sequence

AAGTGACACACCAAAAGAGTTTCTGCGACTCGTGGGTTGTGGAGGAGAGAAAAGCTCGCGGGGC
TGTCTGTTCTTCACGCTGGAGGCTGGCCTTGAACTGACAGCATAGCTGACACTGCCCTTGCACC
TCGTCCTCTACTGGATCACAGACAAGTGCCAGTTTCTGTGGTGCTGGGGACTAAACCCTTGTGC
ATGGTAGGCAACCTTCTACCTGGTTTCCGTATGCTGTCATCTGCACACGTGGTCCCTACAAGTG
TGCGACGTGCCCCATCGTGGATCTGCAGCTCTTCCCGTTCCTTCATGGATCTGAAGGCTCTTCT
CTCTTCCTTGAATGACTTTGCCTCCCTCTCATTTGCTGAGAGCTGGGACAATGTGGGGTTGCTG
GTGGAGCCAAGCCCGCCCCATACTGTAAATACACTCTTCCTGACCAATGACCTGACGGAGGAGG
TCATGGAGGAGGCTCTGCAAAAGAAGGCAGATCTCATTCTCTCCTACCATCCACCTATCTTCCG
GCCCATGAAGCACATAACTTGGAAGACCTGGAAGGAGCGCCTTGTGATCCGGGCTCTGGAGAAC
AGAGTCGCCATCTACTCTCCCCACACGGCCTATGACGCCGCACCCCAGGGAGTCAACAGCTGGT
TGGCCAAAGGGCTCGGAACTTGCACTACCAGGCCCATCCACCCTTCCAAAGCTCCGAACTACCC
CACAGAGGGAACTCACCGACTAGAATTCAGTGCGAACCACAGCCAAGACCTGGACAAAGTCATG
TCTGCTGTGAAAGGGGTTGGAGGTGTCTCTGTCACCTCTTTTCCTGCCAGGTGTGATGGTGAGG
AGCAAACACGGGTCAGTCTGAATTGTACTCAGAAGGCTTTGATGCAGGTGCTAGCTTTTCTCTC
CCAGGACAGACAACTTTATCAGAAAACTGAAATTCTTTCTTTGGAGAAGCCTTTGCTTCTGCAT
ACTGGAATGGGACGCTTGTGCACACTGGATGAGTCTGTCTCCCTGGCAACAATGATAGAACGAA
TCAAAAGACACCTAAAGCTGCCTCATCTTCGCTTAGCTCTTGGAGTGGGGAGGACCTTAGAGTC
TCCAGTCAAAGTTGTGGCCCTGTGTGCTGGTTCTGGGGGCAGCGTTCTACAAGGAGTAGAGGCC
GACCTTTACCTCACAGGTGAAATGTCCCACCATGATGTTCTGGATGCTGCTTCCAAAGGGATAA
ATGTCATCCTTTGTGAACACAGCAACACCGAAAGAGGCTTCCTTTCTGATCTTCAAGAAATGCT
GGGTGTTCACTTGGAGAATAAGATTAATATTATCCTGTCTGAGACAGACAGGGACCCTCTCCGT
GTCGTTTAGAAGGCAAGGACATTATGACAGAAGCCTGGACTGAACAGGACTGTGCAGGAGTTGG
TACACCACCCTTCTGCAGAA

hide sequence

RefSeq Acc Id:

XM_006244962 ⟹ XP_006245024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,287 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,980,101 - 60,000,144 (+)	NCBI
Rnor_6.0	9	65,329,143 - 65,348,816 (+)	NCBI
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI

Sequence:

show sequence

CAGGGCAGAGCGGAAGTGACACACCAAAAGAGTTTCTGCGACTCGTGGGTTGTGGAGGAGAGAA
AAGCTCGCGGGGCTGTCTGTTCTTCACGCTGGAGGCAACCTTCTACCTGGTTTCCGTATGCTGT
CATCTGCACACGTGGTCCCTACAAGTGTGCGACGTGCCCCATCGTGGATCTGCAGCTCTTCCCG
TTCCTTCATGGATCTGAAGGCTCTTCTCTCTTCCTTGAATGACTTTGCCTCCCTCTCATTTGCT
GAGAGCTGGGACAATGTGGGGTTGCTGGTGGAGCCAAGCCCGCCCCATACTGTAAATACACTCT
TCCTGACCAATGACCTGACGGAGGAGGTCATGGAGGAGGCTCTGCAAAAGAAGGCAGATCTCAT
TCTCTCCTACCATCCACCTATCTTCCGGCCCATGAAGCACATAACTTGGAAGACCTGGAAGGAG
CGCCTTGTGATCCGGGCTCTGGAGAACAGAGTCGCCATCTACTCTCCCCACACGGCCTATGACG
CCGCACCCCAGGGAGTCAACAGCTGGTTGGCCAAAGGGCTCGGAACTTGCACTACCAGGCCCAT
CCACCCTTCCAAAGCTCCGAACTACCCCACAGAGGGAACTCACCGACTAGAATTCAGTGCGAAC
CACAGCCAAGACCTGGACAAAGTCATGTCTGCTGTGAAAGGGGTTGGAGGTGTCTCTGTCACCT
CTTTTCCTGCCAGGTGTGATGGTGAGGAGCAAACACGGGTCAGTCTGAATTGTACTCAGAAGGC
TTTGATGCAGGTGCTAGCTTTTCTCTCCCAGGACAGACAACTTTATCAGAAAACTGAAATTCTT
TCTTTGGAGAAGCCTTTGCTTCTGCATACTGGAATGGGACGCTTGTGCACACTGGATGAGTCTG
TCTCCCTGGCAACAATGATAGAACGAATCAAAAGACACCTAAAGCTGCCTCATCTTCGCTTAGC
TCTTGGAGTGGGGAGGACCTTAGAGTCTCCAGTCAAAGTTGTGGCCCTGTGTGCTGGTTCTGGG
GGCAGCGTTCTACAAGGAGTAGAGGCCGACCTTTACCTCACAGGTGAAATGTCCCACCATGATG
TTCTGGATGCTGCTTCCAAAGGGATAAATGTCATCCTTTGTGAACACAGCAACACCGAAAGAGG
CTTCCTTTCTGATCTTCAAGAAATGCTGGGTGTTCACTTGGAGAATAAGATTAATATTATCCTG
TCTGAGACAGACAGGGACCCTCTCCGTGTCGTTTAGAAGGCAAGGACATTATGACAGAAGCCTG
GACTGAACAGGACTGTGCAGGAGTTGGTACACCACCCTTCTGCAGAA

hide sequence

RefSeq Acc Id:

XM_006244963 ⟹ XP_006245025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,290 - 67,493,810 (+)	NCBI
mRatBN7.2	9	59,980,104 - 59,999,928 (+)	NCBI
Rnor_6.0	9	65,329,144 - 65,348,927 (+)	NCBI
Rnor_5.0	9	65,136,444 - 65,156,450 (+)	NCBI

Sequence:

show sequence

AGGGCAGAGCGGAAGTGACACACCAAAAGAGTTTCTGCGACTCGTGGGTTGTGGAGGAGAGAAA
AGCTCGCGGGGCTGTCTGTTCTTCACGCTGGAGGGTCTTATGTACCCCAGGCTGGCCTTGAACT
GACAGCATAGCTGACACTGCCCTTGCACCTCGTCCTCTACTGGATCACAGACAAGTGCCAGTTT
CTGTGGTGCTGGGGACTAAACCCTTGTGCATGGTAGGCAACCTTCTACCTGGTTTCCGTATGCT
GTCATCTGCACACGTGGTCCCTACAAGTGTGCGACGTGCCCCATCGTGGATCTGCAGCTCTTCC
CGTTCCTTCATGGATCTGAAGGCTCTTCTCTCTTCCTTGAATGACTTTGCCTCCCTCTCATTTG
CTGAGAGCTGGGACAATGTGGGGTTGCTGGTGGAGCCAAGCCCGCCCCATACTGTAAATACACT
CTTCCTGACCAATGACCTGACGGAGGAGGTCATGGAGGAGGCTCTGCAAAAGAAGGCAGATCTC
ATTCTCTCCTACCATCCACCTATCTTCCGGCCCATGAAGCACATAACTTGGAAGACCTGGAAGG
AGCGCCTTGTGATCCGGGCTCTGGAGAACAGAGTCGCCATCTACTCTCCCCACACGGCCTATGA
CGCCGCACCCCAGGGAGTCAACAGCTGGTTGGCCAAAGGGCTCGGAACTTGCACTACCAGGCCC
ATCCACCCTTCCAAAGCTCCGAACTACCCCACAGAGGGAACTCACCGACTAGAATTCAGTGCGA
ACCACAGCCAAGACCTGGACAAAGTCATGTCTGCTGTGAAAGGGGTTGGAGGTGTCTCTGTCAC
CTCTTTTCCTGCCAGGTGTGATGGTGAGGAGCAAACACGGGTCAGTCTGAATTGTACTCAGAAG
GCTTTGATGCAGGTGCTAGCTTTTCTCTCCCAGGACAGACAACTTTATCAGAAAACTGAAATTC
TTTCTTTGGAGAAGCCTTTGCTTCTGCATACTGGAATGGGACGCTTGTGCACACTGGATGAGTC
TGTCTCCCTGGCAACAATGATAGAACGAATCAAAAGACACCTAAAGCTGCCTCATCTTCGCTTA
GCTCTTGGAGTGGGGAGGACCTTAGGGCATAGGATGGCCTCAAACAACTGTTCCTTTTGCTTCT
ATCTCCGAAGTACTGGGATTCAAGTGTATATTGCTATTATTCATAGTCTCCAGTCAAAGTTGTG
GCCCTGTGTGCTGGTTCTGGGGGCAGCGTTCTACAAGGAGTAGAGGCCGACCTTTACCTCACAG
GTGAAATGTCCCACCATGATGTTCTGGATGCTGCTTCCAAAGGGATAAATGTCATCCTTTGTGA
ACACAGCAACACCGAAAGAGGCTTCCTTTCTGATCTTCAAGAAATGCTGGGTGTTCACTTGGAG
AATAAGATTAATATTATCCTGTCTGAGACAGACAGGGACCCTCTCCGTGTCGTTTAGAAGGCAA
GGACATTATGACAGAAGCCTGGACTGAACAGGACTGTGCAGGAGTTGGTACACCACCCTTCTGC
AGAACTGTAATGAACTTCTCATTTCAGTTTGCTAATCTGGCTCAACAAATGTCATAGCTCAGAC
GGTAAAACTGTAAAGAGTACATTAAAGACAAATCTTGGGGCTGGAGAGATA

hide sequence

RefSeq Acc Id:

XM_017596361 ⟹ XP_017451850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,350 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,981,252 - 60,000,144 (+)	NCBI
Rnor_6.0	9	65,330,318 - 65,348,816 (+)	NCBI

Sequence:

show sequence

TCAAGCCAGAACAGCTGAGTTGAACCAGCCAGCCGGAGCTTAGAAAGGGTGAGCTTATTTAGCA
GTAATTCCTAGGGGCTGAAACCATTCTAGGCTTAGATAAGATTGTACAGAGGCTAGAAGTTTCC
AGGACTGGGCCCAGGGTAGCCGACAGATGGGAGACGACAATTACACCAGGGTCTTATGTACCCC
AGGCTGGCCTTGAACTGACAGCATAGCTGACACTGCCCTTGCACCTCGTCCTCTACTGGATCAC
AGACAAGTGCCAGTTTCTGTGGTGCTGGGGACTAAACCCTTGTGCATGGTAGGCAACCTTCTAC
CTGGTTTCCGTATGCTGTCATCTGCACACGTGGTCCCTACAAGTGTGCGACGTGCCCCATCGTG
GATCTGCAGCTCTTCCCGTTCCTTCATGGATCTGAAGGCTCTTCTCTCTTCCTTGAATGACTTT
GCCTCCCTCTCATTTGCTGAGAGCTGGGACAATGTGGGGTTGCTGGTGGAGCCAAGCCCGCCCC
ATACTGTAAATACACTCTTCCTGACCAATGACCTGACGGAGGAGGTCATGGAGGAGGCTCTGCA
AAAGAAGGCAGATCTCATTCTCTCCTACCATCCACCTATCTTCCGGCCCATGAAGCACATAACT
TGGAAGACCTGGAAGGAGCGCCTTGTGATCCGGGCTCTGGAGAACAGAGTCGCCATCTACTCTC
CCCACACGGCCTATGACGCCGCACCCCAGGGAGTCAACAGCTGGTTGGCCAAAGGGCTCGGAAC
TTGCACTACCAGGCCCATCCACCCTTCCAAAGCTCCGAACTACCCCACAGAGGGAACTCACCGA
CTAGAATTCAGTGCGAACCACAGCCAAGACCTGGACAAAGTCATGTCTGCTGTGAAAGGGGTTG
GAGGTGTCTCTGTCACCTCTTTTCCTGCCAGGTGTGATGGTGAGGAGCAAACACGGGTCAGTCT
GAATTGTACTCAGAAGGCTTTGATGCAGGTGCTAGCTTTTCTCTCCCAGGACAGACAACTTTAT
CAGAAAACTGAAATTCTTTCTTTGGAGAAGCCTTTGCTTCTGCATACTGGAATGGGACGCTTGT
GCACACTGGATGAGTCTGTCTCCCTGGCAACAATGATAGAACGAATCAAAAGACACCTAAAGCT
GCCTCATCTTCGCTTAGCTCTTGGAGTGGGGAGGACCTTAGAGTCTCCAGTCAAAGTTGTGGCC
CTGTGTGCTGGTTCTGGGGGCAGCGTTCTACAAGGAGTAGAGGCCGACCTTTACCTCACAGGTG
AAATGTCCCACCATGATGTTCTGGATGCTGCTTCCAAAGGGATAAATGTCATCCTTTGTGAACA
CAGCAACACCGAAAGAGGCTTCCTTTCTGATCTTCAAGAAATGCTGGGTGTTCACTTGGAGAAT
AAGATTAATATTATCCTGTCTGAGACAGACAGGGACCCTCTCCGTGTCGTTTAGAAGGCAAGGA
CATTATGACAGAAGCCTGGACTGAACAGGACTGTGCAGGAGTTGGTACACCACCCTTCTGCAGA
A

hide sequence

RefSeq Acc Id:

XM_039083307 ⟹ XP_038939235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,302 - 67,494,350 (+)	NCBI
mRatBN7.2	9	59,980,104 - 60,001,490 (+)	NCBI

RefSeq Acc Id:

XM_039083310 ⟹ XP_038939238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,290 - 67,485,591 (+)	NCBI
mRatBN7.2	9	59,980,104 - 59,991,404 (+)	NCBI

RefSeq Acc Id:

XM_063266945 ⟹ XP_063123015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,290 - 67,492,927 (+)	NCBI

RefSeq Acc Id:

XM_063266946 ⟹ XP_063123016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,290 - 67,492,927 (+)	NCBI

RefSeq Acc Id:

XR_005488870

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	67,474,290 - 67,482,095 (+)	NCBI
mRatBN7.2	9	59,980,104 - 59,987,910 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019934	(Get FASTA)	NCBI Sequence Viewer
	NP_001380617	(Get FASTA)	NCBI Sequence Viewer
	XP_006245020	(Get FASTA)	NCBI Sequence Viewer
	XP_006245022	(Get FASTA)	NCBI Sequence Viewer
	XP_006245024	(Get FASTA)	NCBI Sequence Viewer
	XP_006245025	(Get FASTA)	NCBI Sequence Viewer
	XP_017451850	(Get FASTA)	NCBI Sequence Viewer
	XP_038939235	(Get FASTA)	NCBI Sequence Viewer
	XP_038939238	(Get FASTA)	NCBI Sequence Viewer
	XP_063123015	(Get FASTA)	NCBI Sequence Viewer
	XP_063123016	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97437	(Get FASTA)	NCBI Sequence Viewer
	AAH97992	(Get FASTA)	NCBI Sequence Viewer
	EDL98989	(Get FASTA)	NCBI Sequence Viewer
	EDL98990	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018014
	ENSRNOP00000055461
	ENSRNOP00000089215
GenBank Protein	Q4V7D6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019934 ⟸ NM_001024763
- Peptide Label:	isoform 2
- UniProtKB:	Q4V8D5 (UniProtKB/TrEMBL), A6IP70 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVN TLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHITWKTWKERLVIRALENRVAIYSPHTA YDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVMSAVKGVGGVS VTSFPARCDGEEQTRVSLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLHTGMGRLCTLD ESVSLATMIERIKRHLKLPHLRLALGVGRTLGHRMASNNCSFCFYLRSTGIQVYIAIIHSLQSK LWPCVLVLGAAFYKE hide sequence

RefSeq Acc Id:	XP_006245025 ⟸ XM_006244963
- Peptide Label:	isoform X4
- UniProtKB:	A6IP70 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGNLLPGFRMLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSFAESWDNVGLL VEPSPPHTVNTLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHITWKTWKERLVIRALEN RVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVM SAVKGVGGVSVTSFPARCDGEEQTRVSLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLH TGMGRLCTLDESVSLATMIERIKRHLKLPHLRLALGVGRTLGHRMASNNCSFCFYLRSTGIQVY IAIIHSLQSKLWPCVLVLGAAFYKE hide sequence

RefSeq Acc Id:	XP_006245024 ⟸ XM_006244962
- Peptide Label:	isoform X2
- UniProtKB:	Q4V7D6 (UniProtKB/Swiss-Prot), A6IP71 (UniProtKB/TrEMBL), A0A8I6A868 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVN TLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHITWKTWKERLVIRALENRVAIYSPHTA YDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVMSAVKGVGGVS VTSFPARCDGEEQTRVSLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLHTGMGRLCTLD ESVSLATMIERIKRHLKLPHLRLALGVGRTLESPVKVVALCAGSGGSVLQGVEADLYLTGEMSH HDVLDAASKGINVILCEHSNTERGFLSDLQEMLGVHLENKINIILSETDRDPLRVV hide sequence

RefSeq Acc Id:	XP_006245020 ⟸ XM_006244958
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q986 (UniProtKB/TrEMBL), A0A8I6A868 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGNLLPGFRMLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSFAESWDNVGLL VEPSPPHTVNTLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHITWKTWKERLVIRALEN RVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVM SAVKGVGGVSVTSFPARCDGEEQTRVSLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLH TGMGRLCTLDESVSLATMIERIKRHLKLPHLRLALGVGRTLESPVKVVALCAGSGGSVLQGVEA DLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFLSDLQEMLGVHLENKINIILSETDRDPLR VV hide sequence

RefSeq Acc Id:	XP_006245022 ⟸ XM_006244960
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q986 (UniProtKB/TrEMBL), A0A8I6A868 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGNLLPGFRMLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSFAESWDNVGLL VEPSPPHTVNTLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHITWKTWKERLVIRALEN RVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVM SAVKGVGGVSVTSFPARCDGEEQTRVSLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLH TGMGRLCTLDESVSLATMIERIKRHLKLPHLRLALGVGRTLESPVKVVALCAGSGGSVLQGVEA DLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFLSDLQEMLGVHLENKINIILSETDRDPLR VV hide sequence

RefSeq Acc Id:	XP_017451850 ⟸ XM_017596361
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q986 (UniProtKB/TrEMBL), A0A8I6A868 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGNLLPGFRMLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSFAESWDNVGLL VEPSPPHTVNTLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHITWKTWKERLVIRALEN RVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVM SAVKGVGGVSVTSFPARCDGEEQTRVSLNCTQKALMQVLAFLSQDRQLYQKTEILSLEKPLLLH TGMGRLCTLDESVSLATMIERIKRHLKLPHLRLALGVGRTLESPVKVVALCAGSGGSVLQGVEA DLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFLSDLQEMLGVHLENKINIILSETDRDPLR VV hide sequence

Ensembl Acc Id:

ENSRNOP00000018014 ⟸ ENSRNOT00000018014

Ensembl Acc Id:

ENSRNOP00000055461 ⟸ ENSRNOT00000058667

RefSeq Acc Id:	XP_038939235 ⟸ XM_039083307
- Peptide Label:	isoform X2
- UniProtKB:	Q4V7D6 (UniProtKB/Swiss-Prot), A6IP71 (UniProtKB/TrEMBL), A0A8I6A868 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939238 ⟸ XM_039083310
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000089215 ⟸ ENSRNOT00000119712

RefSeq Acc Id:	NP_001380617 ⟸ NM_001393688
- Peptide Label:	isoform 1
- UniProtKB:	Q4V7D6 (UniProtKB/Swiss-Prot), A6IP71 (UniProtKB/TrEMBL), A0A8I6A868 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123016 ⟸ XM_063266946
- Peptide Label:	isoform X4
- UniProtKB:	A6IP70 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123015 ⟸ XM_063266945
- Peptide Label:	isoform X3
- UniProtKB:	A6IP70 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105547 ⟸ ENSRNOT00000165860

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V7D6-F1-model_v2	AlphaFold	Q4V7D6	1-376	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310329	AgrOrtholog
BioCyc Gene	G2FUF-27449	BioCyc
Ensembl Genes	ENSRNOG00000013446	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000018014	ENTREZGENE
	ENSRNOT00000058667	ENTREZGENE
	ENSRNOT00000119712	ENTREZGENE
Gene3D-CATH	NIF3 (NGG1p interacting factor 3)-like	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7446502	IMAGE-MGC_LOAD
	IMAGE:7455562	IMAGE-MGC_LOAD
InterPro	GTP_cyclohydrolase_I/Nif3	UniProtKB/Swiss-Prot
	GTP_cyclohydrolase_I/Nif3_sf	UniProtKB/Swiss-Prot
	NIF3L1_animal	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114487	IMAGE-MGC_LOAD
	MGC:116136	IMAGE-MGC_LOAD
NCBI Gene	301431	ENTREZGENE
PANTHER	NIF3-LIKE PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR13799	UniProtKB/Swiss-Prot
Pfam	NIF3	UniProtKB/Swiss-Prot
PhenoGen	Nif3l1	PhenoGen
PIRSF	UCP037490_NIF3_euk	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013446	RatGTEx
Superfamily-SCOP	SSF102705	UniProtKB/Swiss-Prot
UniProt	A0A8I6A868	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q986	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LTR9_RAT	UniProtKB/TrEMBL
	A6IP70	ENTREZGENE, UniProtKB/TrEMBL
	A6IP71	ENTREZGENE, UniProtKB/TrEMBL
	NIF3L_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q4V8D5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-30	Nif3l1	NGG1 interacting factor 3 like 1	Nif3l1	NIF3 NGG1 interacting factor 3-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-09	Nif3l1	NIF3 NGG1 interacting factor 3-like 1	Nif3l1	NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-12-06	Nif3l1	NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)	Nif3l1	NIF3 NGG1 interacting factor 3-like 1 (S. pombe)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-24	Nif3l1	NIF3 NGG1 interacting factor 3-like 1 (S. pombe)	Nif3l1	Ngg1 interacting factor 3-like 1 (S. pombe)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Nif3l1	Ngg1 interacting factor 3-like 1 (S. pombe)	Nif3l1_predicted	Ngg1 interacting factor 3-like 1 (S. pombe) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Nif3l1_predicted	Ngg1 interacting factor 3-like 1 (S. pombe) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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