Fam120b (family with sequence similarity 120 member B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Fam120b (family with sequence similarity 120 member B) Rattus norvegicus
Analyze
Symbol: Fam120b
Name: family with sequence similarity 120 member B
RGD ID: 1310304
Description: Predicted to be involved in fat cell differentiation and peroxisome proliferator activated receptor signaling pathway. Predicted to be active in nucleus. Orthologous to human FAM120B (family with sequence similarity 120 member B); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: constitutive coactivator of peroxisome proliferator-activated receptor gamma; family with sequence similarity 120B; LOC308218; RGD1310304; similar to KIAA1838 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,993,104 - 65,058,160 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl165,012,060 - 65,058,160 (+)EnsemblGRCr8
mRatBN7.2156,320,015 - 56,385,064 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl156,339,129 - 56,385,061 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx161,191,163 - 61,237,363 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,854,662 - 69,900,910 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,101,134 - 63,147,334 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,345,559 - 57,392,114 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,345,577 - 57,392,113 (+)Ensemblrn6Rnor6.0
Rnor_5.01242,134,623 - 242,181,177 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4154,267,141 - 54,311,423 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,548,278 - 52,593,638 (+)NCBICelera
RGSC_v3.1154,270,090 - 54,316,002 (+)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17595322  


Genomics

Comparative Map Data
Fam120b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,993,104 - 65,058,160 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl165,012,060 - 65,058,160 (+)EnsemblGRCr8
mRatBN7.2156,320,015 - 56,385,064 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl156,339,129 - 56,385,061 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx161,191,163 - 61,237,363 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,854,662 - 69,900,910 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,101,134 - 63,147,334 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,345,559 - 57,392,114 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,345,577 - 57,392,113 (+)Ensemblrn6Rnor6.0
Rnor_5.01242,134,623 - 242,181,177 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4154,267,141 - 54,311,423 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,548,278 - 52,593,638 (+)NCBICelera
RGSC_v3.1154,270,090 - 54,316,002 (+)NCBI
Cytogenetic Map1q12NCBI
FAM120B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386170,290,703 - 170,407,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6170,290,703 - 170,407,067 (+)Ensemblhg38GRCh38
GRCh376170,599,791 - 170,716,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366170,457,769 - 170,556,162 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346170,533,475 - 170,631,868NCBI
Celera6171,413,409 - 171,510,239 (+)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6168,122,561 - 168,220,196 (+)NCBIHuRef
CHM1_16170,878,064 - 170,976,125 (+)NCBICHM1_1
T2T-CHM13v2.06171,649,394 - 171,778,062 (+)NCBIT2T-CHM13v2.0
Fam120b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,616,464 - 15,653,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,616,464 - 15,653,845 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381715,396,202 - 15,433,581 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,396,202 - 15,433,583 (+)Ensemblmm10GRCm38
MGSCv371715,533,166 - 15,570,545 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361715,101,209 - 15,138,544 (+)NCBIMGSCv36mm8
Celera1716,183,831 - 16,221,210 (+)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Fam120b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,387,368 - 3,457,123 (-)Ensembl
ChiLan1.0NW_0049554113,386,801 - 3,478,141 (-)NCBIChiLan1.0ChiLan1.0
FAM120B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25190,569,755 - 190,674,956 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16188,482,661 - 188,579,485 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06168,464,682 - 168,563,784 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16173,561,251 - 173,658,625 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6173,545,329 - 173,658,879 (+)EnsemblpanPan2panpan1.1
FAM120B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11272,292,419 - 72,377,839 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1272,306,154 - 72,381,786 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1272,050,495 - 72,140,451 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01273,272,398 - 73,362,935 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1273,272,442 - 73,362,921 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,546,237 - 72,636,153 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,368,052 - 72,458,269 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,758,788 - 72,849,190 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam120b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946151,299,865 - 151,369,419 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937098145,094 - 212,301 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004937098144,870 - 212,620 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM120B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl196,218 - 186,769 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11121,143 - 186,783 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21228,756 - 268,387 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM120B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,827,304 - 97,912,176 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1397,829,758 - 97,912,116 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604069,830,694 - 69,918,827 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam120b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248506,165,175 - 6,253,695 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248506,156,155 - 6,253,609 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam120b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v114573,610 - 632,657 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam120b
1256 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:817
Count of miRNA genes:290
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000002036
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat

Markers in Region
RH127980  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2156,384,604 - 56,384,785 (+)MAPPERmRatBN7.2
Rnor_6.0157,391,655 - 57,391,835NCBIRnor6.0
Rnor_5.01242,180,718 - 242,180,898UniSTSRnor5.0
RGSC_v3.4154,312,600 - 54,312,780UniSTSRGSC3.4
Celera152,593,179 - 52,593,359UniSTS
RH 3.4 Map1659.7UniSTS
Cytogenetic Map1q12UniSTS
BF386519  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2156,383,292 - 56,383,447 (+)MAPPERmRatBN7.2
Rnor_6.0157,390,211 - 57,390,365NCBIRnor6.0
Rnor_5.01242,179,274 - 242,179,428UniSTSRnor5.0
RGSC_v3.4154,311,288 - 54,311,442UniSTSRGSC3.4
Celera152,591,868 - 52,592,022UniSTS
RH 3.4 Map1673.4UniSTS
Cytogenetic Map1q12UniSTS
BE121297  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2156,380,539 - 56,380,706 (+)MAPPERmRatBN7.2
Rnor_6.0157,387,458 - 57,387,624NCBIRnor6.0
Rnor_5.01242,176,521 - 242,176,687UniSTSRnor5.0
RGSC_v3.4154,308,535 - 54,308,701UniSTSRGSC3.4
Celera152,589,115 - 52,589,281UniSTS
RH 3.4 Map1674.3UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY724515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB773328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY320722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000082790   ⟹   ENSRNOP00000074634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,012,060 - 65,052,572 (+)Ensembl
mRatBN7.2 Ensembl156,339,129 - 56,379,476 (+)Ensembl
Rnor_6.0 Ensembl157,345,577 - 57,390,470 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084017   ⟹   ENSRNOP00000069852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,012,226 - 65,058,160 (+)Ensembl
mRatBN7.2 Ensembl156,339,129 - 56,385,061 (+)Ensembl
Rnor_6.0 Ensembl157,345,683 - 57,392,113 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118789   ⟹   ENSRNOP00000083603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,012,060 - 65,056,524 (+)Ensembl
mRatBN7.2 Ensembl156,339,129 - 56,385,061 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119393   ⟹   ENSRNOP00000084163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,012,253 - 65,056,524 (+)Ensembl
mRatBN7.2 Ensembl156,339,171 - 56,383,431 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133470   ⟹   ENSRNOP00000107565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,012,060 - 65,056,524 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000153989   ⟹   ENSRNOP00000107022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,012,060 - 65,056,976 (+)Ensembl
RefSeq Acc Id: NM_001107466   ⟹   NP_001100936
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,226 - 65,058,160 (+)NCBI
mRatBN7.2156,339,129 - 56,385,064 (+)NCBI
Rnor_6.0157,345,683 - 57,392,114 (+)NCBI
Rnor_5.01242,134,623 - 242,181,177 (+)NCBI
RGSC_v3.4154,267,141 - 54,311,423 (+)RGD
Celera152,548,278 - 52,593,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110798   ⟹   XP_038966726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,993,104 - 65,058,158 (+)NCBI
mRatBN7.2156,320,015 - 56,385,062 (+)NCBI
RefSeq Acc Id: XM_039110803   ⟹   XP_038966731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,054 - 65,058,158 (+)NCBI
mRatBN7.2156,339,009 - 56,385,062 (+)NCBI
RefSeq Acc Id: XM_039110806   ⟹   XP_038966734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,051 - 65,056,320 (+)NCBI
mRatBN7.2156,339,010 - 56,385,062 (+)NCBI
RefSeq Acc Id: XM_039110811   ⟹   XP_038966739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,089 - 65,058,158 (+)NCBI
mRatBN7.2156,339,007 - 56,385,062 (+)NCBI
RefSeq Acc Id: XM_039110812   ⟹   XP_038966740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,089 - 65,058,158 (+)NCBI
mRatBN7.2156,339,009 - 56,385,062 (+)NCBI
RefSeq Acc Id: XM_039110817   ⟹   XP_038966745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,023,648 - 65,058,158 (+)NCBI
mRatBN7.2156,344,827 - 56,385,062 (+)NCBI
RefSeq Acc Id: XM_063288575   ⟹   XP_063144645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,098 - 65,058,158 (+)NCBI
RefSeq Acc Id: XM_063288585   ⟹   XP_063144655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,089 - 65,023,832 (+)NCBI
RefSeq Acc Id: XR_005504540
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,012,089 - 65,037,515 (+)NCBI
mRatBN7.2156,339,010 - 56,364,414 (+)NCBI
RefSeq Acc Id: NP_001100936   ⟸   NM_001107466
- UniProtKB: D4AE88 (UniProtKB/TrEMBL),   A6KB41 (UniProtKB/TrEMBL),   A0A0G2K8J8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074634   ⟸   ENSRNOT00000082790
Ensembl Acc Id: ENSRNOP00000069852   ⟸   ENSRNOT00000084017
RefSeq Acc Id: XP_038966726   ⟸   XM_039110798
- Peptide Label: isoform X1
- UniProtKB: D4AE88 (UniProtKB/TrEMBL),   A6KB41 (UniProtKB/TrEMBL),   A0A0G2K8J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966739   ⟸   XM_039110811
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZXF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966740   ⟸   XM_039110812
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A0B3 (UniProtKB/TrEMBL),   A0A0G2K8J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966731   ⟸   XM_039110803
- Peptide Label: isoform X1
- UniProtKB: D4AE88 (UniProtKB/TrEMBL),   A6KB41 (UniProtKB/TrEMBL),   A0A0G2K8J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966734   ⟸   XM_039110806
- Peptide Label: isoform X1
- UniProtKB: D4AE88 (UniProtKB/TrEMBL),   A6KB41 (UniProtKB/TrEMBL),   A0A0G2K8J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966745   ⟸   XM_039110817
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000084163   ⟸   ENSRNOT00000119393
Ensembl Acc Id: ENSRNOP00000083603   ⟸   ENSRNOT00000118789
RefSeq Acc Id: XP_063144655   ⟸   XM_063288585
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063144645   ⟸   XM_063288575
- Peptide Label: isoform X1
- UniProtKB: A6KB41 (UniProtKB/TrEMBL),   D4AE88 (UniProtKB/TrEMBL),   A0A0G2K8J8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107565   ⟸   ENSRNOT00000133470
Ensembl Acc Id: ENSRNOP00000107022   ⟸   ENSRNOT00000153989

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE88-F1-model_v2 AlphaFold D4AE88 1-785 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689643
Promoter ID:EPDNEW_R168
Type:initiation region
Name:Fam120b_1
Description:family with sequence similarity 120B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0157,345,731 - 57,345,791EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310304 AgrOrtholog
BioCyc Gene G2FUF-61313 BioCyc
Ensembl Genes ENSRNOG00000058790 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082790.3 UniProtKB/TrEMBL
  ENSRNOT00000084017 ENTREZGENE
  ENSRNOT00000084017.3 UniProtKB/TrEMBL
  ENSRNOT00000118789 ENTREZGENE
  ENSRNOT00000118789.2 UniProtKB/TrEMBL
  ENSRNOT00000119393.2 UniProtKB/TrEMBL
  ENSRNOT00000133470 ENTREZGENE
  ENSRNOT00000133470.1 UniProtKB/TrEMBL
  ENSRNOT00000153989.1 UniProtKB/TrEMBL
Gene3D-CATH 5'-nuclease UniProtKB/TrEMBL
InterPro Coact_PPARg UniProtKB/TrEMBL
  PIN_domain-like UniProtKB/TrEMBL
KEGG Report rno:308218 UniProtKB/TrEMBL
NCBI Gene 308218 ENTREZGENE
PANTHER CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA UniProtKB/TrEMBL
  PTHR15976 UniProtKB/TrEMBL
PhenoGen Fam120b PhenoGen
RatGTEx ENSRNOG00000058790 RatGTEx
Superfamily-SCOP SSF88723 UniProtKB/TrEMBL
UniProt A0A0G2K8J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0B3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LAN6_RAT UniProtKB/TrEMBL
  A0ABK0LXP4_RAT UniProtKB/TrEMBL
  A6KB41 ENTREZGENE, UniProtKB/TrEMBL
  D4AE88 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-06 Fam120b  family with sequence similarity 120 member B  Fam120b  family with sequence similarity 120B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam120b  family with sequence similarity 120B  RGD1310304_predicted  similar to KIAA1838 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1310304_predicted  similar to KIAA1838 protein (predicted)  LOC308218_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308218_predicted  similar to KIAA1838 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL