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Gene: Zbtb43 (zinc finger and BTB domain containing 43) Rattus norvegicus

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Symbol:

Zbtb43

Name:

zinc finger and BTB domain containing 43

RGD ID:

1310287

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase III general transcription initiation factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZBTB43 (zinc finger and BTB domain containing 43); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC311872; Zfp297b; zinc finger and BTB domain-containing protein 43; zinc finger protein 297B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	37,142,210 - 37,161,524 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	37,141,354 - 37,162,238 (-)	Ensembl				GRCr8
mRatBN7.2	3	16,744,535 - 16,763,854 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	16,744,535 - 16,763,909 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	19,812,911 - 19,832,075 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	28,397,926 - 28,417,089 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	26,648,910 - 26,668,059 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	12,489,774 - 12,509,372 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	12,493,179 - 12,502,859 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	17,822,094 - 17,841,425 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	12,454,213 - 12,473,533 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	11,480,827 - 11,500,057 (-)	NCBI		Celera
RGSC_v3.1	3	12,350,584 - 12,369,905 (-)	NCBI
Cytogenetic Map	3	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

celastrol (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

dimethyl sulfoxide (ISO)

disulfiram (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gedunin (ISO)

gentamycin (EXP)

glafenine (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

iron dichloride (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase III general transcription initiation factor binding (IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Zbtb43
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	37,142,210 - 37,161,524 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	37,141,354 - 37,162,238 (-)	Ensembl				GRCr8
mRatBN7.2	3	16,744,535 - 16,763,854 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	16,744,535 - 16,763,909 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	19,812,911 - 19,832,075 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	28,397,926 - 28,417,089 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	26,648,910 - 26,668,059 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	12,489,774 - 12,509,372 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	12,493,179 - 12,502,859 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	17,822,094 - 17,841,425 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	12,454,213 - 12,473,533 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	11,480,827 - 11,500,057 (-)	NCBI		Celera
RGSC_v3.1	3	12,350,584 - 12,369,905 (-)	NCBI
Cytogenetic Map	3	p11	NCBI

ZBTB43
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	126,804,072 - 126,838,210 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	126,804,988 - 126,838,210 (+)	Ensembl			hg38	GRCh38
GRCh37	9	129,567,319 - 129,600,489 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	128,607,182 - 128,637,318 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	126,646,914 - 126,677,050	NCBI
Celera	9	100,219,618 - 100,252,944 (+)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	99,180,394 - 99,213,637 (+)	NCBI		HuRef
CHM1_1	9	129,717,989 - 129,751,170 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	139,009,454 - 139,043,950 (+)	NCBI		T2T-CHM13v2.0

Zbtb43
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	33,340,299 - 33,358,592 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	33,340,299 - 33,358,571 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	33,450,287 - 33,468,581 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	33,450,287 - 33,468,559 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	33,305,807 - 33,324,052 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	33,272,296 - 33,290,541 (-)	NCBI		MGSCv36	mm8
Celera	2	33,157,481 - 33,175,713 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	22.46	NCBI

Zbtb43
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	1,660,186 - 1,681,701 (-)	Ensembl
ChiLan1.0	NW_004955419	1,660,186 - 1,681,701 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB43
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	12,518,224 - 12,550,893 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	12,520,552 - 12,553,238 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	97,923,985 - 97,956,579 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	126,431,959 - 126,464,385 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	126,458,685 - 126,460,088 (+)	Ensembl			panPan2	panpan1.1

ZBTB43
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	56,437,649 - 56,464,617 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	56,397,845 - 56,460,300 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	55,639,687 - 55,666,649 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	57,358,712 - 57,385,684 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	57,358,720 - 57,385,619 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	56,117,658 - 56,144,625 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	56,433,150 - 56,460,108 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	56,524,240 - 56,551,217 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zbtb43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	194,910,292 - 194,931,405 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	14,678,839 - 14,699,882 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	14,678,820 - 14,699,932 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB43
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	267,391,621 - 267,413,599 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	267,391,575 - 267,410,947 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZBTB43
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	11,299,607 - 11,329,932 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	11,300,922 - 11,302,325 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	4,886,514 - 4,918,970 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb43
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	8,569,414 - 8,591,174 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	8,569,414 - 8,595,664 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zbtb43
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	2,176,304 - 2,191,932 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zbtb43
79 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	28
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000022814
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
11528620	Bss113	Bone structure and strength QTL 113	9.75	2e-10	femur morphology trait (VT:0000559)	femoral neck width (CMO:0001695)	3	36888342	39639105	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH129638

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	16,744,633 - 16,745,927 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	12,489,869 - 12,491,162	NCBI	Rnor6.0
Rnor_5.0	3	17,822,189 - 17,823,482	UniSTS	Rnor5.0
RGSC_v3.4	3	12,454,308 - 12,455,601	UniSTS	RGSC3.4
Celera	3	11,480,922 - 11,482,215	UniSTS
RH 3.4 Map	3	88.62	UniSTS
Cytogenetic Map	3	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022814 ⟹ ENSRNOP00000022814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	37,144,618 - 37,158,923 (-)	Ensembl
mRatBN7.2 Ensembl	3	16,746,253 - 16,756,014 (-)	Ensembl
Rnor_6.0 Ensembl	3	12,493,179 - 12,502,859 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095180 ⟹ ENSRNOP00000095240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	16,745,302 - 16,763,830 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108027 ⟹ ENSRNOP00000086987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	37,141,354 - 37,162,238 (-)	Ensembl
mRatBN7.2 Ensembl	3	16,744,535 - 16,763,909 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113168 ⟹ ENSRNOP00000082155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	37,144,179 - 37,156,644 (-)	Ensembl
mRatBN7.2 Ensembl	3	16,745,302 - 16,758,524 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117382 ⟹ ENSRNOP00000096140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	37,141,422 - 37,161,566 (-)	Ensembl
mRatBN7.2 Ensembl	3	16,744,535 - 16,763,834 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120094 ⟹ ENSRNOP00000096930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	16,744,535 - 16,762,112 (-)	Ensembl

RefSeq Acc Id:

NM_001012094 ⟹ NP_001012094

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	37,142,214 - 37,161,485 (-)	NCBI
mRatBN7.2	3	16,744,539 - 16,763,815 (-)	NCBI
Rnor_6.0	3	12,489,774 - 12,509,305 (-)	NCBI
Rnor_5.0	3	17,822,094 - 17,841,425 (-)	NCBI
RGSC_v3.4	3	12,454,213 - 12,473,533 (-)	RGD
Celera	3	11,480,827 - 11,500,057 (-)	RGD

Sequence:

show sequence

GGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTCGTACGGCAACAGGGACGCTCC
GGTAGGCTGGAGCTGGGAGCGCGGAGCCGTCTGAAGACTGCTCTTCGATGGCCATGACATAAGG
AACATTATCCTGGGAACACAACTTTGCTCTCGGGGAGATGCCAACAAACGTTTATTCATCCCAG
ATAGGGCACCAAGGACAGAGCAAAGTACGATTCCACCAAAGTCCAACTTGTCGAACCACACTAA
ACAAGATTGGTGATGAAATGGAGCCTGGAACAAACTCTTTTCAAGTAGAGTTTCCAGATTTTTC
CAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATT
GTTGTCCAAGGCCACATTTTCCAGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTT
GTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGT
GTTTGAGAACATTCTTTTATTTAGTTACACAGGACGCCTTGTAATGCCTGCTCCAGAAATTGTT
AGTTACTTAACAGCAGCCAGCTTCCTCCAGATGTGGCATGTGGTGGACAAGTGCACCGAGGTTC
TGGAGGGAAACCCCACAGTCTTGTGTCAGAAGCTAAACCATGGCAGTGACCACCAGTCCCCCAG
CAGCAGTAACTACAATGGCCTGGCCGAGAGCTTTGAGCTGGGCTCTGGGGGCCACACTGATTTC
CCCAAAGCCCAGGAGCTGAGGGATGGCGAAAACGAAGAGGAGAGCACCAAAGACGAGCTGTCAT
CTCAGGTCACCGAGCACGAGTATCTGCCCAGTAACTCGTCCACGGAGCATGACCGCCTGAGCAC
CGAGATGGCCAGCCAGGACGGGGAGGAGGGGACCAACGACAGCACAGAGTTCCACTACACCCGG
CCTCTGTATAGCAAGCCCAGCATCATGCCTCACAGGCGCTGGATCCATGTGAAGCCTGAGCGCC
TGGAACAGCCTTGGGATGGCATGGATGTGCACGCAGCCTACGATGAGCACCAGGTCTCCGAGTC
CGTCAACACCATGCAGACAGATCACTCGGCCCAGCCTTCGGGAGCGGAGGAGGAGTTCCAGATT
GTGGAGAAGAAAGTGGAAGTAGAGTTCGACGAGCATGCAGAGGGCAGTAACTACGACGAGCAGG
TGGACTTCTACGGCTCCTCCATGGAGGAGTTCTCTGGAGAAAAGTTGGGGGGCGGTCTAATTGG
ACACAAACAGGAGACTGCCCTTGCAGCAGGCTACAGTGAGAACATTGAGATGGTGATGGGGATA
AAAGAAGAGGCGTCCCACTTAGGATTCTCAGCCACCGACAAGCTGTATCCTTGTCAGTGTGGGA
AAAGTTTCACGCACAAAAGTCAGCGAGATCGACACATGAGCATGCACCTCGGTCTGCGCCCGTA
TGGCTGCAGTGTCTGTGGTAAGAAATTCAAAATGAAGCACCATCTCGTGGGCCACATGAAAATT
CATACCGGCATAAAGCCCTACGAGTGTAATATCTGTGCAAAGAGATTTATGTGGAGGGACAGTT
TCCACAGGCATGTGACTTCTTGTACCAAGTCCTATGAAGCTGCAAAGGCTGGGCAGAATACGAC
TGAGGCTAACTAAAAATAGGGTCTGGCCCTTGAGTGGCATGCACAAAAATAAACTATGGTAATT
AATGCAAATCTGGGCACAGATGATGCGTGCCACTTGCTATTATGAGAGAGGCTTAAAAAAAAAG
GAAGATATTTCTGAAAGACCAGCTCTAAGTAGGCCAATTAAAAGATTTAATTTCTCAAATCTGT
ATGTTCCCATCCTGGCCTAGAATGGATGATGGGGATAAGTTCACCCAGTGCCCAGCTGGCAAGA
CAGCCCTTCCAGCCAGCAGTGGTTAAGGCAGGGGACTGGATGGCAGACTCTCACACCAGTCCTG
CCCAGGTGGCAGCGGCCGGCTGTCACCATTGTCCCGGGTCTTGTTACATTTGTTCTCCTGGTAG
CTTCAGGGCTTCTGGGCTTTGCTTTGGTAGCTGCGTCACTGGATGCTGCTCCCCTCAAGGCTAC
AGCGAGGACTCCTGGGCTGAGCTACGAGCAGAGCTCTGTTTGTTCTATTTTCGTATGTTCTAAA
GGTTCTAGTTAAAGCCATGGTGACATTAGACGGGGCTTCTGAGTCCGAATCAGGAGACAGTGTC
ACCGTGCTGCAGGCTCTGGAGAAGGCACAGTTTTATGTTTGTGTTTGGTTAAGTCTTCAGGTGC
CAGAGACAGAGCTTTCTAGTTGGTGTGTTGTCCTAAGCTTCCCTCAGTTAATGGCAGGAGATGA
CCGGTTTGCAGTGACACACGACAGTGCTGGCTAGTAGTGGCCTGTGGCTCCCTGCCTTAGATCA
CGGTGCTTCCCAACAAGGCCAGCCAGGGACCACAGCTCATGAGACTAAGCCAGAATGTGTGGCT
AAGAGTTCCCTGTGAGCAAGACACTTATAACAGAAGGCTTGAGAAAAGAATCTTAAAAACACTG
GCGTGGGGAGTGCTGTTGTAGAGGGTGGGCTAGGCAGTATTGTCAGCTTTGTGAGAGCTGGAAC
ATGGCTTCCAAGGGGATGGGAGCCTACATTAAGCAACATCATCTAGAGACTCTGTTCCCCAGTC
ACAGAGAAAGCCGCGTTTACAAGTCCCAATAGTTTATACACACATGTGCAGGCGCACACACACC
CACACTCACACTTCACCACCACCATCTCCTCACTCCCGCAAGGACGAGGCTGCCCTTGAGGTCT
TTTCTGCATGGTCAGACGTCTTAGGTTGGAAAGAAAGCTTGTGTTCAGAAAGCTTTTAAGCGTG
TGACAGTTCTGAGGCTCTTGCTGGGTAGGGGTCTAGTGCTCTTTCCATCACTGGAATAATACAC
TCGGAGCAAAGCAACTTAGGGAGGAAAGGGTTTGTATTAGCTCACACTACCATCATGGAGGAAA
CCACAGCAGGAACGGGAATGTTGACAGTCCAGACAGTTGGCCAGTCATGCCCACAGGCCACTCC
CTCAGTGGAGACTCGCTTCCTCTATGACTCTAGGTTGTGTCAGAGCTAGCTAGGCAGTAGGACA
GGGTTTTACTCCTATATCATCTGTTTCGTTCCTAAAGTTCGACTTTCTCTAATATGACAGACAT
TACTGGCAAAAGTGTCTGATATTTAGGCTCTGAACAAAGGATGTACCTTTGACCTTTGTCTGGA
AAGAGGAAAGAAAATGTGGACTGGCCAGTAAACGTTTGTAATCAAGATTACAAAACAGGGATCT
ATTTACAAACACTGTATCAATCTTGGCATATAAAGCACTTTGTATTAAAACTTTATTATAAGTA
TAGATGTAGGTTTTTTTTTTTAACCTAGAAACTAGATGTTACCTCCTAGTGGTTTGCTACATTA
AGATCTTCCAGTGTCTGCCAGTCAGCGACTGTCCTTGTCCCTGAGAAGTGAGTGCAGATGGACA
GTCACACTCACAGGCACACTCACGCCTCCTACTCTTCACACAGAGGCCAGCGGGTTTAGGGATG
ACCCGCTGTGTGAGGGCGAAGTGGTTTTGGCTTCTTAGTATTTCTACACTGGGGCAGTTAAGCC
GTTTTGTTGTCAGAAGCAGCCCTCTTGTTCACACCTACCTGCCTCCCATCGGAGTCTATTCGTA
CAAGAGCTGAGACCCTTGCAGAGAAGAATTAGAGGGTAAAAGAACCACCATGGGGACACCCTGG
TCCTGGGGTTGTACTGAGTCAGGATCCTTTGTCATGGTGCTGACAAAGCTTTTGAGTTGGAATG
TGGCAAACCCTGTGAGAAGGTGGGGTGTCATGGTCTAGAATGTGAAGTGAGGCTTCTGGCCTCC
CTTTCCCAATAGAGAGTCTTTCTGGCCGCCTGCCTCCTGCAGTACTAGTCTCTCCCCTCACCAC
TGCCTTAGAAATCCTCACCCTTCCGAACAAGCTCGAGTAGTTGTGGGCAGCACTGTCCAGCGTT
TCAGGGATTGTCAGTGGCCCACCAGCAAAGCGCATGTCTCTACACTTGGCTGGTTTTCTCCAGT
CCTCATACGAAAGGGCTTCAAGGCCCCGCTGCTTGCATTTCCTAATCGGCAGGCACCATGGCTT
AACTTCTTGGATGTACATCACAGGAGCTCCTTTTGTGTTGTGGTTTGCCCTCGTGCTCCTCTGA
GCCCTGGCCCATGACCTCGAATTTCTGTTCTCCCCTTCTCCGCCCACATTCTTAGAGCCCGCAT
TAAAGGCTCCCCTACATTGCAGGAAGTGTTTCCTGAACTACTCTGACCTGGGCGGGTTTTTAGC
AGTTGGGAAAGCTGCGAGCTGCAGTGGGTGGCAAAGTTGAGGAATATTTGGGAAAGTCCCTAGG
GTCAGGGTGGCACTCCACCTCGTCCACAAATGTGGTTGTTTCCTAAACTCTCAGATACACGGGG
AATGCTGAGGCCAGCGGGCCAGGATCTAGGCCTCCTGGAATCTAGGCTGCCTTGACTGGTAACT
AACTTTATCCAGTGAATCCTGAGTTGCTTTGGGTTTTGTTCTTGGTTTTTGTTTTTTGTTTTGT
TTTGTTTTGTTTTGTTTCTCTCTCTCTCTCTGCTATTTACATATTTAAAGGTACTGTTTTGCAA
ACCTCTACTGATAGTGCCCTGTGGGAAGATGCTGGAACGCCGTTTGCAAATGTGATTTTGTTTT
TCTTTTTAAATGTTGCTTGAAGCCTGTGTCGTCTCAGTTGCTGCTGCCTCCTTTCTTTTTATGA
GGTTCCCAATGTTTCTTCCAGAAAGTTATTTTATTTATGCAGGTCAGGTGACTCTTAGGCCCCA
GAACCATGGGATGGTAAGCAGATTGTTGTTAGGTGCGTATCATGGATACTTGGTGAACCACCTG
TGTTTTAGAAGTTAAATAGTTCTCTCTAGAATTGCTGTCTTCAGTGTACAGCGTGGTTTTAATT
GAATGTTACTGTTTAATATTTTCTTCTTATAGAAGAGACCATGTCCTTTTGTATGACAAGTTTT
AATAAATGTTACCTGTCCATTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233973 ⟹ XP_006234035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	37,142,210 - 37,161,524 (-)	NCBI
mRatBN7.2	3	16,744,535 - 16,763,854 (-)	NCBI
Rnor_6.0	3	12,489,774 - 12,509,372 (-)	NCBI
Rnor_5.0	3	17,822,094 - 17,841,425 (-)	NCBI

Sequence:

show sequence

CGCCTCCGGAAGCACTGGCAGTTTCGGGGGCGGGATCAGAAAGCGTATCCGAGGGGCGAGAGGC
TCGGGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTCGTACGGCAACAGGGACGC
TCCGGTAGGCTGGAGCTGGGAGCGCGGAGCCGTCTGAAGACTGCTCTTCGATGGCCATGACATA
AGGAACATTATCCTGGGAACACAACTTTGCTCTCGGCACTAAACAAGATTGGTGATGAAATGGA
GCCTGGAACAAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTA
AACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTTTCC
AGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTTGTGACCAAGTACTCCTGAAAAA
CAGTAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGTGTTTGAGAACATTCTTTTATTT
AGTTACACAGGACGCCTTGTAATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCAGCCAGCT
TCCTCCAGATGTGGCATGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACAGTCTT
GTGTCAGAAGCTAAACCATGGCAGTGACCACCAGTCCCCCAGCAGCAGTAACTACAATGGCCTG
GCCGAGAGCTTTGAGCTGGGCTCTGGGGGCCACACTGATTTCCCCAAAGCCCAGGAGCTGAGGG
ATGGCGAAAACGAAGAGGAGAGCACCAAAGACGAGCTGTCATCTCAGGTCACCGAGCACGAGTA
TCTGCCCAGTAACTCGTCCACGGAGCATGACCGCCTGAGCACCGAGATGGCCAGCCAGGACGGG
GAGGAGGGGACCAACGACAGCACAGAGTTCCACTACACCCGGCCTCTGTATAGCAAGCCCAGCA
TCATGCCTCACAGGCGCTGGATCCATGTGAAGCCTGAGCGCCTGGAACAGCCTTGGGATGGCAT
GGATGTGCACGCAGCCTACGATGAGCACCAGGTCTCCGAGTCCGTCAACACCATGCAGACAGAT
CACTCGGCCCAGCCTTCGGGAGCGGAGGAGGAGTTCCAGATTGTGGAGAAGAAAGTGGAAGTAG
AGTTCGACGAGCATGCAGAGGGCAGTAACTACGACGAGCAGGTGGACTTCTACGGCTCCTCCAT
GGAGGAGTTCTCTGGAGAAAAGTTGGGGGGCGGTCTAATTGGACACAAACAGGAGACTGCCCTT
GCAGCAGGCTACAGTGAGAACATTGAGATGGTGATGGGGATAAAAGAAGAGGCGTCCCACTTAG
GATTCTCAGCCACCGACAAGCTGTATCCTTGTCAGTGTGGGAAAAGTTTCACGCACAAAAGTCA
GCGAGATCGACACATGAGCATGCACCTCGGTCTGCGCCCGTATGGCTGCAGTGTCTGTGGTAAG
AAATTCAAAATGAAGCACCATCTCGTGGGCCACATGAAAATTCATACCGGCATAAAGCCCTACG
AGTGTAATATCTGTGCAAAGAGATTTATGTGGAGGGACAGTTTCCACAGGCATGTGACTTCTTG
TACCAAGTCCTATGAAGCTGCAAAGGCTGGGCAGAATACGACTGAGGCTAACTAAAAATAGGGT
CTGGCCCTTGAGTGGCATGCACAAAAATAAACTATGGTAATTAATGCAAATCTGGGCACAGATG
ATGCGTGCCACTTGCTATTATGAGAGAGGCTTAAAAAAAAAGGAAGATATTTCTGAAAGACCAG
CTCTAAGTAGGCCAATTAAAAGATTTAATTTCTCAAATCTGTATGTTCCCATCCTGGCCTAGAA
TGGATGATGGGGATAAGTTCACCCAGTGCCCAGCTGGCAAGACAGCCCTTCCAGCCAGCAGTGG
TTAAGGCAGGGGACTGGATGGCAGACTCTCACACCAGTCCTGCCCAGGTGGCAGCGGCCGGCTG
TCACCATTGTCCCGGGTCTTGTTACATTTGTTCTCCTGGTAGCTTCAGGGCTTCTGGGCTTTGC
TTTGGTAGCTGCGTCACTGGATGCTGCTCCCCTCAAGGCTACAGCGAGGACTCCTGGGCTGAGC
TACGAGCAGAGCTCTGTTTGTTCTATTTTCGTATGTTCTAAAGGTTCTAGTTAAAGCCATGGTG
ACATTAGACGGGGCTTCTGAGTCCGAATCAGGAGACAGTGTCACCGTGCTGCAGGCTCTGGAGA
AGGCACAGTTTTATGTTTGTGTTTGGTTAAGTCTTCAGGTGCCAGAGACAGAGCTTTCTAGTTG
GTGTGTTGTCCTAAGCTTCCCTCAGTTAATGGCAGGAGATGACCGGTTTGCAGTGACACACGAC
AGTGCTGGCTAGTAGTGGCCTGTGGCTCCCTGCCTTAGATCACGGTGCTTCCCAACAAGGCCAG
CCAGGGACCACAGCTCATGAGACTAAGCCAGAATGTGTGGCTAAGAGTTCCCTGTGAGCAAGAC
ACTTATAACAGAAGGCTTGAGAAAAGAATCTTAAAAACACTGGCGTGGGGAGTGCTGTTGTAGA
GGGTGGGCTAGGCAGTATTGTCAGCTTTGTGAGAGCTGGAACATGGCTTCCAAGGGGATGGGAG
CCTACATTAAGCAACATCATCTAGAGACTCTGTTCCCCAGTCACAGAGAAAGCCGCGTTTACAA
GTCCCAATAGTTTATACACACATGTGCAGGCGCACACACACCCACACTCACACTTCACCACCAC
CATCTCCTCACTCCCGCAAGGACGAGGCTGCCCTTGAGGTCTTTTCTGCATGGTCAGACGTCTT
AGGTTGGAAAGAAAGCTTGTGTTCAGAAAGCTTTTAAGCGTGTGACAGTTCTGAGGCTCTTGCT
GGGTAGGGGTCTAGTGCTCTTTCCATCACTGGAATAATACACTCGGAGCAAAGCAACTTAGGGA
GGAAAGGGTTTGTATTAGCTCACACTACCATCATGGAGGAAACCACAGCAGGAACGGGAATGTT
GACAGTCCAGACAGTTGGCCAGTCATGCCCACAGGCCACTCCCTCAGTGGAGACTCGCTTCCTC
TATGACTCTAGGTTGTGTCAGAGCTAGCTAGGCAGTAGGACAGGGTTTTACTCCTATATCATCT
GTTTCGTTCCTAAAGTTCGACTTTCTCTAATATGACAGACATTACTGGCAAAAGTGTCTGATAT
TTAGGCTCTGAACAAAGGATGTACCTTTGACCTTTGTCTGGAAAGAGGAAAGAAAATGTGGACT
GGCCAGTAAACGTTTGTAATCAAGATTACAAAACAGGGATCTATTTACAAACACTGTATCAATC
TTGGCATATAAAGCACTTTGTATTAAAACTTTATTATAAGTATAGATGTAGGTTTTTTTTTTTA
ACCTAGAAACTAGATGTTACCTCCTAGTGGTTTGCTACATTAAGATCTTCCAGTGTCTGCCAGT
CAGCGACTGTCCTTGTCCCTGAGAAGTGAGTGCAGATGGACAGTCACACTCACAGGCACACTCA
CGCCTCCTACTCTTCACACAGAGGCCAGCGGGTTTAGGGATGACCCGCTGTGTGAGGGCGAAGT
GGTTTTGGCTTCTTAGTATTTCTACACTGGGGCAGTTAAGCCGTTTTGTTGTCAGAAGCAGCCC
TCTTGTTCACACCTACCTGCCTCCCATCGGAGTCTATTCGTACAAGAGCTGAGACCCTTGCAGA
GAAGAATTAGAGGGTAAAAGAACCACCATGGGGACACCCTGGTCCTGGGGTTGTACTGAGTCAG
GATCCTTTGTCATGGTGCTGACAAAGCTTTTGAGTTGGAATGTGGCAAACCCTGTGAGAAGGTG
GGGTGTCATGGTCTAGAATGTGAAGTGAGGCTTCTGGCCTCCCTTTCCCAATAGAGAGTCTTTC
TGGCCGCCTGCCTCCTGCAGTACTAGTCTCTCCCCTCACCACTGCCTTAGAAATCCTCACCCTT
CCGAACAAGCTCGAGTAGTTGTGGGCAGCACTGTCCAGCGTTTCAGGGATTGTCAGTGGCCCAC
CAGCAAAGCGCATGTCTCTACACTTGGCTGGTTTTCTCCAGTCCTCATACGAAAGGGCTTCAAG
GCCCCGCTGCTTGCATTTCCTAATCGGCAGGCACCATGGCTTAACTTCTTGGATGTACATCACA
GGAGCTCCTTTTGTGTTGTGGTTTGCCCTCGTGCTCCTCTGAGCCCTGGCCCATGACCTCGAAT
TTCTGTTCTCCCCTTCTCCGCCCACATTCTTAGAGCCCGCATTAAAGGCTCCCCTACATTGCAG
GAAGTGTTTCCTGAACTACTCTGACCTGGGCGGGTTTTTAGCAGTTGGGAAAGCTGCGAGCTGC
AGTGGGTGGCAAAGTTGAGGAATATTTGGGAAAGTCCCTAGGGTCAGGGTGGCACTCCACCTCG
TCCACAAATGTGGTTGTTTCCTAAACTCTCAGATACACGGGGAATGCTGAGGCCAGCGGGCCAG
GATCTAGGCCTCCTGGAATCTAGGCTGCCTTGACTGGTAACTAACTTTATCCAGTGAATCCTGA
GTTGCTTTGGGTTTTGTTCTTGGTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCTCTC
TCTCTCTCTGCTATTTACATATTTAAAGGTACTGTTTTGCAAACCTCTACTGATAGTGCCCTGT
GGGAAGATGCTGGAACGCCGTTTGCAAATGTGATTTTGTTTTTCTTTTTAAATGTTGCTTGAAG
CCTGTGTCGTCTCAGTTGCTGCTGCCTCCTTTCTTTTTATGAGGTTCCCAATGTTTCTTCCAGA
AAGTTATTTTATTTATGCAGGTCAGGTGACTCTTAGGCCCCAGAACCATGGGATGGTAAGCAGA
TTGTTGTTAGGTGCGTATCATGGATACTTGGTGAACCACCTGTGTTTTAGAAGTTAAATAGTTC
TCTCTAGAATTGCTGTCTTCAGTGTACAGCGTGGTTTTAATTGAATGTTACTGTTTAATATTTT
CTTCTTATAGAAGAGACCATGTCCTTTTGTATGACAAGTTTTAATAAATGTTACCTGTCCATTT
TGTA

hide sequence

RefSeq Acc Id:

XM_006233974 ⟹ XP_006234036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	37,142,210 - 37,161,518 (-)	NCBI
mRatBN7.2	3	16,744,535 - 16,763,848 (-)	NCBI
Rnor_6.0	3	12,489,774 - 12,509,372 (-)	NCBI
Rnor_5.0	3	17,822,094 - 17,841,425 (-)	NCBI

Sequence:

show sequence

CGCCTCCGGAAGCACTGGCAGTTTCGGGGGCGGGATCAGAAAGCGTATCCGAGGGGCGAGAGGC
TCGGGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTCGTACGGCAACAGGGACGC
TCCGGTAGGCTGGAGCTGGGAGCGCGGAGCCGTCTGAAGCACTAAACAAGATTGGTGATGAAAT
GGAGCCTGGAACAAACTCTTTTCAAGTAGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAA
CTAAACCAGCAGCGCCAGCAAGGACAGTTATGTGACGTCTCCATTGTTGTCCAAGGCCACATTT
TCCAGGCACACAAAGCCGTTCTTGCTGCCAGTTCACCCTACTTTTGTGACCAAGTACTCCTGAA
AAACAGTAGGAGAATTGTTTTGCCTGATGTGATGAACCCAAGAGTGTTTGAGAACATTCTTTTA
TTTAGTTACACAGGACGCCTTGTAATGCCTGCTCCAGAAATTGTTAGTTACTTAACAGCAGCCA
GCTTCCTCCAGATGTGGCATGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACCCCACAGT
CTTGTGTCAGAAGCTAAACCATGGCAGTGACCACCAGTCCCCCAGCAGCAGTAACTACAATGGC
CTGGCCGAGAGCTTTGAGCTGGGCTCTGGGGGCCACACTGATTTCCCCAAAGCCCAGGAGCTGA
GGGATGGCGAAAACGAAGAGGAGAGCACCAAAGACGAGCTGTCATCTCAGGTCACCGAGCACGA
GTATCTGCCCAGTAACTCGTCCACGGAGCATGACCGCCTGAGCACCGAGATGGCCAGCCAGGAC
GGGGAGGAGGGGACCAACGACAGCACAGAGTTCCACTACACCCGGCCTCTGTATAGCAAGCCCA
GCATCATGCCTCACAGGCGCTGGATCCATGTGAAGCCTGAGCGCCTGGAACAGCCTTGGGATGG
CATGGATGTGCACGCAGCCTACGATGAGCACCAGGTCTCCGAGTCCGTCAACACCATGCAGACA
GATCACTCGGCCCAGCCTTCGGGAGCGGAGGAGGAGTTCCAGATTGTGGAGAAGAAAGTGGAAG
TAGAGTTCGACGAGCATGCAGAGGGCAGTAACTACGACGAGCAGGTGGACTTCTACGGCTCCTC
CATGGAGGAGTTCTCTGGAGAAAAGTTGGGGGGCGGTCTAATTGGACACAAACAGGAGACTGCC
CTTGCAGCAGGCTACAGTGAGAACATTGAGATGGTGATGGGGATAAAAGAAGAGGCGTCCCACT
TAGGATTCTCAGCCACCGACAAGCTGTATCCTTGTCAGTGTGGGAAAAGTTTCACGCACAAAAG
TCAGCGAGATCGACACATGAGCATGCACCTCGGTCTGCGCCCGTATGGCTGCAGTGTCTGTGGT
AAGAAATTCAAAATGAAGCACCATCTCGTGGGCCACATGAAAATTCATACCGGCATAAAGCCCT
ACGAGTGTAATATCTGTGCAAAGAGATTTATGTGGAGGGACAGTTTCCACAGGCATGTGACTTC
TTGTACCAAGTCCTATGAAGCTGCAAAGGCTGGGCAGAATACGACTGAGGCTAACTAAAAATAG
GGTCTGGCCCTTGAGTGGCATGCACAAAAATAAACTATGGTAATTAATGCAAATCTGGGCACAG
ATGATGCGTGCCACTTGCTATTATGAGAGAGGCTTAAAAAAAAAGGAAGATATTTCTGAAAGAC
CAGCTCTAAGTAGGCCAATTAAAAGATTTAATTTCTCAAATCTGTATGTTCCCATCCTGGCCTA
GAATGGATGATGGGGATAAGTTCACCCAGTGCCCAGCTGGCAAGACAGCCCTTCCAGCCAGCAG
TGGTTAAGGCAGGGGACTGGATGGCAGACTCTCACACCAGTCCTGCCCAGGTGGCAGCGGCCGG
CTGTCACCATTGTCCCGGGTCTTGTTACATTTGTTCTCCTGGTAGCTTCAGGGCTTCTGGGCTT
TGCTTTGGTAGCTGCGTCACTGGATGCTGCTCCCCTCAAGGCTACAGCGAGGACTCCTGGGCTG
AGCTACGAGCAGAGCTCTGTTTGTTCTATTTTCGTATGTTCTAAAGGTTCTAGTTAAAGCCATG
GTGACATTAGACGGGGCTTCTGAGTCCGAATCAGGAGACAGTGTCACCGTGCTGCAGGCTCTGG
AGAAGGCACAGTTTTATGTTTGTGTTTGGTTAAGTCTTCAGGTGCCAGAGACAGAGCTTTCTAG
TTGGTGTGTTGTCCTAAGCTTCCCTCAGTTAATGGCAGGAGATGACCGGTTTGCAGTGACACAC
GACAGTGCTGGCTAGTAGTGGCCTGTGGCTCCCTGCCTTAGATCACGGTGCTTCCCAACAAGGC
CAGCCAGGGACCACAGCTCATGAGACTAAGCCAGAATGTGTGGCTAAGAGTTCCCTGTGAGCAA
GACACTTATAACAGAAGGCTTGAGAAAAGAATCTTAAAAACACTGGCGTGGGGAGTGCTGTTGT
AGAGGGTGGGCTAGGCAGTATTGTCAGCTTTGTGAGAGCTGGAACATGGCTTCCAAGGGGATGG
GAGCCTACATTAAGCAACATCATCTAGAGACTCTGTTCCCCAGTCACAGAGAAAGCCGCGTTTA
CAAGTCCCAATAGTTTATACACACATGTGCAGGCGCACACACACCCACACTCACACTTCACCAC
CACCATCTCCTCACTCCCGCAAGGACGAGGCTGCCCTTGAGGTCTTTTCTGCATGGTCAGACGT
CTTAGGTTGGAAAGAAAGCTTGTGTTCAGAAAGCTTTTAAGCGTGTGACAGTTCTGAGGCTCTT
GCTGGGTAGGGGTCTAGTGCTCTTTCCATCACTGGAATAATACACTCGGAGCAAAGCAACTTAG
GGAGGAAAGGGTTTGTATTAGCTCACACTACCATCATGGAGGAAACCACAGCAGGAACGGGAAT
GTTGACAGTCCAGACAGTTGGCCAGTCATGCCCACAGGCCACTCCCTCAGTGGAGACTCGCTTC
CTCTATGACTCTAGGTTGTGTCAGAGCTAGCTAGGCAGTAGGACAGGGTTTTACTCCTATATCA
TCTGTTTCGTTCCTAAAGTTCGACTTTCTCTAATATGACAGACATTACTGGCAAAAGTGTCTGA
TATTTAGGCTCTGAACAAAGGATGTACCTTTGACCTTTGTCTGGAAAGAGGAAAGAAAATGTGG
ACTGGCCAGTAAACGTTTGTAATCAAGATTACAAAACAGGGATCTATTTACAAACACTGTATCA
ATCTTGGCATATAAAGCACTTTGTATTAAAACTTTATTATAAGTATAGATGTAGGTTTTTTTTT
TTAACCTAGAAACTAGATGTTACCTCCTAGTGGTTTGCTACATTAAGATCTTCCAGTGTCTGCC
AGTCAGCGACTGTCCTTGTCCCTGAGAAGTGAGTGCAGATGGACAGTCACACTCACAGGCACAC
TCACGCCTCCTACTCTTCACACAGAGGCCAGCGGGTTTAGGGATGACCCGCTGTGTGAGGGCGA
AGTGGTTTTGGCTTCTTAGTATTTCTACACTGGGGCAGTTAAGCCGTTTTGTTGTCAGAAGCAG
CCCTCTTGTTCACACCTACCTGCCTCCCATCGGAGTCTATTCGTACAAGAGCTGAGACCCTTGC
AGAGAAGAATTAGAGGGTAAAAGAACCACCATGGGGACACCCTGGTCCTGGGGTTGTACTGAGT
CAGGATCCTTTGTCATGGTGCTGACAAAGCTTTTGAGTTGGAATGTGGCAAACCCTGTGAGAAG
GTGGGGTGTCATGGTCTAGAATGTGAAGTGAGGCTTCTGGCCTCCCTTTCCCAATAGAGAGTCT
TTCTGGCCGCCTGCCTCCTGCAGTACTAGTCTCTCCCCTCACCACTGCCTTAGAAATCCTCACC
CTTCCGAACAAGCTCGAGTAGTTGTGGGCAGCACTGTCCAGCGTTTCAGGGATTGTCAGTGGCC
CACCAGCAAAGCGCATGTCTCTACACTTGGCTGGTTTTCTCCAGTCCTCATACGAAAGGGCTTC
AAGGCCCCGCTGCTTGCATTTCCTAATCGGCAGGCACCATGGCTTAACTTCTTGGATGTACATC
ACAGGAGCTCCTTTTGTGTTGTGGTTTGCCCTCGTGCTCCTCTGAGCCCTGGCCCATGACCTCG
AATTTCTGTTCTCCCCTTCTCCGCCCACATTCTTAGAGCCCGCATTAAAGGCTCCCCTACATTG
CAGGAAGTGTTTCCTGAACTACTCTGACCTGGGCGGGTTTTTAGCAGTTGGGAAAGCTGCGAGC
TGCAGTGGGTGGCAAAGTTGAGGAATATTTGGGAAAGTCCCTAGGGTCAGGGTGGCACTCCACC
TCGTCCACAAATGTGGTTGTTTCCTAAACTCTCAGATACACGGGGAATGCTGAGGCCAGCGGGC
CAGGATCTAGGCCTCCTGGAATCTAGGCTGCCTTGACTGGTAACTAACTTTATCCAGTGAATCC
TGAGTTGCTTTGGGTTTTGTTCTTGGTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCT
CTCTCTCTCTCTGCTATTTACATATTTAAAGGTACTGTTTTGCAAACCTCTACTGATAGTGCCC
TGTGGGAAGATGCTGGAACGCCGTTTGCAAATGTGATTTTGTTTTTCTTTTTAAATGTTGCTTG
AAGCCTGTGTCGTCTCAGTTGCTGCTGCCTCCTTTCTTTTTATGAGGTTCCCAATGTTTCTTCC
AGAAAGTTATTTTATTTATGCAGGTCAGGTGACTCTTAGGCCCCAGAACCATGGGATGGTAAGC
AGATTGTTGTTAGGTGCGTATCATGGATACTTGGTGAACCACCTGTGTTTTAGAAGTTAAATAG
TTCTCTCTAGAATTGCTGTCTTCAGTGTACAGCGTGGTTTTAATTGAATGTTACTGTTTAATAT
TTTCTTCTTATAGAAGAGACCATGTCCTTTTGTATGACAAGTTTTAATAAATGTTACCTGTCCA
TTTTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012094	(Get FASTA)	NCBI Sequence Viewer
	XP_006234035	(Get FASTA)	NCBI Sequence Viewer
	XP_006234036	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87042	(Get FASTA)	NCBI Sequence Viewer
	EDL93188	(Get FASTA)	NCBI Sequence Viewer
	EDL93189	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022814
	ENSRNOP00000022814.4
	ENSRNOP00000082155.2
	ENSRNOP00000086987
	ENSRNOP00000086987.1
	ENSRNOP00000096140
	ENSRNOP00000096140.1

RefSeq Acc Id:

NP_001012094 ⟸ NM_001012094

- UniProtKB:

Q5PQT4 (UniProtKB/TrEMBL), A0A8I6AJA1 (UniProtKB/TrEMBL), A0A8I5ZT40 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPTNVYSSQIGHQGQSKVRFHQSPTCRTTLNKIGDEMEPGTNSFQVEFPDFSSTILQKLNQQRQ
QGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGR
LVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLAESFE
LGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTN
DSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGMDVHAAYDEHQVSESVNTMQTDHSAQP
SGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGSSMEEFSGEKLGGGLIGHKQETALAAGYS
ENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMK
HHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTTEAN

hide sequence

RefSeq Acc Id:	XP_006234036 ⟸ XM_006233974
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AFN4 (UniProtKB/TrEMBL), A6JUA9 (UniProtKB/TrEMBL), A0A8I5ZT40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLL KNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPT VLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEH EYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWD GMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGS SMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHK SQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT SCTKSYEAAKAGQNTTEAN hide sequence

RefSeq Acc Id:	XP_006234035 ⟸ XM_006233973
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AFN4 (UniProtKB/TrEMBL), A6JUA9 (UniProtKB/TrEMBL), A0A8I5ZT40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLL KNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPT VLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEH EYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWD GMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGS SMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHK SQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT SCTKSYEAAKAGQNTTEAN hide sequence

Ensembl Acc Id:

ENSRNOP00000022814 ⟸ ENSRNOT00000022814

Ensembl Acc Id:

ENSRNOP00000096140 ⟸ ENSRNOT00000117382

Ensembl Acc Id:

ENSRNOP00000096930 ⟸ ENSRNOT00000120094

Ensembl Acc Id:

ENSRNOP00000086987 ⟸ ENSRNOT00000108027

Ensembl Acc Id:

ENSRNOP00000095240 ⟸ ENSRNOT00000095180

Ensembl Acc Id:

ENSRNOP00000082155 ⟸ ENSRNOT00000113168

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQT4-F1-model_v2	AlphaFold	Q5PQT4	1-503	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310287	AgrOrtholog
BioCyc Gene	G2FUF-50105	BioCyc
Ensembl Genes	ENSRNOG00000017017	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022814	ENTREZGENE
	ENSRNOT00000022814.4	UniProtKB/TrEMBL
	ENSRNOT00000108027	ENTREZGENE
	ENSRNOT00000108027.2	UniProtKB/TrEMBL
	ENSRNOT00000113168.2	UniProtKB/TrEMBL
	ENSRNOT00000117382	ENTREZGENE
	ENSRNOT00000117382.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7107163	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	ZnFinger_BTB_dom_contain	UniProtKB/TrEMBL
KEGG Report	rno:311872	UniProtKB/TrEMBL
MGC_CLONE	MGC:93727	IMAGE-MGC_LOAD
NCBI Gene	311872	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 43	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb43	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017017	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I5ZT40	ENTREZGENE
	A0A8I6AFN4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJA1	ENTREZGENE, UniProtKB/TrEMBL
	A6JUA9	ENTREZGENE, UniProtKB/TrEMBL
	F7EZI5_RAT	UniProtKB/TrEMBL
	Q5PQT4	ENTREZGENE
UniProt Secondary	A0A8I5ZT40	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zbtb43	zinc finger and BTB domain containing 43	Zfp297b	zinc finger protein 297B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp297b	zinc finger protein 297B	Zfp297b_predicted	zinc finger protein 297B (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp297b_predicted	zinc finger protein 297B (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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