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Gene: Npas2 (neuronal PAS domain protein 2) Rattus norvegicus

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Symbol:

Npas2

Name:

neuronal PAS domain protein 2

RGD ID:

1309681

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; Hsp90 protein binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including positive regulation of behavioral fear response; regulation of macromolecule metabolic process; and response to redox state. Predicted to act upstream of or within circadian sleep/wake cycle and locomotor rhythm. Predicted to be located in nucleus. Predicted to be part of CLOCK-BMAL transcription complex. Orthologous to human NPAS2 (neuronal PAS domain protein 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC316351; neuronal PAS domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NPAS2 (neuronal PAS domain protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Npas2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Npas2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NPAS2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NPAS2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Npas2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NPAS2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NPAS2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Npas2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Npas2 (neuronal PAS domain protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRPM3 (transient receptor potential cation channel subfamily M member 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NPAS2 (neuronal PAS domain protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Npas2 (neuronal PAS domain protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	npas2 (neuronal PAS domain protein 2)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Clk	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Clk	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	npas2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	npas2	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	48,959,225 - 49,138,036 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	48,959,148 - 49,138,037 (+)	Ensembl				GRCr8
mRatBN7.2	9	41,463,361 - 41,642,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	41,463,830 - 41,642,320 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	49,959,731 - 50,138,286 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	55,082,477 - 55,261,036 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	53,364,568 - 53,543,046 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	45,901,262 - 46,081,880 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	45,901,741 - 46,081,880 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	45,590,021 - 45,769,792 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	38,255,362 - 38,434,352 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	39,213,508 - 39,392,002 (+)	NCBI		Celera
RGSC_v3.1	9	38,256,775 - 38,434,671 (+)	NCBI
Cytogenetic Map	9	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Chronobiology Disorders (ISO)

cocaine abuse (ISO)

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-methoxyethanol (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

Actein (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

avobenzone (ISO)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

Bisphenol A diglycidyl ether (ISO)

bisphenol AF (ISO)

bromobenzene (EXP)

brucine (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carmustine (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

cisplatin (EXP)

cobalt dichloride (EXP,ISO)

cocaine (EXP,ISO)

cocaine hydrochloride (ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP)

dibutyl phthalate (EXP)

dichloromethane (ISO)

dicrotophos (ISO)

digoxigenin (ISO)

dihydroouabain (ISO)

dioxygen (EXP)

doxorubicin (ISO)

ellagic acid (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

fluoxetine (ISO)

furan (EXP)

glafenine (EXP)

glyphosate (EXP)

indole-3-methanol (EXP)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methamphetamine (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

nevirapine (EXP)

nickel sulfate (ISO)

paraquat (EXP)

perfluorooctanoic acid (EXP)

permethrin (EXP)

phenobarbital (ISO)

phenytoin (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

quercetin (ISO)

resveratrol (EXP,ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

streptozocin (EXP)

strophanthidin (ISO)

styrene (ISO)

succimer (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (EXP)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

tributylstannane (ISO)

trichloroethene (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

vinclozolin (EXP)

WIN 55212-2 (EXP)

zinc atom (ISO)

zinc sulfate (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

circadian regulation of gene expression (IBA,IEA,ISO)

circadian rhythm (ISO)

circadian sleep/wake cycle (ISO)

DNA damage response (IEA,ISO)

DNA-templated transcription (IEA)

locomotor rhythm (ISO)

positive regulation of behavioral fear response (ISO)

positive regulation of DNA repair (ISO)

positive regulation of DNA-templated transcription (ISO)

regulation of circadian rhythm (ISO)

regulation of DNA-templated transcription (IEA)

regulation of gene expression (IEA)

regulation of transcription by RNA polymerase II (IBA,IEA)

response to redox state (ISO)

response to xenobiotic stimulus (ISO)

rhythmic process (IEA)

Cellular Component

CLOCK-BMAL transcription complex (IBA)

cytoplasm (IEA)

nucleus (IEA,ISO)

transcription regulator complex (IEA)

Molecular Function

DNA binding (IEA,ISO)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

Hsp90 protein binding (ISO)

protein binding (ISO)

protein dimerization activity (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Effect of fluoxetine and cocaine on the expression of clock genes in the mouse hippocampus and striatum.	Uz T, etal., Neuroscience. 2005;134(4):1309-16. doi: 10.1016/j.neuroscience.2005.05.003.

Additional References at PubMed

PMID:9079689	PMID:9576906	PMID:11441146	PMID:12477932	PMID:12843397	PMID:14645221	PMID:18316400	PMID:18819933	PMID:23831463	PMID:23864491	PMID:24048828	PMID:25212631
PMID:29163035	PMID:29355377

Genomics

Comparative Map Data

Npas2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	48,959,225 - 49,138,036 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	48,959,148 - 49,138,037 (+)	Ensembl				GRCr8
mRatBN7.2	9	41,463,361 - 41,642,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	41,463,830 - 41,642,320 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	49,959,731 - 50,138,286 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	55,082,477 - 55,261,036 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	53,364,568 - 53,543,046 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	45,901,262 - 46,081,880 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	45,901,741 - 46,081,880 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	45,590,021 - 45,769,792 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	38,255,362 - 38,434,352 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	39,213,508 - 39,392,002 (+)	NCBI		Celera
RGSC_v3.1	9	38,256,775 - 38,434,671 (+)	NCBI
Cytogenetic Map	9	q22	NCBI

NPAS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	100,818,723 - 100,996,829 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	100,820,091 - 100,996,829 (+)	Ensembl			hg38	GRCh38
GRCh37	2	101,436,601 - 101,613,291 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	100,803,045 - 100,979,719 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	100,895,130 - 101,071,805	NCBI
Celera	2	95,641,227 - 95,817,201 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	95,284,890 - 95,377,330 (+)	NCBI		HuRef
CHM1_1	2	101,440,965 - 101,617,609 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	101,278,833 - 101,455,526 (+)	NCBI		T2T-CHM13v2.0

Npas2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	39,233,013 - 39,402,321 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	39,232,812 - 39,402,317 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	39,193,702 - 39,363,240 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	39,193,731 - 39,363,236 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	39,251,117 - 39,420,085 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	39,138,745 - 39,306,732 (+)	NCBI		MGSCv36	mm8
Celera	1	38,989,171 - 39,157,180 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	17.98	NCBI

Npas2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	6,831,992 - 6,905,679 (+)	Ensembl
ChiLan1.0	NW_004955470	6,826,541 - 6,906,814 (+)	NCBI	ChiLan1.0	ChiLan1.0

NPAS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	27,229,065 - 27,405,686 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	27,231,826 - 27,408,436 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	2A	101,868,932 - 101,972,923 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	101,868,933 - 101,972,866 (+)	Ensembl			panPan2	panpan1.1

NPAS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	41,846,766 - 42,005,058 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	41,847,625 - 42,005,469 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	41,771,932 - 41,930,470 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	42,714,471 - 42,873,104 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	42,714,474 - 42,845,094 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	42,426,223 - 42,584,492 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	42,709,720 - 42,868,321 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	42,901,258 - 43,060,042 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Npas2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	86,320,820 - 86,473,227 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	95,752 - 210,097 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	96,312 - 176,395 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NPAS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	53,298,811 - 53,490,574 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	53,298,805 - 53,490,375 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	55,845,037 - 56,037,026 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NPAS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	4,529,048 - 4,705,167 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	4,612,225 - 4,705,419 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	172,148,777 - 172,325,348 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Npas2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	5,636,782 - 5,790,779 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	5,636,878 - 5,790,670 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Npas2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	115,418,747 - 115,604,312 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Npas2
1685 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	170
Count of miRNA genes:	117
Interacting mature miRNAs:	145
Transcripts:	ENSRNOT00000059571
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat

Markers in Region

RH142343

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	41,642,087 - 41,642,245 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	46,081,648 - 46,081,805	NCBI	Rnor6.0
Rnor_5.0	9	45,769,560 - 45,769,717	UniSTS	Rnor5.0
RGSC_v3.4	9	38,434,120 - 38,434,277	UniSTS	RGSC3.4
Celera	9	39,391,770 - 39,391,927	UniSTS
RH 3.4 Map	9	386.7	UniSTS
Cytogenetic Map	9	q21	UniSTS

BF392571

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	41,475,053 - 41,475,258 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	45,912,961 - 45,913,165	NCBI	Rnor6.0
Rnor_5.0	9	45,601,241 - 45,601,445	UniSTS	Rnor5.0
RGSC_v3.4	9	38,266,582 - 38,266,786	UniSTS	RGSC3.4
Celera	9	39,224,728 - 39,224,932	UniSTS
RH 3.4 Map	9	383.3	UniSTS
Cytogenetic Map	9	q21	UniSTS

BE119267

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	41,602,281 - 41,602,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	46,041,846 - 46,041,997	NCBI	Rnor6.0
Rnor_5.0	9	45,729,758 - 45,729,909	UniSTS	Rnor5.0
RGSC_v3.4	9	38,394,316 - 38,394,467	UniSTS	RGSC3.4
Celera	9	39,351,966 - 39,352,117	UniSTS
RH 3.4 Map	9	386.6	UniSTS
Cytogenetic Map	9	q21	UniSTS

Npas2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	41,641,544 - 41,641,814 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	46,081,105 - 46,081,374	NCBI	Rnor6.0
Rnor_5.0	9	45,769,017 - 45,769,286	UniSTS	Rnor5.0
RGSC_v3.4	9	38,433,577 - 38,433,846	UniSTS	RGSC3.4
Celera	9	39,391,227 - 39,391,496	UniSTS
Cytogenetic Map	9	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	157	91	90	59	77	59	6	340	176	11	136	81	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059571 ⟹ ENSRNOP00000056327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	48,959,471 - 49,137,893 (+)	Ensembl
mRatBN7.2 Ensembl	9	41,463,830 - 41,642,320 (+)	Ensembl
Rnor_6.0 Ensembl	9	45,901,741 - 46,081,880 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156354 ⟹ ENSRNOP00000099765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	48,959,148 - 49,138,037 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156568 ⟹ ENSRNOP00000104984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	48,959,148 - 49,138,037 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163798 ⟹ ENSRNOP00000108383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	49,035,951 - 49,138,037 (+)	Ensembl

RefSeq Acc Id:

NM_001108214 ⟹ NP_001101684

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,565 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,463,830 - 41,642,320 (+)	NCBI
Rnor_6.0	9	45,901,741 - 46,081,880 (+)	NCBI
Rnor_5.0	9	45,590,021 - 45,769,792 (+)	NCBI
RGSC_v3.4	9	38,255,362 - 38,434,352 (+)	RGD
Celera	9	39,213,508 - 39,392,002 (+)	RGD

Sequence:

show sequence

GCCGCCCCAGGCATCGGGTCCTGTCGACCGCTGCAGCCAGACCGACGGTGGGCTCCCGGAGCCA
CTCACCAAGGGAGAGGACTAGGCACCCCGAACCTCGGGATTCGGGGGTGCTCGGAGGGTGCTAG
ATGAGTGCTGCGTGCCCGGACAGAATCTTTGAAGATTGCCCGCAGCCCTTCCAGAGCTCCACCG
CATGCATCCTGAACCTTGGAAGCCTGGGACGCCTAGCGAGTGTGGTTGCCCGGCCGTGGCCCTG
GTGTCACTGCGTTCCTGGGTCTGACTTGGCTTAGGGCCGGATTGAAAGCCGGATCTTTGTGCTT
AGACAGCTCCTGGGACTCCCCGGGTTGGATGCTAGAGCACTGTTTTAGTGGGAGGTGTGCCCCC
TCCCCAAGTAGAGGAGGGGTGCACCCTTGACTTTTCTAAAAAGCGACTTAGGGTGGAAAGCAGA
GGGCAGGGACAGGTACCAAGAGGCTCAATTCAAAGCCAGCCTCTTCCCTCTGCCCGCCTCTCCT
TACTGCTTAAGCAGGCAAAACTGCATAGAAACTCTAATGGACGAAGATGAGAAGGATAGAGCAA
AGAGAGCCTCTCGAAACAAGTCTGAGAAGAAGCGTCGGGACCAGTTCAATGTTCTCATCAAAGA
GCTCAGCTCCATGCTCCCAGGCAACACTCGGAAACTGGACAAAACAACTGTGCTGGAGAAGGTC
ATCGGATTTCTGCAGAAACACAATGAAGTCTCAGCACAAACAGAAATCTGTGACATCCAGCAGG
ACTGGAAGCCTTCATTCCTCAGTAACGAAGAATTCACCCAGCTGATGTTGGAGGCGTTAGATGG
CTTCGTCATTGTTGTGACAACGGACGGCAGCATCATCTATGTGTCCGACAGCATCACGCCTCTC
CTCGGACATTTACCGTCGGATGTCATGGATCAGAACTTGTTAAATTTCCTTCCAGAACAAGAAC
ATTCCGAAGTTTATAAAATCCTTTCCTCCCATATGCTTGTGACGGATTCCCCCTCCCCAGAATT
CCTAAAATCTGACAACGATTTAGAGTTTTATTGTCATCTTCTGAGAGGCAGCTTGAACCCAAAG
GAATTTCCAACTTACGAATACATAAAATTTGTAGGAAATTTTCGCTCTTACAACAATGTGCCTA
GCCCCTCCTGTAATGGCTTTGACAACACCCTTTCAAGACCCTGCCGCGTGCCCCTGGGGAAGGA
GGTCTGCTTCATCGCCACGGTGCGCCTGGCAACACCACAGTTCTTAAAGGAAATGTGTGTAGCT
GACGAACCTTTAGAGGAATTCACTTCGAGGCATAGCTTGGAATGGAAATTTTTATTTCTGGATC
ACAGAGCCCCTCCAATCATAGGATACCTGCCCTTTGAAGTACTTGGCACGTCAGGCTATGACTA
CTACCACATTGATGACCTGGAGCTCCTGGCCAGGTGCCACCAGCACTTGATGCAGTTTGGCAAA
GGGAAGTCGTGTTGTTACCGGTTTCTAACCAAAGGACAGCAGTGGATTTGGTTGCAAACCCACT
ACTACATCACCTACCACCAGTGGAACTCCAAGCCCGAGTTCATCGTGTGCACACACTCGGTGGT
CAGTTACGCAGATGTCCGAGTGGAAAGGAGACAGGAGCTGGCTCTGGAAGATCCACCCACAGAA
GCCATGCACCCCTCTGCACTGAAGGAAAAGGACTCAAGCCTAGAGCCTCAGCCGCACTTTAATG
CACTTGACATGGGTGCCTCAGGTCTTACCAGCAGTCCTTCGCCATCAGCATCCTCGAGGAGTTC
CCACAAGTCCTCACACACAGCCATGTCAGAACCCACCTCCACTCCAACCAAGCTGATGGCTGAG
AACAGCACCACAGCTTTGCCAAGATCAGCCACCCTACCCCAGGAGTTACCAGTGCAGGGGCTCA
GCCAGGCAGCCACAATGCCAGCTCCTCTGCTTTCCTCATCATCCTGTGACCTTGCCAAGCAGCT
CCTGCCTCAGTCCCTGCCTCAGACGGTCCTGCAGAGTCCACCTGCTCCAGTGACACAGTTTTCA
GCACAATTTAGCATGTTCCAGACCATAAAAGACCAGTTGGAGCAGAGGACACGGATCCTGCAGG
CCAACATTCGGTGGCAGCAGGAAGAGCTTCACAAGATCCAGGAACAACTCTGCCTGGTCCAGGA
CTCCAACGTCCAGATGTTTCTACAGCAGCCAGCGGTGTCTCTGAGCTTCAGCGGTGCCCAGAGA
CCGGCAGCTCAGCAGCCACTGCAACAAAGGCCATCTGCACCGTCTCAGCCCCCGCTTGTGGTCA
ACACTCCACTGCCGGGGCAGATCACATCCACCCAAGTCACAAACCAGCACCTGCTCAGAGAATC
GAATGTGATGTCCGCCCAGGGTCCAAAACCAATAAGAAGCTCCCAGTTGCTGCCTGCCAGCAGC
CGTTCACTGAGCAGCCTGCCGTCCCAGTTCAGCAGCACAGCGTCCGTGCTCCCACCAGGCCTGA
GCCTCACCACTGTCGCTCCCACCCCTCAGGACACCAGCCAGTGCCAGCCCAGCCCTGACTTCGG
CCATGATCGGCAGCTCAGGCTGTTGCTGAGCCAACCCATCCAGCCTATGATGCCTGGGTCTTGT
GATGCCAGGCAGCCCTCAGAAGTCAGCAGGACTGGACGGCAAGTCAAATATGCACAGAGCCAAG
TGACGTTTCCAAGTCCTGACTCCCACCCCACCAGCAGCAGCGCCCCCACCCCGGTCCTGTTGAT
GGGGCAGGCCGTGCTCCATCCCGGCTTCCCCGCATCCCAGCCATCACCCCTGCAACCAACACAG
GTACAACAGCAGCCACCACCCTATCTACAGGCACCAACATCTCTGCACAGTGAACAGCCGGACT
CGCTCCTTCTCTCCACCTTCTCCCAGCAGCCAGCACCTCTGGGCTATGCAGCCACACAGCCTAC
ACAGCCGCAACCCCCACGCCCTTCCCGCAGGGTCAGCCGGCTGTCAGAGTCCTAAGGTCTCCAG
CAGCCATCCCGGTAGTGCCCTGACACTGGAGTCCAGAAGCAAACAGCTTTAACCAATGGAAAAC
GGGGTTGGCCGTGGGAGATGGGAAGAAGCGGTTGTGTGACTTTGGCGCACCCTGTGTACATTTC
AGAACTCCTGATGGTAACATGTCTGAAGTGTGGCACTTGCAGAATGGGGAAAGAACAGGATTAT
TGGCCATGATTTCCTTGCCCTGGGCTTCTCGGGCATCCGCTACAGCCATACAGACAGGAACTAA
GTGCCCTGTATGGGCACTGCTTCCTGGTCTATTTGCAGAGGTGGTACCTCTCGCTGCCTCCAGG
GGAGAGCGCTCCAAGTACTCTACCGACTGACACAGGTCCTAAGCCCTAGCGGGCCTTGACTCTC
TTGATGGTCTTTCCTTTACAGTCAAGGACTAAGTTAAAGGTCTTTGGAGAGAGTATAAAGAGAT
TATTTTTCATTATTTTTAAATGGTTGTTTTTTTTTTAATTTGCACACCTGTGCACAAGGGAAAT
AACAGGCACTTTCGGGGGTTTTTGTTTGTTCGTTCGTTTGTTTGTTTGTTTGTTTTAATAATAA
GGTCCCATGGCTTCATTGGGAATACACAATAATAGAAACAGTCCCACCAATCAGATAGCGAAGC
CTGTTATTAATGAAGCTACAGATCCACACCCTTGGCCTAAACCCTAGCGGACTGAGGCTCTCGG
GCACCAGGCCCTACAGGGGTGTTTTCCTTCCTAAATAGAACACTGGACTCTTCCTGTTAATTTC
GCTGATAGTAACTACAAAAGTGGATTCAGCAAAGCACAATCTCACAATGATTCCGAATTCCTGA
GAGACATCTTAGACTATGAGGGAAGAGGGCCCACAAGCAGGGGTACTCCGCAGGCCGAATCTCC
CAGGAAACCAGGCATGTGATGGCCTTCCTAGTGAGGTAGGCCACCATGACTTCCGGTATATCTT
CCCCGATGATTCCGAAGATCGGATTTTCCTTTTCAGAATGCACTTTGCTTTTTTTTTCTTTATG
TTTTGTTACATCGAGGTGTTTCTAAAGAGAAGATTTTATGTAATTATAAGAGGAAGTGTAGTGA
ATTGTACAGCTGTTGTAATAATGACCTATTTCTATAAAAAAATAAAATTGTATGGATTATGTGT
AAATTATTTTGTATCTGAGAGACCAGTTCCATTCACAAATATGAAAGTATAAAGGTTTCCTTGT
GTTTTTCTGTGAGTGAAACATTTTGTAATAAATTAACAAGTTTGTACAA

hide sequence

RefSeq Acc Id:

XM_008767031 ⟹ XP_008765253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,230 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,463,362 - 41,642,322 (+)	NCBI
Rnor_6.0	9	45,901,262 - 46,081,880 (+)	NCBI

Sequence:

show sequence

GCGGCAGCGGGGCGGGGAGGCGGCAGCGGTCCCCGGCTCTGCGCGCCCAAGAGTTTGCGGCGCG
AGCGGCGGGCTTTCCCGCAGGACCCGAGGGACCCGCGCAGCGTCCGCGGAGCCCCGAGACCCCG
GCGGCAGCGGCGAGAGCAGCGCCTCCCGCCGCCGCCCGGGAAAAGCTCCCTGAGCCCGCCTGCC
GCCCGGCTCCCCGCGGCGGCGGGAGGCGCGTCTCCCCGGCCCAGTCGGTGCCCGGCCTGGCGGG
GCCGCCCCGGCCCGCTCGGAGGCAAAACTGCATAGAAACTCTAATGGACGAAGATGAGAAGGAT
AGAGCAAAGAGAGCCTCTCGAAACAAGTCTGAGAAGAAGCGTCGGGACCAGTTCAATGTTCTCA
TCAAAGAGCTCAGCTCCATGCTCCCAGGCAACACTCGGAAACTGGACAAAACAACTGTGCTGGA
GAAGGTCATCGGATTTCTGCAGAAACACAATGAAGTCTCAGCACAAACAGAAATCTGTGACATC
CAGCAGGACTGGAAGCCTTCATTCCTCAGTAACGAAGAATTCACCCAGCTGATGTTGGAGGCGT
TAGATGGCTTCGTCATTGTTGTGACAACGGACGGCAGCATCATCTATGTGTCCGACAGCATCAC
GCCTCTCCTCGGACATTTACCGTCGGATGTCATGGATCAGAACTTGTTAAATTTCCTTCCAGAA
CAAGAACATTCCGAAGTTTATAAAATCCTTTCCTCCCATATGCTTGTGACGGATTCCCCCTCCC
CAGAATTCCTAAAATCTGACAACGATTTAGAGTTTTATTGTCATCTTCTGAGAGGCAGCTTGAA
CCCAAAGGAATTTCCAACTTACGAATACATAAAATTTGTAGGAAATTTTCGCTCTTACAACAAT
GTGCCTAGCCCCTCCTGTAATGGCTTTGACAACACCCTTTCAAGACCCTGCCGCGTGCCCCTGG
GGAAGGAGGTCTGCTTCATCGCCACGGTGCGCCTGGCAACACCACAGTTCTTAAAGGAAATGTG
TGTAGCTGACGAACCTTTAGAGGAATTCACTTCGAGGCATAGCTTGGAATGGAAATTTTTATTT
CTGGATCACAGAGCCCCTCCAATCATAGGATACCTGCCCTTTGAAGTACTTGGCACGTCAGGCT
ATGACTACTACCACATTGATGACCTGGAGCTCCTGGCCAGGTGCCACCAGCACTTGATGCAGTT
TGGCAAAGGGAAGTCGTGTTGTTACCGGTTTCTAACCAAAGGACAGCAGTGGATTTGGTTGCAA
ACCCACTACTACATCACCTACCACCAGTGGAACTCCAAGCCCGAGTTCATCGTGTGCACACACT
CGGTGGTCAGTTACGCAGATGTCCGAGTGGAAAGGAGACAGGAGCTGGCTCTGGAAGATCCACC
CACAGAAGCCATGCACCCCTCTGCACTGAAGGAAAAGGACTCAAGCCTAGAGCCTCAGCCGCAC
TTTAATGCACTTGACATGGGTGCCTCAGGTCTTACCAGCAGTCCTTCGCCATCAGCATCCTCGA
GGAGTTCCCACAAGTCCTCACACACAGCCATGTCAGAACCCACCTCCACTCCAACCAAGCTGAT
GGCTGAGAACAGCACCACAGCTTTGCCAAGATCAGCCACCCTACCCCAGGAGTTACCAGTGCAG
GGGCTCAGCCAGGCAGCCACAATGCCAGCTCCTCTGCTTTCCTCATCATCCTGTGACCTTGCCA
AGCAGCTCCTGCCTCAGTCCCTGCCTCAGACGGTCCTGCAGAGTCCACCTGCTCCAGTGACACA
GTTTTCAGCACAATTTAGCATGTTCCAGACCATAAAAGACCAGTTGGAGCAGAGGACACGGATC
CTGCAGGCCAACATTCGGTGGCAGCAGGAAGAGCTTCACAAGATCCAGGAACAACTCTGCCTGG
TCCAGGACTCCAACGTCCAGATGTTTCTACAGCAGCCAGCGGTGTCTCTGAGCTTCAGCGGTGC
CCAGAGACCGGCAGCTCAGCAGCCACTGCAACAAAGGCCATCTGCACCGTCTCAGCCCCCGCTT
GTGGTCAACACTCCACTGCCGGGGCAGATCACATCCACCCAAGTCACAAACCAGCACCTGCTCA
GAGAATCGAATGTGATGTCCGCCCAGGGTCCAAAACCAATAAGAAGCTCCCAGTTGCTGCCTGC
CAGCAGCCGTTCACTGAGCAGCCTGCCGTCCCAGTTCAGCAGCACAGCGTCCGTGCTCCCACCA
GGCCTGAGCCTCACCACTGTCGCTCCCACCCCTCAGGACACCAGCCAGTGCCAGCCCAGCCCTG
ACTTCGGCCATGATCGGCAGCTCAGGCTGTTGCTGAGCCAACCCATCCAGCCTATGATGCCTGG
GTCTTGTGATGCCAGGCAGCCCTCAGAAGTCAGCAGGACTGGACGGCAAGTCAAATATGCACAG
AGCCAAGTGACGTTTCCAAGTCCTGACTCCCACCCCACCAGCAGCAGCGCCCCCACCCCGGTCC
TGTTGATGGGGCAGGCCGTGCTCCATCCCGGCTTCCCCGCATCCCAGCCATCACCCCTGCAACC
AACACAGGTACAACAGCAGCCACCACCCTATCTACAGGCACCAACATCTCTGCACAGTGAACAG
CCGGACTCGCTCCTTCTCTCCACCTTCTCCCAGCAGCCAGCACCTCTGGGCTATGCAGCCACAC
AGCCTACACAGCCGCAACCCCCACGCCCTTCCCGCAGGGTCAGCCGGCTGTCAGAGTCCTAAGG
TCTCCAGCAGCCATCCCGGTAGTGCCCTGACACTGGAGTCCAGAAGCAAACAGCTTTAACCAAT
GGAAAACGGGGTTGGCCGTGGGAGATGGGAAGAAGCGGTTGTGTGACTTTGGCGCACCCTGTGT
ACATTTCAGAACTCCTGATGGTAACATGTCTGAAGTGTGGCACTTGCAGAATGGGGAAAGAACA
GGATTATTGGCCATGATTTCCTTGCCCTGGGCTTCTCGGGCATCCGCTACAGCCATACAGACAG
GAACTAAGTGCCCTGTATGGGCACTGCTTCCTGGTCTATTTGCAGAGGTGGTACCTCTCGCTGC
CTCCAGGGGAGAGCGCTCCAAGTACTCTACCGACTGACACAGGTCCTAAGCCCTAGCGGGCCTT
GACTCTCTTGATGGTCTTTCCTTTACAGTCAAGGACTAAGTTAAAGGTCTTTGGAGAGAGTATA
AAGAGATTATTTTTCATTATTTTTAAATGGTTGTTTTTTTTTTAATTTGCACACCTGTGCACAA
GGGAAATAACAGGCACTTTCGGGGGTTTTTGTTTGTTCGTTCGTTTGTTTGTTTGTTTGTTTTA
ATAATAAGGTCCCATGGCTTCATTGGGAATACACAATAATAGAAACAGTCCCACCAATCAGATA
GCGAAGCCTGTTATTAATGAAGCTACAGATCCACACCCTTGGCCTAAACCCTAGCGGACTGAGG
CTCTCGGGCACCAGGCCCTACAGGGGTGTTTTCCTTCCTAAATAGAACACTGGACTCTTCCTGT
TAATTTCGCTGATAGTAACTACAAAAGTGGATTCAGCAAAGCACAATCTCACAATGATTCCGAA
TTCCTGAGAGACATCTTAGACTATGAGGGAAGAGGGCCCACAAGCAGGGGTACTCCGCAGGCCG
AATCTCCCAGGAAACCAGGCATGTGATGGCCTTCCTAGTGAGGTAGGCCACCATGACTTCCGGT
ATATCTTCCCCGATGATTCCGAAGATCGGATTTTCCTTTTCAGAATGCACTTTGCTTTTTTTTT
CTTTATGTTTTGTTACATCGAGGTGTTTCTAAAGAGAAGATTTTATGTAATTATAAGAGGAAGT
GTAGTGAATTGTACAGCTGTTGTAATAATGACCTATTTCTATAAAAAAATAAAATTGTATGGAT
TATGTGTAAATTATTTTGTATCTGAGAGACCAGTTCCATTCACAAATATGAAAGTATAAAGGTT
TCCTTGTGTTTTTCTGTGAGTGAAACATTTTGTAATAAATTAACAAGTTTGTACAA

hide sequence

RefSeq Acc Id:

XM_039083582 ⟹ XP_038939510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,230 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,463,361 - 41,642,322 (+)	NCBI

RefSeq Acc Id:

XM_039083583 ⟹ XP_038939511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,684 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,463,729 - 41,642,322 (+)	NCBI

RefSeq Acc Id:

XM_039083584 ⟹ XP_038939512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,225 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,463,361 - 41,642,322 (+)	NCBI

RefSeq Acc Id:

XM_039083585 ⟹ XP_038939513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	49,015,758 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,519,572 - 41,642,322 (+)	NCBI

RefSeq Acc Id:

XM_039083586 ⟹ XP_038939514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,230 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,463,361 - 41,642,322 (+)	NCBI

RefSeq Acc Id:

XM_039083587 ⟹ XP_038939515

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	49,094,515 - 49,138,036 (+)	NCBI
mRatBN7.2	9	41,598,801 - 41,642,322 (+)	NCBI

RefSeq Acc Id:

XM_063267162 ⟹ XP_063123232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,225 - 49,138,036 (+)	NCBI

RefSeq Acc Id:

XR_010054596

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,230 - 49,134,742 (+)	NCBI

RefSeq Acc Id:

XR_010054597

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	48,959,230 - 49,134,742 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101684	(Get FASTA)	NCBI Sequence Viewer
	XP_008765253	(Get FASTA)	NCBI Sequence Viewer
	XP_038939510	(Get FASTA)	NCBI Sequence Viewer
	XP_038939511	(Get FASTA)	NCBI Sequence Viewer
	XP_038939512	(Get FASTA)	NCBI Sequence Viewer
	XP_038939513	(Get FASTA)	NCBI Sequence Viewer
	XP_038939514	(Get FASTA)	NCBI Sequence Viewer
	XP_038939515	(Get FASTA)	NCBI Sequence Viewer
	XP_063123232	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68989	(Get FASTA)	NCBI Sequence Viewer
	EDL99203	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056327
	ENSRNOP00000056327.3
	ENSRNOP00000099765
	ENSRNOP00000099765.1
	ENSRNOP00000104984
	ENSRNOP00000104984.1
	ENSRNOP00000108383.1

RefSeq Acc Id:

NP_001101684 ⟸ NM_001108214

- UniProtKB:

F1MAG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKLDKTTVLEKVIGFLQKHNEVSA
QTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHLPSDVMDQN
LLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPKEFPTYEYIKFVG
NFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKEMCVADEPLEEFTSRHS
LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKG
QQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPTEAMHPSALKEKDS
SLEPQPHFNALDMGASGLTSSPSPSASSRSSHKSSHTAMSEPTSTPTKLMAENSTTALPRSATL
PQELPVQGLSQAATMPAPLLSSSSCDLAKQLLPQSLPQTVLQSPPAPVTQFSAQFSMFQTIKDQ
LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSGAQRPAAQQPLQQRPS
APSQPPLVVNTPLPGQITSTQVTNQHLLRESNVMSAQGPKPIRSSQLLPASSRSLSSLPSQFSS
TASVLPPGLSLTTVAPTPQDTSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTG
RQVKYAQSQVTFPSPDSHPTSSSAPTPVLLMGQAVLHPGFPASQPSPLQPTQVQQQPPPYLQAP
TSLHSEQPDSLLLSTFSQQPAPLGYAATQPTQPQPPRPSRRVSRLSES

hide sequence

RefSeq Acc Id:	XP_008765253 ⟸ XM_008767031
- Peptide Label:	isoform X3
- UniProtKB:	F1MAG2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKLDKTTVLEKVIGFLQKHNEVSA QTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHLPSDVMDQN LLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPKEFPTYEYIKFVG NFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKEMCVADEPLEEFTSRHS LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKG QQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPTEAMHPSALKEKDS SLEPQPHFNALDMGASGLTSSPSPSASSRSSHKSSHTAMSEPTSTPTKLMAENSTTALPRSATL PQELPVQGLSQAATMPAPLLSSSSCDLAKQLLPQSLPQTVLQSPPAPVTQFSAQFSMFQTIKDQ LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSGAQRPAAQQPLQQRPS APSQPPLVVNTPLPGQITSTQVTNQHLLRESNVMSAQGPKPIRSSQLLPASSRSLSSLPSQFSS TASVLPPGLSLTTVAPTPQDTSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTG RQVKYAQSQVTFPSPDSHPTSSSAPTPVLLMGQAVLHPGFPASQPSPLQPTQVQQQPPPYLQAP TSLHSEQPDSLLLSTFSQQPAPLGYAATQPTQPQPPRPSRRVSRLSES hide sequence

Ensembl Acc Id:

ENSRNOP00000056327 ⟸ ENSRNOT00000059571

RefSeq Acc Id:	XP_038939512 ⟸ XM_039083584
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939510 ⟸ XM_039083582
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939514 ⟸ XM_039083586
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939511 ⟸ XM_039083583
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939513 ⟸ XM_039083585
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939515 ⟸ XM_039083587
- Peptide Label:	isoform X4
- UniProtKB:	B5DFA7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123232 ⟸ XM_063267162
- Peptide Label:	isoform X3
- UniProtKB:	F1MAG2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099765 ⟸ ENSRNOT00000156354

Ensembl Acc Id:

ENSRNOP00000104984 ⟸ ENSRNOT00000156568

Ensembl Acc Id:

ENSRNOP00000108383 ⟸ ENSRNOT00000163798

Protein Domains

PAS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1MAG2-F1-model_v2	AlphaFold	F1MAG2	1-816	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309681	AgrOrtholog
BioCyc Gene	G2FUF-27753	BioCyc
Ensembl Genes	ENSRNOG00000013408	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059571	ENTREZGENE
	ENSRNOT00000059571.4	UniProtKB/TrEMBL
	ENSRNOT00000156354	ENTREZGENE
	ENSRNOT00000156354.1	UniProtKB/TrEMBL
	ENSRNOT00000156568	ENTREZGENE
	ENSRNOT00000156568.1	UniProtKB/TrEMBL
	ENSRNOT00000163798.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
	PAS domain	UniProtKB/TrEMBL
InterPro	CLOCK-like	UniProtKB/TrEMBL
	HLH_DNA-bd	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	Nuc_translocat	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS-like_dom_sf	UniProtKB/TrEMBL
	PAS_fold	UniProtKB/TrEMBL
KEGG Report	rno:316351	UniProtKB/TrEMBL
NCBI Gene	316351	ENTREZGENE
PANTHER	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	UniProtKB/TrEMBL
	NEURONAL PAS DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS_11	UniProtKB/TrEMBL
PhenoGen	Npas2	PhenoGen
PRINTS	NCTRNSLOCATR	UniProtKB/TrEMBL
PROSITE	HLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013408	RatGTEx
SMART	HLH	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
Superfamily-SCOP	HLH_basic	UniProtKB/TrEMBL
	SSF55785	UniProtKB/TrEMBL
UniProt	A0ABK0L5H4_RAT	UniProtKB/TrEMBL
	A0ABK0LCJ7_RAT	UniProtKB/TrEMBL
	A0ABK0LTY6_RAT	UniProtKB/TrEMBL
	B5DFA7	ENTREZGENE, UniProtKB/TrEMBL
	F1MAG2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Npas2	neuronal PAS domain protein 2	Npas2_predicted	neuronal PAS domain protein 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Npas2_predicted	neuronal PAS domain protein 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD