Tdrd3 (tudor domain containing 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tdrd3 (tudor domain containing 3) Rattus norvegicus
Analyze
Symbol: Tdrd3
Name: tudor domain containing 3
RGD ID: 1310126
Description: Predicted to enable chromatin binding activity; histone reader activity; and transcription coactivator activity. Predicted to be involved in chromatin organization and positive regulation of DNA-templated transcription. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be part of DNA topoisomerase III-beta-TDRD3 complex and exon-exon junction complex. Predicted to be active in nucleus. Orthologous to human TDRD3 (tudor domain containing 3); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306066; tudor domain-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81569,748,754 - 69,911,605 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1569,749,217 - 69,884,656 (+)EnsemblGRCr8
mRatBN7.21563,340,531 - 63,497,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1567,449,294 - 67,576,546 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01568,534,799 - 68,662,049 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01565,431,929 - 65,566,762 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01570,732,164 - 70,864,855 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)Ensemblrn6Rnor6.0
Rnor_5.01574,335,410 - 74,468,101 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41569,605,244 - 69,739,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1562,845,891 - 62,979,450 (+)NCBICelera
RGSC_v3.11569,621,023 - 69,755,345 (+)NCBI
Cytogenetic Map15q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
DNA topoisomerase III-beta-TDRD3 complex  (IBA)
exon-exon junction complex  (IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Tudor: a versatile family of histone methylation 'readers'. Lu R and Wang GG, Trends Biochem Sci. 2013 Nov;38(11):546-55. doi: 10.1016/j.tibs.2013.08.002. Epub 2013 Sep 10.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Perceiving the epigenetic landscape through histone readers. Musselman CA, etal., Nat Struct Mol Biol. 2012 Dec;19(12):1218-27. doi: 10.1038/nsmb.2436.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:20930030   PMID:21172665   PMID:22658674   PMID:22681889   PMID:25931508  


Genomics

Comparative Map Data
Tdrd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81569,748,754 - 69,911,605 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1569,749,217 - 69,884,656 (+)EnsemblGRCr8
mRatBN7.21563,340,531 - 63,497,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1567,449,294 - 67,576,546 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01568,534,799 - 68,662,049 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01565,431,929 - 65,566,762 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01570,732,164 - 70,864,855 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)Ensemblrn6Rnor6.0
Rnor_5.01574,335,410 - 74,468,101 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41569,605,244 - 69,739,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1562,845,891 - 62,979,450 (+)NCBICelera
RGSC_v3.11569,621,023 - 69,755,345 (+)NCBI
Cytogenetic Map15q12NCBI
TDRD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381360,395,533 - 60,573,879 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1360,396,457 - 60,573,879 (+)Ensemblhg38GRCh38
GRCh371360,970,591 - 61,148,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361359,911,823 - 60,046,012 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341359,869,122 - 60,046,012NCBI
Celera1341,929,733 - 42,107,133 (+)NCBICelera
Cytogenetic Map13q21.2NCBI
HuRef1341,662,317 - 41,839,768 (+)NCBIHuRef
CHM1_11360,938,267 - 61,115,685 (+)NCBICHM1_1
T2T-CHM13v2.01359,615,225 - 59,793,547 (+)NCBIT2T-CHM13v2.0
Tdrd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391487,647,598 - 87,782,944 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1487,654,075 - 87,782,940 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381487,416,178 - 87,545,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1487,416,639 - 87,545,504 (+)Ensemblmm10GRCm38
MGSCv371487,816,390 - 87,945,315 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361486,248,429 - 86,377,251 (+)NCBIMGSCv36mm8
Celera1484,929,172 - 85,068,169 (+)NCBICelera
Cytogenetic Map14E1NCBI
cM Map1444.17NCBI
Tdrd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540444,328,795 - 44,457,784 (-)Ensembl
ChiLan1.0NW_00495540444,329,159 - 44,457,958 (-)NCBIChiLan1.0ChiLan1.0
TDRD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21461,913,781 - 62,095,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11360,505,859 - 60,687,137 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01341,568,080 - 41,750,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11360,289,702 - 60,470,245 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1360,290,518 - 60,470,245 (+)EnsemblpanPan2panpan1.1
TDRD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12216,287,721 - 16,449,842 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2216,288,473 - 16,444,635 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2216,265,095 - 16,427,920 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02216,524,378 - 16,687,132 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2216,525,132 - 16,687,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12216,224,234 - 16,386,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02216,249,914 - 16,412,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02216,264,401 - 16,386,815 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tdrd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945135,830,370 - 135,931,283 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493651111,258,898 - 11,348,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1133,258,063 - 33,440,123 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11133,257,556 - 33,440,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,988,674 - 35,171,255 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1338,174,141 - 38,361,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl338,174,990 - 38,361,622 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660575,331,867 - 5,524,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474821,656,003 - 21,815,589 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tdrd3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11237,070,424 - 37,191,143 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tdrd3
900 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:117
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000012440
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156244089297773284Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155720389580107161Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat

Markers in Region
RH132759  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21563,446,011 - 63,446,191 (+)MAPPERmRatBN7.2
Rnor_6.01570,834,287 - 70,834,466NCBIRnor6.0
Rnor_5.01574,437,533 - 74,437,712UniSTSRnor5.0
RGSC_v3.41569,708,829 - 69,709,008UniSTSRGSC3.4
RGSC_v3.41569,928,252 - 69,928,431UniSTSRGSC3.4
Celera1563,091,098 - 63,091,277UniSTS
Celera1562,949,353 - 62,949,532UniSTS
Cytogenetic Map15q12UniSTS
BE119407  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21563,426,170 - 63,426,322 (+)MAPPERmRatBN7.2
Rnor_6.01570,816,222 - 70,816,373NCBIRnor6.0
Rnor_5.01574,419,468 - 74,419,619UniSTSRnor5.0
Celera1562,930,012 - 62,930,163UniSTS
RH 3.4 Map15385.47UniSTS
Cytogenetic Map15q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC081929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000012440   ⟹   ENSRNOP00000012440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1569,749,217 - 69,884,656 (+)Ensembl
mRatBN7.2 Ensembl1563,341,268 - 63,476,094 (+)Ensembl
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110490   ⟹   ENSRNOP00000083043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1569,749,825 - 69,884,513 (+)Ensembl
mRatBN7.2 Ensembl1563,341,235 - 63,476,097 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117994   ⟹   ENSRNOP00000077267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1569,749,217 - 69,884,656 (+)Ensembl
mRatBN7.2 Ensembl1563,341,268 - 63,476,094 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119103   ⟹   ENSRNOP00000086500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1569,749,217 - 69,863,286 (+)Ensembl
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157501   ⟹   ENSRNOP00000104599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1569,749,217 - 69,853,443 (+)Ensembl
RefSeq Acc Id: NM_001012043   ⟹   NP_001012043
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,749,830 - 69,884,657 (+)NCBI
mRatBN7.21563,341,268 - 63,476,097 (+)NCBI
Rnor_6.01570,732,164 - 70,864,855 (+)NCBI
Rnor_5.01574,335,410 - 74,468,101 (+)NCBI
RGSC_v3.41569,605,244 - 69,739,566 (+)RGD
Celera1562,845,891 - 62,979,450 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093361   ⟹   XP_038949289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,756 - 69,884,657 (+)NCBI
mRatBN7.21563,340,532 - 63,476,099 (+)NCBI
RefSeq Acc Id: XM_039093362   ⟹   XP_038949290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,755 - 69,911,605 (+)NCBI
mRatBN7.21563,340,531 - 63,497,208 (+)NCBI
RefSeq Acc Id: XM_039093365   ⟹   XP_038949293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,756 - 69,884,657 (+)NCBI
mRatBN7.21563,340,532 - 63,476,099 (+)NCBI
RefSeq Acc Id: XM_063274315   ⟹   XP_063130385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,754 - 69,878,996 (+)NCBI
RefSeq Acc Id: XR_005493732
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,757 - 69,878,995 (+)NCBI
mRatBN7.21563,340,533 - 63,470,435 (+)NCBI
RefSeq Acc Id: XR_005493733
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81569,748,757 - 69,863,237 (+)NCBI
mRatBN7.21563,340,533 - 63,454,661 (+)NCBI
RefSeq Acc Id: NP_001012043   ⟸   NM_001012043
- UniProtKB: Q66HC1 (UniProtKB/Swiss-Prot),   A0A096MIS7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012440   ⟸   ENSRNOT00000012440
RefSeq Acc Id: XP_038949290   ⟸   XM_039093362
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949289   ⟸   XM_039093361
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949293   ⟸   XM_039093365
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000086500   ⟸   ENSRNOT00000119103
Ensembl Acc Id: ENSRNOP00000083043   ⟸   ENSRNOT00000110490
Ensembl Acc Id: ENSRNOP00000077267   ⟸   ENSRNOT00000117994
RefSeq Acc Id: XP_063130385   ⟸   XM_063274315
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6B7 (UniProtKB/TrEMBL),   A0A8I5ZYD3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104599   ⟸   ENSRNOT00000157501
Protein Domains
Tudor   UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HC1-F1-model_v2 AlphaFold Q66HC1 1-651 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310126 AgrOrtholog
BioCyc Gene G2FUF-12928 BioCyc
Ensembl Genes ENSRNOG00000009034 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000110490 ENTREZGENE
  ENSRNOT00000117994 ENTREZGENE
  ENSRNOT00000117994.1 UniProtKB/Swiss-Prot
  ENSRNOT00000119103 ENTREZGENE
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot
  2.40.50.770 UniProtKB/Swiss-Prot
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7113366 IMAGE-MGC_LOAD
InterPro RMI1_N UniProtKB/Swiss-Prot
  RMI1_N_2 UniProtKB/Swiss-Prot
  Tudor UniProtKB/Swiss-Prot
  Tudor_TDRD3 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBA-like_sf UniProtKB/Swiss-Prot
  UBA_TDRD3 UniProtKB/Swiss-Prot
KEGG Report rno:306066 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93931 IMAGE-MGC_LOAD
NCBI Gene 306066 ENTREZGENE
PANTHER SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED UniProtKB/Swiss-Prot
  TUDOR DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot
Pfam RMI1_N UniProtKB/Swiss-Prot
  TUDOR UniProtKB/Swiss-Prot
  UBA_7 UniProtKB/Swiss-Prot
PhenoGen Tdrd3 PhenoGen
PROSITE TUDOR UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009034 RatGTEx
SMART TUDOR UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot
UniProt A0A096MIS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6B7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LLX3_RAT UniProtKB/TrEMBL
  Q66HC1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tdrd3  tudor domain containing 3  Tdrd3_predicted  tudor domain containing 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tdrd3_predicted  tudor domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED