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Gene: Dnajc6 (DnaJ heat shock protein family (Hsp40) member C6) Rattus norvegicus

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Symbol:

Dnajc6

Name:

DnaJ heat shock protein family (Hsp40) member C6

RGD ID:

1309900

Description:

Predicted to enable clathrin binding activity. Predicted to be involved in clathrin-dependent endocytosis; regulation of clathrin coat assembly; and synaptic vesicle uncoating. Predicted to act upstream of or within clathrin coat disassembly and regulation of clathrin-dependent endocytosis. Predicted to be located in synapse. Predicted to be active in cytoplasm; postsynaptic density; and vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 19A. Orthologous to human DNAJC6 (DnaJ heat shock protein family (Hsp40) member C6); PARTICIPATES IN altered clathrin-dependent synaptic vesicle endocytosis; clathrin-dependent synaptic vesicle endocytosis; Parkinson's disease pathway; INTERACTS WITH 17beta-estradiol; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DnaJ (Hsp40) homolog, subfamily C, member 6; LOC313409; putative tyrosine-protein phosphatase auxilin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	121,232,532 - 121,398,775 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	121,235,425 - 121,398,775 (+)	Ensembl				GRCr8
mRatBN7.2	5	116,120,069 - 116,283,448 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	116,119,676 - 116,283,448 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	118,690,704 - 118,836,807 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	120,416,048 - 120,562,150 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	120,467,359 - 120,613,473 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	120,330,372 - 120,492,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	120,340,646 - 120,492,487 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	124,210,621 - 124,370,661 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	122,155,150 - 122,309,090 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	114,661,979 - 114,806,295 (+)	NCBI		Celera
RGSC_v3.1	5	122,205,852 - 122,314,329 (+)	NCBI
Cytogenetic Map	5	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Combined Cerebellar and Peripheral Ataxia with Hearing Loss and Diabetes Mellitus (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

intellectual disability (ISO)

Parkinson's disease (ISO)

Parkinson's disease 19A (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

carbamazepine (ISO)

chenodeoxycholic acid (ISO)

coumarin (ISO)

cyclosporin A (ISO)

deoxycholic acid (ISO)

diclofenac (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

formaldehyde (ISO)

FR900359 (ISO)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

hexadecanoic acid (ISO)

lead(0) (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methotrexate (ISO)

nefazodone (ISO)

okadaic acid (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sirolimus (EXP)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

Triptolide (EXP)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

clathrin coat disassembly (ISO)

clathrin-dependent endocytosis (IBA,IEA,ISO)

regulation of clathrin coat assembly (IEA,ISO)

regulation of clathrin-dependent endocytosis (ISO)

synaptic vesicle recycling (IEA,ISO)

synaptic vesicle uncoating (IBA,IEA,ISO)

Cellular Component

clathrin-coated vesicle (IEA)

cytoplasm (IBA)

cytoplasmic vesicle (IEA)

extrinsic component of presynaptic endocytic zone membrane (IEA,ISO)

postsynaptic density (IBA,IEA,ISO)

presynapse (IEA)

synapse (IEA,ISO)

vesicle (IBA)

Molecular Function

clathrin binding (IBA)

hydrolase activity (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

SH3 domain binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

altered clathrin-dependent synaptic vesicle endocytosis (ISO)

clathrin-dependent synaptic vesicle endocytosis (ISO)

endocytosis pathway (IEA)

Parkinson's disease pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Synaptojanin 1 mutation in Parkinson's disease brings further insight into the neuropathological mechanisms.	Drouet V and Lesage S, Biomed Res Int. 2014;2014:289728. doi: 10.1155/2014/289728. Epub 2014 Sep 16.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Impaired intracellular trafficking defines early Parkinson's disease.	Hunn BH, etal., Trends Neurosci. 2015 Mar;38(3):178-88. doi: 10.1016/j.tins.2014.12.009. Epub 2015 Jan 29.
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Synaptic vesicle endocytosis.	Saheki Y and De Camilli P, Cold Spring Harb Perspect Biol. 2012 Sep 1;4(9):a005645. doi: 10.1101/cshperspect.a005645.

Additional References at PubMed

PMID:16262722	PMID:17114649	PMID:20160091	PMID:21482805	PMID:22393045	PMID:28131823

Genomics

Comparative Map Data

Dnajc6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	121,232,532 - 121,398,775 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	121,235,425 - 121,398,775 (+)	Ensembl				GRCr8
mRatBN7.2	5	116,120,069 - 116,283,448 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	116,119,676 - 116,283,448 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	118,690,704 - 118,836,807 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	120,416,048 - 120,562,150 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	120,467,359 - 120,613,473 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	120,330,372 - 120,492,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	120,340,646 - 120,492,487 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	124,210,621 - 124,370,661 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	122,155,150 - 122,309,090 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	114,661,979 - 114,806,295 (+)	NCBI		Celera
RGSC_v3.1	5	122,205,852 - 122,314,329 (+)	NCBI
Cytogenetic Map	5	q33	NCBI

DNAJC6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	65,264,749 - 65,415,871 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	65,248,219 - 65,415,871 (+)	Ensembl			hg38	GRCh38
GRCh37	1	65,730,432 - 65,881,554 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	65,503,018 - 65,654,140 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	65,442,450 - 65,593,573	NCBI
Celera	1	64,021,163 - 64,172,220 (+)	NCBI		Celera
Cytogenetic Map	1	p31.3	NCBI
HuRef	1	63,839,137 - 63,990,340 (+)	NCBI		HuRef
CHM1_1	1	65,846,654 - 65,997,823 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	65,142,745 - 65,293,848 (+)	NCBI		T2T-CHM13v2.0

Dnajc6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	101,353,751 - 101,499,996 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	101,353,828 - 101,499,996 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	101,496,648 - 101,642,799 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	101,496,631 - 101,642,799 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	101,169,253 - 101,315,404 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	101,048,526 - 101,140,731 (+)	NCBI		MGSCv36	mm8
Celera	4	99,840,177 - 99,986,461 (+)	NCBI		Celera
Cytogenetic Map	4	C6	NCBI
cM Map	4	46.89	NCBI

Dnajc6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	25,269,466 - 25,377,641 (-)	Ensembl
ChiLan1.0	NW_004955423	25,269,459 - 25,382,664 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJC6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	161,446,599 - 161,607,811 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	160,597,432 - 160,758,627 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	64,501,805 - 64,662,999 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	66,389,807 - 66,550,886 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	66,399,968 - 66,550,879 (+)	Ensembl			panPan2	panpan1.1

DNAJC6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	44,882,111 - 45,021,152 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	44,884,283 - 45,120,203 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	44,938,863 - 45,077,971 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	45,062,677 - 45,201,688 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	45,061,729 - 45,201,677 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	45,028,100 - 45,167,200 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	44,972,606 - 45,111,645 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	45,223,560 - 45,362,686 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dnajc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	78,372,295 - 78,520,601 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936692	2,741,632 - 2,834,078 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936692	2,788,477 - 2,836,094 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJC6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	146,989,351 - 147,155,131 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	146,990,115 - 147,161,010 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	135,395,465 - 135,566,139 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJC6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	67,661,187 - 67,824,822 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	67,660,680 - 67,809,086 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	49,732,881 - 49,896,207 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajc6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	29,398,544 - 29,485,165 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624742	29,397,811 - 29,525,886 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dnajc6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	52,916,507 - 53,065,839 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dnajc6
716 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1071
Count of miRNA genes:	339
Interacting mature miRNAs:	481
Transcripts:	ENSRNOT00000064077
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	84630798	129630798	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	84630798	129630798	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1582212	Livw2	Liver weight QTL 2	3.5	0.0004	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	5	104018576	124314782	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	92583776	137583776	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84630798	129630798	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	95062526	133270832	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1600362	Mcs19	Mammary carcinoma susceptibility QTL 19	2.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	82032155	127032155	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	89369373	134369373	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	97492524	133270832	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	95062526	133270832	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	92881678	137881678	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

D5Rhw2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,215,221 - 116,215,425 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,424,289 - 120,424,492	NCBI	Rnor6.0
Rnor_5.0	5	124,304,325 - 124,304,528	UniSTS	Rnor5.0
RGSC_v3.4	5	122,241,372 - 122,241,575	UniSTS	RGSC3.4
Celera	5	114,745,148 - 114,745,351	UniSTS
Cytogenetic Map	5	q33	UniSTS

D5Rhw3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,259,680 - 116,259,847 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,468,749 - 120,468,915	NCBI	Rnor6.0
Rnor_5.0	5	124,346,857 - 124,347,023	UniSTS	Rnor5.0
RGSC_v3.4	5	122,285,349 - 122,285,515	UniSTS	RGSC3.4
Celera	5	114,782,645 - 114,782,811	UniSTS
Cytogenetic Map	5	q33	UniSTS

D5Rhw1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,206,626 - 116,206,836 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,415,696 - 120,415,905	NCBI	Rnor6.0
Rnor_5.0	5	124,295,732 - 124,295,941	UniSTS	Rnor5.0
RGSC_v3.4	5	122,232,779 - 122,232,988	UniSTS	RGSC3.4
Celera	5	114,736,545 - 114,736,764	UniSTS
Cytogenetic Map	5	q33	UniSTS

BF393615

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,262,749 - 116,262,922 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,471,817 - 120,471,989	NCBI	Rnor6.0
Rnor_5.0	5	124,349,925 - 124,350,097	UniSTS	Rnor5.0
RGSC_v3.4	5	122,288,417 - 122,288,589	UniSTS	RGSC3.4
Celera	5	114,785,713 - 114,785,885	UniSTS
RH 3.4 Map	5	787.6	UniSTS
Cytogenetic Map	5	q33	UniSTS

BE102465

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,281,103 - 116,281,263 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,490,171 - 120,490,330	NCBI	Rnor6.0
Rnor_5.0	5	124,368,328 - 124,368,487	UniSTS	Rnor5.0
RGSC_v3.4	5	122,306,771 - 122,306,930	UniSTS	RGSC3.4
Celera	5	114,803,976 - 114,804,135	UniSTS
RH 3.4 Map	5	788.3	UniSTS
Cytogenetic Map	5	q33	UniSTS

RH137225

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,155,236 - 116,155,430 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,365,565 - 120,365,758	NCBI	Rnor6.0
Rnor_5.0	5	124,245,441 - 124,245,634	UniSTS	Rnor5.0
RGSC_v3.4	5	122,180,063 - 122,180,256	UniSTS	RGSC3.4
Celera	5	114,686,470 - 114,686,663	UniSTS
RH 3.4 Map	5	788.3	UniSTS
Cytogenetic Map	5	q33	UniSTS

RH140626

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	116,281,778 - 116,281,986 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	120,490,846 - 120,491,053	NCBI	Rnor6.0
Rnor_5.0	5	124,369,003 - 124,369,210	UniSTS	Rnor5.0
RGSC_v3.4	5	122,307,446 - 122,307,653	UniSTS	RGSC3.4
Celera	5	114,804,651 - 114,804,858	UniSTS
RH 3.4 Map	5	788.9	UniSTS
Cytogenetic Map	5	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	9	48	164	72	71	40	67	40	6	289	145	11	143	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001415921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000086259 ⟹ ENSRNOP00000070493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	121,246,010 - 121,398,747 (+)	Ensembl
mRatBN7.2 Ensembl	5	116,130,676 - 116,283,448 (+)	Ensembl
Rnor_6.0 Ensembl	5	120,340,646 - 120,492,442 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086539 ⟹ ENSRNOP00000070257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	121,246,010 - 121,398,747 (+)	Ensembl
mRatBN7.2 Ensembl	5	116,130,676 - 116,283,448 (+)	Ensembl
Rnor_6.0 Ensembl	5	120,340,735 - 120,492,487 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110252 ⟹ ENSRNOP00000086865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	121,246,745 - 121,398,775 (+)	Ensembl
mRatBN7.2 Ensembl	5	116,119,676 - 116,283,448 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113921 ⟹ ENSRNOP00000095523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	121,290,199 - 121,398,775 (+)	Ensembl
mRatBN7.2 Ensembl	5	116,174,863 - 116,283,448 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116178 ⟹ ENSRNOP00000084012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	121,246,013 - 121,398,747 (+)	Ensembl
mRatBN7.2 Ensembl	5	116,199,041 - 116,283,448 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130808 ⟹ ENSRNOP00000109452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	121,235,425 - 121,398,775 (+)	Ensembl

RefSeq Acc Id:

NM_001415921 ⟹ NP_001402850

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	121,290,199 - 121,398,775 (+)	NCBI
mRatBN7.2	5	116,174,871 - 116,283,448 (+)	NCBI

RefSeq Acc Id:

XM_006238447 ⟹ XP_006238509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	121,232,532 - 121,398,763 (+)	NCBI
mRatBN7.2	5	116,120,069 - 116,283,436 (+)	NCBI
Rnor_6.0	5	120,330,372 - 120,492,503 (+)	NCBI
Rnor_5.0	5	124,210,621 - 124,370,661 (+)	NCBI

Sequence:

show sequence

AGGCACTAAGAGCCCGAGGCTGCTGTCCGTGCTGCGGCGGTGGCGTGCGGGCCGGCGGCTGAGG
AGAATGCGATCGGCTTTCCGGGCGGAGCGGAGTGCCTCATCTCCAGACATGGAGCCCAGCTATG
GGGGAGGCCTTTTTGATATGGTGAAAGGTGGTGCAGGTAGGCTATTCAGTAACCTGAAGGACAA
CTTGAAAGACACCCTCAAAGATACATCCTCCAGAGTCATCCAGTCTGTTAGCAGCTACACAAAG
GGAGACCTAGACTTTACTTATGTCACTTCCAGGATTATCGTGATGTCCTTTCCTATGGACAGTG
TTGACATAGGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGATTCCAGACATCTTGA
CCACTACACAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTC
TCAGAGTGCAGTTGGCCCATCAGGCAGGCCCCAAGTCTACACAACCTGTTTGCTGTGTGTCGGA
ATATGTATAACTGGCTGCTGCAGAATCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACG
GGCCGCATCATCAATTCTGGTTGGTGCTATGTTCATTTTCTGTAATCTCTACTCTACGCCTGGC
CCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAATTGGACTGTCTCCGTCCCACAGGAGGT
ACTTAGGCTACATGTGTGACCTACTTGCAGATAAGCCCTACCGTCCTCACTTCAAGCCGCTCAC
AATCAAGGCAATCACTGTCAGCCCAATTCCCTTCTTCAATAAACAGAGGAATGGGTGCCGCCCT
TACTGTGACGTACTGATTGGAGAAACTAAAATATTCTCAACATGCACAGACTTCGAACGAATGA
AAGAATACCGTGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAGTCCAAGGTGACGT
CATTGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCTAAGGTGACCAAC
ACACAGATATTCCAGCTCCAGTTTCATTCTGGATTTATACCACTGGACACAACAGTTTTAAAGT
TCACCAAGCCTGAGTTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGAC
ACTGGATATAGAAGTACAGCCCCAAGACAAAGTGATCGACCTAACTCCACCATGGGAGCACTAC
TGCACAAAGGATGTGAACCCCAGCATCCTCTTCTCCTCTCAGCAGGAGCATCAGGATACTCTGG
CCTTAGGGGGTCAGGCTCCAGCAGATCTCCCTCCAGACCATCCGAGGAATCTTGGGCAAGGAGG
CTTCTTTGCCTCTCTGTGTTGGCAAGATCAGAAATCAGAGAAGTCACGGTGTGAGGAGGACCAC
GCAGCCCTGGTGAATCAGGAAAGCGAGCAGTCGGATGATGAACTACTGACTCTCTCAAGCCCAC
ATGGCAATGCTGATGGTGACAAGCCTCATGGAGCCAAGAAGCCTGGCAAAAAGCAGCAGGAGCC
AGCTGCGCCTCCTCCCCCAGAGGAGGTGGACCTTCTGGGCCTGGAAGGGTCCGATGTGAGCACG
AACTTCTCCCCCTTGGCAGCTCCTCCCAGCAATTCTGAACTGCTGAGTGACCTGTTTGGGGGTG
GAGGTGCCACAGGTCCTGCCCAGGCAGGACAGGTTGGAGTCGAAGATGTGTTTCACCCAAGTGG
ACCTGCGTCTGCGCAGTCCACACCACGCCGAGCCACCACTTCCGCCTCTGCATCGCCAACCCTA
AGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATT
TGTTGGGCTCCTTCCTGAACACATCCAATGCTTCTAGCGACCCCTTTCTGCAGCCCACGAGAAG
CCCTTCCCCTACAGTGCATGCTTCTAGCACTCCTGCTGTGAACATCCAACCAGACATTGCTGGA
GGTTGGGACTGGCATGCCAAACCAGGAGGTTTTGGGATGGGAAGCAAATCGGCTGCCACCAGCC
CAACAGGCTCAACACACGGCACCCCTACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGC
TGACTTGGGGACACTAGGCAGCTCTTCATTTGCCAGCAAACCCACCACACCAACTGGATTGGGT
GGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCGTCCCCACAGCCCATGGGTGGAGGGTGGC
AGCAGCCAGCCGGCTACAACTGGCAGCAGGCACAGCCTAAGCCACAGTCTAGTATGCCTCACTC
CTCCCCTCAGAACCGACCCAATTACAACGTGAGCTTCTCAGCTATGCCTGCAGGGCAGAGCGAC
CGTGGAAAAGGATCTACTAACTTAGAAGGAAAACAGAAGGCTGCTGACTTTGAAGATCTGCTTT
CCAGTCAAGGCTTCAATGCCCACAAAGACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAAA
GGAGGAAATGGCTAAGGAAATGGATCCTGAGAAACTGAAGATCCTGGAGTGGATAGAAGGCAAA
GAGAGAAACATCAGAGCCCTGCTTTCCACAATGCACACTGTGCTGTGGGCTGGGGAGACCAAGT
GGAAACCTGTGGGCATGGCAGACCTGGTGACGCCAGAGCAAGTGAAGAAGGTGTACAGGAGAGC
CGTGCTAGTGGTGCACCCCGACAAGGCTACTGGGCAACCCTATGAACAATATGCAAAGATGATC
TTCATGGAGCTAAATGATGCCTGGTCCGAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAAT
TTGTGAGCTTTTCTATGCTGGCTGCAGTCCTGTGATCATGCTTAGTGTGTACCACGGTTCTGAG
ATTTTCACAGATGAACCAAAAATTCTAGTAATGTATTTCCAGTACTAAACTGTTAAGTTCCTCG
TGAATTCATTTCTCATGATAAGGAATGTGAACATTGGGTTTCTTGAAGTCCGTAGCACCGAGAG
GAACACTAGTGAACTGACCTTGCAGAGTCATGAAATCCCAGCCTGCCCTTTGGGGAAGCCTATT
CAGCATTTTGCCTGGGGAAATAGGACCGTGGCCACCCAAGGCGGAGGCCTGACATCCATCTCAC
TGTCTGAGAGTAAGATTTATGAGTGGACATTATGGTAGTTGGATTACATAATGGTTTTAAGGAA
ATGATTTAGGGATTGTGTATGTGTGGTTTTTGTTTTTAAAGATGTAATTTGAGCAATGGCTTTA
CACAAACTCCAAGAATATCACCAACCAAGTATTTTTTAATGGAAACTTACTGAAGCCTTTATAG
CTTCTTCAGTTTGTGTCTTTTGGTCAAGAGCATTAACAATCATAGAAGTGGCTAAATGGTGGGA
GGTGGTTATGCAGAAATCTAGGCATTATCCTTAACTTTTCCTGGATGCACTAAGCCCAAGCACA
TGATAGCTGAAGAAACCAGGAGCCCTAAGATGTGTTGACTCCAGGTCAGAACTTTGGGGGTACT
GGCTCCTTTCCCCTTTAAATTTGCAGTTGATTAAAGAAAAACCTTTAAATGCTACCACCACCAT
AATTCCAAACCTATTTGAAATCCCCCTTCTAATTGTTGCCACGAGGCTCAGTGCTCTTTCTTTT
GCTTAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGTAAAGCAGTTTGGCTCATTCACATTC
ACACTTTGTGTAGACCTGGAGTTCTGGTGATTGCAAACCAGGGGGGAAATGGAGAAGATAACAC
TGAGTACTATTTAGAAAGGGTTTGGTTGGGGAGAGAGCTGTGGTGTGCCTTCAGATCCAATTGG
ATAGCTTGCCAGTTTGAGGAGTCAGAGTCCCACCCACCCAGTGAATCTGGGCCCCCACCCCTGG
GATTATTTCCAATGGGTTTGCTGTTGGATGCATGTGAAAACTATGTAAGAATGCAACTTTCCCA
GACCGACTGGTTGCAATTTAGTCCAGTGCTCAGAGCTTCCCATTGTGCAAGGGAGGCAGCTGGT
ACTGCTGGGACTTTGCTAGGTCTCCTGGTGAGCACACGCGCAGCATCTATCTATCCATCCATAT
ATGCATATGAGTATGTCTAGTGTGCACATACACATTCACAAAGCGGGTGGTCAAAAAGATTATC
ATGCTGATCTTAAAAGGTTCACATTCAATATTGTGAAAAGCTTTCAAAAGTTTGTTTTTCAAAG
ACAATCATTTTGTTGGGTTGTTTCTGTTTTAATATTCTTGTGACAAACTAAACCGAAAAAGCAG
CATGTCAGAAATAATTTTGGTTCCATATAGACCTCTCTTCTCTCTTTTCTTTTAAATTATAAAA
GTTCATTATTTATTTTGCCTTTTACTGATAATGTGAAATTCTCAAAAAAAATATTCTCTTTAAA
ATATGCAGTTGTAAACTCTTCAAAGTAACCATGACAACCTAGGTGTTATTTATTAAGGTATTAT
ACAATGATGTCTGACCCAGTATGTGCTTGTCCTCTTTAAGATTGGAATGTGAGACATGTTGCTG
TGACCTGTTTTATTTTTTGTTCTGTTTTGTTTTGTTTTTTTTCTGCCTCATTCCACATTTGTAG
ATATTGTGTGAACTACAGTATATAATGACAATAATTAAGAGGATATTATGTGGCTGCCACATAC
ATTTTGAGGTGGTAGAACTATATTAGCTTTATATCATGTTCGCATAGGTCATTAATGTTCATGA
TTTAAATACCATTAAACGTTATGCGATTAGCAATGAGAAAGAACCCCTCCTTAAATCTGGGAGT
TTCCCCACCGCTCTTCCCCAGATGCATTATGATTCTGGATGCCTGTCTATCTCAAAACTCTTAA
CACATGCAGACCAATAAGTTCTGCATTCCTTTTAAATACCAGGTCGTGACAGTTTGTTGTTGGT
CAGATTCACTGTCTCATTCATATTTATTGTAATATATTTTTGTTTTGTAAATACGTTAAACAAA
ACAAAATGTCATTGTTTAAAATATTTGTAATGTATATTAAAAAGATAAAAAATA

hide sequence

RefSeq Acc Id:

XM_006238448 ⟹ XP_006238510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	121,243,274 - 121,398,763 (+)	NCBI
mRatBN7.2	5	116,130,379 - 116,283,436 (+)	NCBI
Rnor_6.0	5	120,339,874 - 120,492,503 (+)	NCBI
Rnor_5.0	5	124,210,621 - 124,370,661 (+)	NCBI

Sequence:

show sequence

TAAGTTAGATGTCATCACACTTGGCCACCTGGTCTTAAAATGGCACTTGTTAGTTACCTCATTG
TCACGTGCCATTTTTCCTTACAGCATTTGCTGCCACTTGTGGTTTCATATTGCTTGTCTGAATC
CTCTCACCTGAAGGTAAAAATTGCTATGAGGGCAGACTTGCCTGCTCCTATCCACTGGAACCCT
AACTGGTAGAACTAGGCCTGGCAAAAATGACCGTTGAATGAGTGACAGAGGAAGGGAGGGATGT
GCCTGTGTTATAGAATGATACAAAATTCCATGTGTAAAGAACGACTAAAAGGTTTGCTGCAAAC
TTCTTTGCCTTTCAGTAGAGGAGTCTACTGGTCTGGATTCCTCGTACCTGGTCCTGGCTGAGTC
ACTGACAGGCTGGTTTGCAAAGCTTCCTTGTTTATCTGCTTATATCTTGGGGAAGAAGCTTTAG
GCACCTGTGGTCTTGAAGCAGACATGGGCCACTCTAGGGCACCTACTGCCTCTGTGTGGTGCCA
CCCGAGAGCAGAGCTTGGGGGTCGTTCCTGTACACTACTCTGTCTGCAGGACGAAGAGCTGTGC
AGGACCCACCCACAGGTGTTTATTGAGTAAATGAAGCAGAGAGTGGGTACAAGGAGGAAGCTCA
GAGTTCGTTATCCCCTCCAAAGTCACTTGAAAATAAGTCTGGACCACAGCGCAGACCTTCCAGG
TTCAACGTGAACCAAGCCTCTCTGGAAGCAAGAAGAAACTAGGCAGTTGGATCTCCACTCCAAG
GAAGGAAGAAGGGCGAACCTAGGCTCCAGATCCGATTCCATGCCATGTTTTGGAAGTCGTGTTT
ACGTCTGCCTTCATCCTCATCCCTTCCGTTTCAGCATAAGCAAAATTATAACCCTGCACACTGA
CTCGTATGCCATTATCATAGCCTGGCTGCTCCTGCGTTGAGGGACTTCGCCCCCGGGATCGCTG
ACTGTCTGTGAATGACAAATCCAAAGTCAGGGGTTGCAGAGTCAGCCGGACTTGCCTGCTCTCG
TGCAGCAGCGGGAGGAAACAGAATGAAAGATTCTGAAAATAAAGGTGCCTCATCTCCAGACATG
GAGCCCAGCTATGGGGGAGGCCTTTTTGATATGGTGAAAGGTGGTGCAGGTAGGCTATTCAGTA
ACCTGAAGGACAACTTGAAAGACACCCTCAAAGATACATCCTCCAGAGTCATCCAGTCTGTTAG
CAGCTACACAAAGGGAGACCTAGACTTTACTTATGTCACTTCCAGGATTATCGTGATGTCCTTT
CCTATGGACAGTGTTGACATAGGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGATT
CCAGACATCTTGACCACTACACAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTT
CCACAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCCCCAAGTCTACACAACCTGTTT
GCTGTGTGTCGGAATATGTATAACTGGCTGCTGCAGAATCCCAAAAATGTCTGTGTTGTCCACT
GCTTGGATGGACGGGCCGCATCATCAATTCTGGTTGGTGCTATGTTCATTTTCTGTAATCTCTA
CTCTACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAATTGGACTGTCTCCG
TCCCACAGGAGGTACTTAGGCTACATGTGTGACCTACTTGCAGATAAGCCCTACCGTCCTCACT
TCAAGCCGCTCACAATCAAGGCAATCACTGTCAGCCCAATTCCCTTCTTCAATAAACAGAGGAA
TGGGTGCCGCCCTTACTGTGACGTACTGATTGGAGAAACTAAAATATTCTCAACATGCACAGAC
TTCGAACGAATGAAAGAATACCGTGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAG
TCCAAGGTGACGTCATTGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGC
TAAGGTGACCAACACACAGATATTCCAGCTCCAGTTTCATTCTGGATTTATACCACTGGACACA
ACAGTTTTAAAGTTCACCAAGCCTGAGTTGGATGCATGTGATGTACCAGAAAAATATCCTCAGC
TGTTCCAAGTGACACTGGATATAGAAGTACAGCCCCAAGACAAAGTGATCGACCTAACTCCACC
ATGGGAGCACTACTGCACAAAGGATGTGAACCCCAGCATCCTCTTCTCCTCTCAGCAGGAGCAT
CAGGATACTCTGGCCTTAGGGGGTCAGGCTCCAGCAGATCTCCCTCCAGACCATCCGAGGAATC
TTGGGCAAGGAGGCTTCTTTGCCTCTCTGTGTTGGCAAGATCAGAAATCAGAGAAGTCACGGTG
TGAGGAGGACCACGCAGCCCTGGTGAATCAGGAAAGCGAGCAGTCGGATGATGAACTACTGACT
CTCTCAAGCCCACATGGCAATGCTGATGGTGACAAGCCTCATGGAGCCAAGAAGCCTGGCAAAA
AGCAGCAGGAGCCAGCTGCGCCTCCTCCCCCAGAGGAGGTGGACCTTCTGGGCCTGGAAGGGTC
CGATGTGAGCACGAACTTCTCCCCCTTGGCAGCTCCTCCCAGCAATTCTGAACTGCTGAGTGAC
CTGTTTGGGGGTGGAGGTGCCACAGGTCCTGCCCAGGCAGGACAGGTTGGAGTCGAAGATGTGT
TTCACCCAAGTGGACCTGCGTCTGCGCAGTCCACACCACGCCGAGCCACCACTTCCGCCTCTGC
ATCGCCAACCCTAAGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCCA
CCAGGTCAGGATTTGTTGGGCTCCTTCCTGAACACATCCAATGCTTCTAGCGACCCCTTTCTGC
AGCCCACGAGAAGCCCTTCCCCTACAGTGCATGCTTCTAGCACTCCTGCTGTGAACATCCAACC
AGACATTGCTGGAGGTTGGGACTGGCATGCCAAACCAGGAGGTTTTGGGATGGGAAGCAAATCG
GCTGCCACCAGCCCAACAGGCTCAACACACGGCACCCCTACCCATCAGAGCAAGCCCCAGACTC
TGGATCCCTTCGCTGACTTGGGGACACTAGGCAGCTCTTCATTTGCCAGCAAACCCACCACACC
AACTGGATTGGGTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCGTCCCCACAGCCCATG
GGTGGAGGGTGGCAGCAGCCAGCCGGCTACAACTGGCAGCAGGCACAGCCTAAGCCACAGTCTA
GTATGCCTCACTCCTCCCCTCAGAACCGACCCAATTACAACGTGAGCTTCTCAGCTATGCCTGC
AGGGCAGAGCGACCGTGGAAAAGGATCTACTAACTTAGAAGGAAAACAGAAGGCTGCTGACTTT
GAAGATCTGCTTTCCAGTCAAGGCTTCAATGCCCACAAAGACAAAAAGGGGCCTCGAACAATAG
CTGAGATGAGAAAGGAGGAAATGGCTAAGGAAATGGATCCTGAGAAACTGAAGATCCTGGAGTG
GATAGAAGGCAAAGAGAGAAACATCAGAGCCCTGCTTTCCACAATGCACACTGTGCTGTGGGCT
GGGGAGACCAAGTGGAAACCTGTGGGCATGGCAGACCTGGTGACGCCAGAGCAAGTGAAGAAGG
TGTACAGGAGAGCCGTGCTAGTGGTGCACCCCGACAAGGCTACTGGGCAACCCTATGAACAATA
TGCAAAGATGATCTTCATGGAGCTAAATGATGCCTGGTCCGAATTTGAAAACCAAGGCCAAAAG
CCCTTGTATTAATTTGTGAGCTTTTCTATGCTGGCTGCAGTCCTGTGATCATGCTTAGTGTGTA
CCACGGTTCTGAGATTTTCACAGATGAACCAAAAATTCTAGTAATGTATTTCCAGTACTAAACT
GTTAAGTTCCTCGTGAATTCATTTCTCATGATAAGGAATGTGAACATTGGGTTTCTTGAAGTCC
GTAGCACCGAGAGGAACACTAGTGAACTGACCTTGCAGAGTCATGAAATCCCAGCCTGCCCTTT
GGGGAAGCCTATTCAGCATTTTGCCTGGGGAAATAGGACCGTGGCCACCCAAGGCGGAGGCCTG
ACATCCATCTCACTGTCTGAGAGTAAGATTTATGAGTGGACATTATGGTAGTTGGATTACATAA
TGGTTTTAAGGAAATGATTTAGGGATTGTGTATGTGTGGTTTTTGTTTTTAAAGATGTAATTTG
AGCAATGGCTTTACACAAACTCCAAGAATATCACCAACCAAGTATTTTTTAATGGAAACTTACT
GAAGCCTTTATAGCTTCTTCAGTTTGTGTCTTTTGGTCAAGAGCATTAACAATCATAGAAGTGG
CTAAATGGTGGGAGGTGGTTATGCAGAAATCTAGGCATTATCCTTAACTTTTCCTGGATGCACT
AAGCCCAAGCACATGATAGCTGAAGAAACCAGGAGCCCTAAGATGTGTTGACTCCAGGTCAGAA
CTTTGGGGGTACTGGCTCCTTTCCCCTTTAAATTTGCAGTTGATTAAAGAAAAACCTTTAAATG
CTACCACCACCATAATTCCAAACCTATTTGAAATCCCCCTTCTAATTGTTGCCACGAGGCTCAG
TGCTCTTTCTTTTGCTTAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGTAAAGCAGTTTGG
CTCATTCACATTCACACTTTGTGTAGACCTGGAGTTCTGGTGATTGCAAACCAGGGGGGAAATG
GAGAAGATAACACTGAGTACTATTTAGAAAGGGTTTGGTTGGGGAGAGAGCTGTGGTGTGCCTT
CAGATCCAATTGGATAGCTTGCCAGTTTGAGGAGTCAGAGTCCCACCCACCCAGTGAATCTGGG
CCCCCACCCCTGGGATTATTTCCAATGGGTTTGCTGTTGGATGCATGTGAAAACTATGTAAGAA
TGCAACTTTCCCAGACCGACTGGTTGCAATTTAGTCCAGTGCTCAGAGCTTCCCATTGTGCAAG
GGAGGCAGCTGGTACTGCTGGGACTTTGCTAGGTCTCCTGGTGAGCACACGCGCAGCATCTATC
TATCCATCCATATATGCATATGAGTATGTCTAGTGTGCACATACACATTCACAAAGCGGGTGGT
CAAAAAGATTATCATGCTGATCTTAAAAGGTTCACATTCAATATTGTGAAAAGCTTTCAAAAGT
TTGTTTTTCAAAGACAATCATTTTGTTGGGTTGTTTCTGTTTTAATATTCTTGTGACAAACTAA
ACCGAAAAAGCAGCATGTCAGAAATAATTTTGGTTCCATATAGACCTCTCTTCTCTCTTTTCTT
TTAAATTATAAAAGTTCATTATTTATTTTGCCTTTTACTGATAATGTGAAATTCTCAAAAAAAA
TATTCTCTTTAAAATATGCAGTTGTAAACTCTTCAAAGTAACCATGACAACCTAGGTGTTATTT
ATTAAGGTATTATACAATGATGTCTGACCCAGTATGTGCTTGTCCTCTTTAAGATTGGAATGTG
AGACATGTTGCTGTGACCTGTTTTATTTTTTGTTCTGTTTTGTTTTGTTTTTTTTCTGCCTCAT
TCCACATTTGTAGATATTGTGTGAACTACAGTATATAATGACAATAATTAAGAGGATATTATGT
GGCTGCCACATACATTTTGAGGTGGTAGAACTATATTAGCTTTATATCATGTTCGCATAGGTCA
TTAATGTTCATGATTTAAATACCATTAAACGTTATGCGATTAGCAATGAGAAAGAACCCCTCCT
TAAATCTGGGAGTTTCCCCACCGCTCTTCCCCAGATGCATTATGATTCTGGATGCCTGTCTATC
TCAAAACTCTTAACACATGCAGACCAATAAGTTCTGCATTCCTTTTAAATACCAGGTCGTGACA
GTTTGTTGTTGGTCAGATTCACTGTCTCATTCATATTTATTGTAATATATTTTTGTTTTGTAAA
TACGTTAAACAAAACAAAATGTCATTGTTTAAAATATTTGTAATGTATATTAAAAAGATAAAAA
ATA

hide sequence

RefSeq Acc Id:

XM_006238449 ⟹ XP_006238511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	121,246,130 - 121,398,763 (+)	NCBI
mRatBN7.2	5	116,130,382 - 116,283,436 (+)	NCBI
Rnor_6.0	5	120,339,874 - 120,492,503 (+)	NCBI
Rnor_5.0	5	124,210,621 - 124,370,661 (+)	NCBI

Sequence:

show sequence

TAAGTTAGATGTCATCACACTTGGCCACCTGGTCTTAAAATGGCACTTGTTAGTTACCTCATTG
TCACGTGCCATTTTTCCTTACAGCATTTGCTGCCACTTGTGGTTTCATATTGCTTGTCTGAATC
CTCTCACCTGAAGGTAAAAATTGCTATGAGGGCAGACTTGCCTGCTCCTATCCACTGGAACCCT
AACTGGTAGAACTAGGCCTGGCAAAAATGACCGTTGAATGAGTGACAGAGGAAGGGAGGGATGT
GCCTGTGTTATAGAATGATACAAAATTCCATGTGTAAAGAACGACTAAAAGGTTTGCTGCAAAC
TTCTTTGCCTTTCAGTAGAGGAGTCTACTGGTCTGGATTCCTCGTACCTGGTCCTGGCTGAGTC
ACTGACAGGCTGGTTTGCAAAGCTTCCTTGTTTATCTGCTTATATCTTGGGGAAGAAGCTTTAG
GCACCTGTGGTCTTGAAGCAGACATGGGCCACTCTAGGGCACCTACTGCCTCTGTGTGGTGCCA
CCCGAGAGCAGAGCTTGGGGGTCGTTCCTGTACACTACTCTGTCTGCAGGACGAAGAGCTGTGC
AGGACCCACCCACAGGTGTTTATTGAGTAAATGAAGCAGAGAGTGGGTACAAGGAGGAAGCTCA
GAGTTCGTTATCCCCTCCAAAGTCACTTGAAAATAAGTCTGGACCACAGCGCAGACCTTCCAGG
TTCAACGTGAACCAAGCCTCTCTGGAAGCAAGAAGAAACTAGGCAGTTGGATCTCCACTCCAAG
GAAGGAAGAAGGGCGAACCTAGGCTCCAGATCCGATTCCATGCCATGTTTTGGAAGTCGTGTTT
ACGTCTGCCTTCATCCTCATCCCTTCCGTTTCAGCATAAGCAAAATTATAACCCTGCACACTGA
CTCGTATGCCATTATCATAGCCTGGCTGCTCCTGCGTTGAGGGACTTCGCCCCCGGGATCGCTG
ACTGTCTGTGAATGACAAATCCAAAGTCAGGGGTTGCAGAGTCAGCCGGACTTGCCTGCTCTCG
TGCAGCAGCGGGAGGAAACAGAATGAAAGATTCTGAAAATAAAGTGTAAAGATCTTTCATCTCT
GTGATGGTGTCAACTTGGCTGAAGTGAGGATTACCCGGAGAACTGGTGCCTCATCTCCAGACAT
GGAGCCCAGCTATGGGGGAGGCCTTTTTGATATGGTGAAAGGTGGTGCAGGTAGGCTATTCAGT
AACCTGAAGGACAACTTGAAAGACACCCTCAAAGATACATCCTCCAGAGTCATCCAGTCTGTTA
GCAGCTACACAAAGGGAGACCTAGACTTTACTTATGTCACTTCCAGGATTATCGTGATGTCCTT
TCCTATGGACAGTGTTGACATAGGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGAT
TCCAGACATCTTGACCACTACACAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGT
TCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCCCCAAGTCTACACAACCTGTT
TGCTGTGTGTCGGAATATGTATAACTGGCTGCTGCAGAATCCCAAAAATGTCTGTGTTGTCCAC
TGCTTGGATGGACGGGCCGCATCATCAATTCTGGTTGGTGCTATGTTCATTTTCTGTAATCTCT
ACTCTACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAATTGGACTGTCTCC
GTCCCACAGGAGGTACTTAGGCTACATGTGTGACCTACTTGCAGATAAGCCCTACCGTCCTCAC
TTCAAGCCGCTCACAATCAAGGCAATCACTGTCAGCCCAATTCCCTTCTTCAATAAACAGAGGA
ATGGGTGCCGCCCTTACTGTGACGTACTGATTGGAGAAACTAAAATATTCTCAACATGCACAGA
CTTCGAACGAATGAAAGAATACCGTGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACA
GTCCAAGGTGACGTCATTGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGG
CTAAGGTGACCAACACACAGATATTCCAGCTCCAGTTTCATTCTGGATTTATACCACTGGACAC
AACAGTTTTAAAGTTCACCAAGCCTGAGTTGGATGCATGTGATGTACCAGAAAAATATCCTCAG
CTGTTCCAAGTGACACTGGATATAGAAGTACAGCCCCAAGACAAAGTGATCGACCTAACTCCAC
CATGGGAGCACTACTGCACAAAGGATGTGAACCCCAGCATCCTCTTCTCCTCTCAGCAGGAGCA
TCAGGATACTCTGGCCTTAGGGGGTCAGGCTCCAGCAGATCTCCCTCCAGACCATCCGAGGAAT
CTTGGGCAAGGAGGCTTCTTTGCCTCTCTGTGTTGGCAAGATCAGAAATCAGAGAAGTCACGGT
GTGAGGAGGACCACGCAGCCCTGGTGAATCAGGAAAGCGAGCAGTCGGATGATGAACTACTGAC
TCTCTCAAGCCCACATGGCAATGCTGATGGTGACAAGCCTCATGGAGCCAAGAAGCCTGGCAAA
AAGCAGCAGGAGCCAGCTGCGCCTCCTCCCCCAGAGGAGGTGGACCTTCTGGGCCTGGAAGGGT
CCGATGTGAGCACGAACTTCTCCCCCTTGGCAGCTCCTCCCAGCAATTCTGAACTGCTGAGTGA
CCTGTTTGGGGGTGGAGGTGCCACAGGTCCTGCCCAGGCAGGACAGGTTGGAGTCGAAGATGTG
TTTCACCCAAGTGGACCTGCGTCTGCGCAGTCCACACCACGCCGAGCCACCACTTCCGCCTCTG
CATCGCCAACCCTAAGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCC
ACCAGGTCAGGATTTGTTGGGCTCCTTCCTGAACACATCCAATGCTTCTAGCGACCCCTTTCTG
CAGCCCACGAGAAGCCCTTCCCCTACAGTGCATGCTTCTAGCACTCCTGCTGTGAACATCCAAC
CAGACATTGCTGGAGGTTGGGACTGGCATGCCAAACCAGGAGGTTTTGGGATGGGAAGCAAATC
GGCTGCCACCAGCCCAACAGGCTCAACACACGGCACCCCTACCCATCAGAGCAAGCCCCAGACT
CTGGATCCCTTCGCTGACTTGGGGACACTAGGCAGCTCTTCATTTGCCAGCAAACCCACCACAC
CAACTGGATTGGGTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCGTCCCCACAGCCCAT
GGGTGGAGGGTGGCAGCAGCCAGCCGGCTACAACTGGCAGCAGGCACAGCCTAAGCCACAGTCT
AGTATGCCTCACTCCTCCCCTCAGAACCGACCCAATTACAACGTGAGCTTCTCAGCTATGCCTG
CAGGGCAGAGCGACCGTGGAAAAGGATCTACTAACTTAGAAGGAAAACAGAAGGCTGCTGACTT
TGAAGATCTGCTTTCCAGTCAAGGCTTCAATGCCCACAAAGACAAAAAGGGGCCTCGAACAATA
GCTGAGATGAGAAAGGAGGAAATGGCTAAGGAAATGGATCCTGAGAAACTGAAGATCCTGGAGT
GGATAGAAGGCAAAGAGAGAAACATCAGAGCCCTGCTTTCCACAATGCACACTGTGCTGTGGGC
TGGGGAGACCAAGTGGAAACCTGTGGGCATGGCAGACCTGGTGACGCCAGAGCAAGTGAAGAAG
GTGTACAGGAGAGCCGTGCTAGTGGTGCACCCCGACAAGGCTACTGGGCAACCCTATGAACAAT
ATGCAAAGATGATCTTCATGGAGCTAAATGATGCCTGGTCCGAATTTGAAAACCAAGGCCAAAA
GCCCTTGTATTAATTTGTGAGCTTTTCTATGCTGGCTGCAGTCCTGTGATCATGCTTAGTGTGT
ACCACGGTTCTGAGATTTTCACAGATGAACCAAAAATTCTAGTAATGTATTTCCAGTACTAAAC
TGTTAAGTTCCTCGTGAATTCATTTCTCATGATAAGGAATGTGAACATTGGGTTTCTTGAAGTC
CGTAGCACCGAGAGGAACACTAGTGAACTGACCTTGCAGAGTCATGAAATCCCAGCCTGCCCTT
TGGGGAAGCCTATTCAGCATTTTGCCTGGGGAAATAGGACCGTGGCCACCCAAGGCGGAGGCCT
GACATCCATCTCACTGTCTGAGAGTAAGATTTATGAGTGGACATTATGGTAGTTGGATTACATA
ATGGTTTTAAGGAAATGATTTAGGGATTGTGTATGTGTGGTTTTTGTTTTTAAAGATGTAATTT
GAGCAATGGCTTTACACAAACTCCAAGAATATCACCAACCAAGTATTTTTTAATGGAAACTTAC
TGAAGCCTTTATAGCTTCTTCAGTTTGTGTCTTTTGGTCAAGAGCATTAACAATCATAGAAGTG
GCTAAATGGTGGGAGGTGGTTATGCAGAAATCTAGGCATTATCCTTAACTTTTCCTGGATGCAC
TAAGCCCAAGCACATGATAGCTGAAGAAACCAGGAGCCCTAAGATGTGTTGACTCCAGGTCAGA
ACTTTGGGGGTACTGGCTCCTTTCCCCTTTAAATTTGCAGTTGATTAAAGAAAAACCTTTAAAT
GCTACCACCACCATAATTCCAAACCTATTTGAAATCCCCCTTCTAATTGTTGCCACGAGGCTCA
GTGCTCTTTCTTTTGCTTAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGTAAAGCAGTTTG
GCTCATTCACATTCACACTTTGTGTAGACCTGGAGTTCTGGTGATTGCAAACCAGGGGGGAAAT
GGAGAAGATAACACTGAGTACTATTTAGAAAGGGTTTGGTTGGGGAGAGAGCTGTGGTGTGCCT
TCAGATCCAATTGGATAGCTTGCCAGTTTGAGGAGTCAGAGTCCCACCCACCCAGTGAATCTGG
GCCCCCACCCCTGGGATTATTTCCAATGGGTTTGCTGTTGGATGCATGTGAAAACTATGTAAGA
ATGCAACTTTCCCAGACCGACTGGTTGCAATTTAGTCCAGTGCTCAGAGCTTCCCATTGTGCAA
GGGAGGCAGCTGGTACTGCTGGGACTTTGCTAGGTCTCCTGGTGAGCACACGCGCAGCATCTAT
CTATCCATCCATATATGCATATGAGTATGTCTAGTGTGCACATACACATTCACAAAGCGGGTGG
TCAAAAAGATTATCATGCTGATCTTAAAAGGTTCACATTCAATATTGTGAAAAGCTTTCAAAAG
TTTGTTTTTCAAAGACAATCATTTTGTTGGGTTGTTTCTGTTTTAATATTCTTGTGACAAACTA
AACCGAAAAAGCAGCATGTCAGAAATAATTTTGGTTCCATATAGACCTCTCTTCTCTCTTTTCT
TTTAAATTATAAAAGTTCATTATTTATTTTGCCTTTTACTGATAATGTGAAATTCTCAAAAAAA
ATATTCTCTTTAAAATATGCAGTTGTAAACTCTTCAAAGTAACCATGACAACCTAGGTGTTATT
TATTAAGGTATTATACAATGATGTCTGACCCAGTATGTGCTTGTCCTCTTTAAGATTGGAATGT
GAGACATGTTGCTGTGACCTGTTTTATTTTTTGTTCTGTTTTGTTTTGTTTTTTTTCTGCCTCA
TTCCACATTTGTAGATATTGTGTGAACTACAGTATATAATGACAATAATTAAGAGGATATTATG
TGGCTGCCACATACATTTTGAGGTGGTAGAACTATATTAGCTTTATATCATGTTCGCATAGGTC
ATTAATGTTCATGATTTAAATACCATTAAACGTTATGCGATTAGCAATGAGAAAGAACCCCTCC
TTAAATCTGGGAGTTTCCCCACCGCTCTTCCCCAGATGCATTATGATTCTGGATGCCTGTCTAT
CTCAAAACTCTTAACACATGCAGACCAATAAGTTCTGCATTCCTTTTAAATACCAGGTCGTGAC
AGTTTGTTGTTGGTCAGATTCACTGTCTCATTCATATTTATTGTAATATATTTTTGTTTTGTAA
ATACGTTAAACAAAACAAAATGTCATTGTTTAAAATATTTGTAATGTATATTAAAAAGATAAAA
AATA

hide sequence

RefSeq Acc Id:

XM_039109918 ⟹ XP_038965846

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	121,235,652 - 121,398,763 (+)	NCBI
mRatBN7.2	5	116,120,328 - 116,283,436 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001402850	(Get FASTA)	NCBI Sequence Viewer
	XP_006238509	(Get FASTA)	NCBI Sequence Viewer
	XP_006238510	(Get FASTA)	NCBI Sequence Viewer
	XP_006238511	(Get FASTA)	NCBI Sequence Viewer
	XP_038965846	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL97830	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070257.1
	ENSRNOP00000070493
	ENSRNOP00000070493.1
	ENSRNOP00000084012
	ENSRNOP00000084012.2
	ENSRNOP00000086865.2
	ENSRNOP00000095523
	ENSRNOP00000095523.1
	ENSRNOP00000109452
	ENSRNOP00000109452.1

RefSeq Acc Id:	XP_006238509 ⟸ XM_006238447
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A6P4 (UniProtKB/TrEMBL), A0A8I5ZWX0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSAFRAERSASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKG DLDFTYVTSRIIVMSFPMDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVS ECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGP AVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPIPFFNKQRNGCRPY CDVLIGETKIFSTCTDFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHLRSTIGSRLQAKVTNT QIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDIEVQPQDKVIDLTPPWEHYC TKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQDQKSEKSRCEEDHA ALVNQESEQSDDELLTLSSPHGNADGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTN FSPLAAPPSNSELLSDLFGGGGATGPAQAGQVGVEDVFHPSGPASAQSTPRRATTSASASPTLR VGEGATFDPFGAPAKPPGQDLLGSFLNTSNASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGG WDWHAKPGGFGMGSKSAATSPTGSTHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGG GFPPLSSPQKASPQPMGGGWQQPAGYNWQQAQPKPQSSMPHSSPQNRPNYNVSFSAMPAGQSDR GKGSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKE RNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIF MELNDAWSEFENQGQKPLY hide sequence

RefSeq Acc Id:	XP_006238510 ⟸ XM_006238448
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JY26 (UniProtKB/TrEMBL), A6JRN8 (UniProtKB/TrEMBL), D4A0I5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNPKSGVAESAGLACSRAAAGGNRMKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKD NLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMSFPMDSVDIGFRNQVDDIRSFLDSRHL DHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDG RAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPL TIKAITVSPIPFFNKQRNGCRPYCDVLIGETKIFSTCTDFERMKEYRVQDGKIFIPLNITVQGD VIVSMYHLRSTIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQV TLDIEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNLGQG GFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNADGDKPHGAKKPGKKQQE PAAPPPPEEVDLLGLEGSDVSTNFSPLAAPPSNSELLSDLFGGGGATGPAQAGQVGVEDVFHPS GPASAQSTPRRATTSASASPTLRVGEGATFDPFGAPAKPPGQDLLGSFLNTSNASSDPFLQPTR SPSPTVHASSTPAVNIQPDIAGGWDWHAKPGGFGMGSKSAATSPTGSTHGTPTHQSKPQTLDPF ADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQPAGYNWQQAQPKPQSSMPH SSPQNRPNYNVSFSAMPAGQSDRGKGSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMR KEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRR AVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY hide sequence

RefSeq Acc Id:	XP_006238511 ⟸ XM_006238449
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZWX0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMS FPMDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNL FAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLS PSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPIPFFNKQRNGCRPYCDVLIGETKIFSTCT DFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHLRSTIGSRLQAKVTNTQIFQLQFHSGFIPLD TTVLKFTKPELDACDVPEKYPQLFQVTLDIEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQE HQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELL TLSSPHGNADGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTNFSPLAAPPSNSELLS DLFGGGGATGPAQAGQVGVEDVFHPSGPASAQSTPRRATTSASASPTLRVGEGATFDPFGAPAK PPGQDLLGSFLNTSNASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHAKPGGFGMGSK SAATSPTGSTHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQP MGGGWQQPAGYNWQQAQPKPQSSMPHSSPQNRPNYNVSFSAMPAGQSDRGKGSTNLEGKQKAAD FEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLW AGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ KPLY hide sequence

Ensembl Acc Id:

ENSRNOP00000070257 ⟸ ENSRNOT00000086539

Ensembl Acc Id:

ENSRNOP00000070493 ⟸ ENSRNOT00000086259

RefSeq Acc Id:	XP_038965846 ⟸ XM_039109918
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZWX0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095523 ⟸ ENSRNOT00000113921

Ensembl Acc Id:

ENSRNOP00000084012 ⟸ ENSRNOT00000116178

Ensembl Acc Id:

ENSRNOP00000086865 ⟸ ENSRNOT00000110252

RefSeq Acc Id:	NP_001402850 ⟸ NM_001415921
- UniProtKB:	A0A8I6AMT9 (UniProtKB/TrEMBL), A0A8I5ZWX0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109452 ⟸ ENSRNOT00000130808

Protein Domains

C2 tensin-type J Phosphatase tensin-type Tyrosine specific protein phosphatases

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JY26-F1-model_v2	AlphaFold	A0A0G2JY26	1-938	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693859

Promoter ID:

EPDNEW_R4384

Type:

single initiation site

Name:

Dnajc6_1

Description:

DnaJ heat shock protein family member C6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	120,340,763 - 120,340,823	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309900	AgrOrtholog
BioCyc Gene	G2FUF-40537	BioCyc
Ensembl Genes	ENSRNOG00000052887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086259	ENTREZGENE
	ENSRNOT00000086259.3	UniProtKB/TrEMBL
	ENSRNOT00000086539.3	UniProtKB/TrEMBL
	ENSRNOT00000110252.2	UniProtKB/TrEMBL
	ENSRNOT00000113921	ENTREZGENE
	ENSRNOT00000113921.2	UniProtKB/TrEMBL
	ENSRNOT00000116178	ENTREZGENE
	ENSRNOT00000116178.2	UniProtKB/TrEMBL
	ENSRNOT00000130808	ENTREZGENE
	ENSRNOT00000130808.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
	2.60.40.1110	UniProtKB/TrEMBL
	3.90.190.10	UniProtKB/TrEMBL
InterPro	C2_domain_sf	UniProtKB/TrEMBL
	DnaJ_dom_sf	UniProtKB/TrEMBL
	DnaJ_N	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	Tensin_lipid_phosphatase_dom	UniProtKB/TrEMBL
	Tensin_phosphatase_C2-dom	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_dom	UniProtKB/TrEMBL
NCBI Gene	313409	ENTREZGENE
PANTHER	AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED	UniProtKB/TrEMBL
	TYROSINE-PROTEIN PHOSPHATASE AUXILIN-RELATED	UniProtKB/TrEMBL
Pfam	PTEN_C2	UniProtKB/TrEMBL
PhenoGen	Dnajc6	PhenoGen
PROSITE	C2_TENSIN	UniProtKB/TrEMBL
	DNAJ_2	UniProtKB/TrEMBL
	PPASE_TENSIN	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000052887	RatGTEx
SMART	DnaJ	UniProtKB/TrEMBL
	PTEN_C2	UniProtKB/TrEMBL
Superfamily-SCOP	DnaJ_N	UniProtKB/TrEMBL
	SSF49562	UniProtKB/TrEMBL
	SSF52799	UniProtKB/TrEMBL
UniProt	A0A0G2JY26	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZWX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A6P4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMT9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0M496_RAT	UniProtKB/TrEMBL
	A6JRN8	ENTREZGENE, UniProtKB/TrEMBL
	D4A0I5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Dnajc6	DnaJ (Hsp40) homolog, subfamily C, member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Dnajc6	DnaJ (Hsp40) homolog, subfamily C, member 6	Dnajc6_predicted	DnaJ (Hsp40) homolog, subfamily C, member 6 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Dnajc6_predicted	DnaJ (Hsp40) homolog, subfamily C, member 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)