Zfp142 (zinc finger protein 142) - Rat Genome Database

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Pathways
Gene: Zfp142 (zinc finger protein 142) Rattus norvegicus
Analyze
Symbol: Zfp142
Name: zinc finger protein 142
RGD ID: 1309648
Description: Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF142 (zinc finger protein 142); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC316524; zinc finger protein 142 (clone pHZ-49); Znf142
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,591,318 - 83,613,896 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl983,591,318 - 83,613,896 (-)EnsemblGRCr8
mRatBN7.2976,141,053 - 76,164,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,142,227 - 76,164,856 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx984,587,296 - 84,609,881 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,716,247 - 89,738,830 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,102,427 - 88,125,012 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,844,138 - 81,868,086 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,844,138 - 81,868,086 (-)Ensemblrn6Rnor6.0
Rnor_5.0981,608,286 - 81,630,468 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4973,904,901 - 73,938,845 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera973,715,361 - 73,737,373 (-)NCBICelera
RGSC_v3.1974,053,023 - 74,071,913 (-)NCBI
Cytogenetic Map9q33NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Zfp142
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,591,318 - 83,613,896 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl983,591,318 - 83,613,896 (-)EnsemblGRCr8
mRatBN7.2976,141,053 - 76,164,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,142,227 - 76,164,856 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx984,587,296 - 84,609,881 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,716,247 - 89,738,830 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,102,427 - 88,125,012 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,844,138 - 81,868,086 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,844,138 - 81,868,086 (-)Ensemblrn6Rnor6.0
Rnor_5.0981,608,286 - 81,630,468 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4973,904,901 - 73,938,845 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera973,715,361 - 73,737,373 (-)NCBICelera
RGSC_v3.1974,053,023 - 74,071,913 (-)NCBI
Cytogenetic Map9q33NCBI
ZNF142
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,633,329 - 218,659,623 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,633,329 - 218,659,655 (-)Ensemblhg38GRCh38
GRCh372219,498,052 - 219,524,346 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,210,883 - 219,232,599 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342219,328,143 - 219,349,860NCBI
Celera2213,270,397 - 213,292,019 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,356,096 - 211,377,844 (-)NCBIHuRef
CHM1_12219,509,613 - 219,531,330 (-)NCBICHM1_1
T2T-CHM13v2.02219,119,872 - 219,146,180 (-)NCBIT2T-CHM13v2.0
Zfp142
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,605,490 - 74,627,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,604,286 - 74,627,405 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38174,566,331 - 74,588,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,565,127 - 74,588,246 (-)Ensemblmm10GRCm38
MGSCv37174,611,702 - 74,634,602 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36174,611,702 - 74,634,602 (-)NCBIMGSCv36mm8
Celera175,122,820 - 75,145,715 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Znf142
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,766,762 - 14,786,403 (+)Ensembl
ChiLan1.0NW_00495545314,766,665 - 14,786,403 (+)NCBIChiLan1.0ChiLan1.0
ZNF142
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,268,930 - 121,290,330 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,279,111 - 121,305,296 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,894,127 - 105,917,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,489,913 - 224,512,205 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,492,064 - 224,509,839 (-)EnsemblpanPan2panpan1.1
ZNF142
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,244,783 - 25,262,585 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,245,643 - 25,260,296 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3726,064,682 - 26,082,605 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03725,260,775 - 25,278,698 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,261,256 - 25,278,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,165,576 - 25,183,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,099,829 - 25,117,752 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,120,449 - 25,138,366 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf142
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,742,261 - 174,761,723 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,086,017 - 1,101,640 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,084,981 - 1,103,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF142
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115120,688,836 - 120,707,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,670,003 - 133,679,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF142
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,541,268 - 104,563,625 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,541,698 - 104,560,696 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604094,840,499 - 94,863,117 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf142
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248236,397,211 - 6,417,671 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf142
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14148,006,777 - 148,028,192 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp142
119 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:96
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000067080
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)98216882386720295Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat

Markers in Region
BE099410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,151,586 - 76,151,740 (+)MAPPERmRatBN7.2
Rnor_6.0981,853,495 - 81,853,648NCBIRnor6.0
Rnor_5.0981,617,643 - 81,617,796UniSTSRnor5.0
RGSC_v3.4973,914,261 - 73,914,414UniSTSRGSC3.4
Celera973,724,720 - 73,724,873UniSTS
RH 3.4 Map9708.2UniSTS
Cytogenetic Map9q33UniSTS
RH143119  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,142,930 - 76,143,130 (+)MAPPERmRatBN7.2
Rnor_6.0981,844,842 - 81,845,041NCBIRnor6.0
Rnor_5.0981,608,990 - 81,609,189UniSTSRnor5.0
RGSC_v3.4973,905,605 - 73,905,804UniSTSRGSC3.4
Celera973,716,065 - 73,716,264UniSTS
RH 3.4 Map9709.59UniSTS
Cytogenetic Map9q33UniSTS
AI045490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,142,215 - 76,142,423 (+)MAPPERmRatBN7.2
Rnor_6.0981,844,127 - 81,844,334NCBIRnor6.0
Rnor_5.0981,608,275 - 81,608,482UniSTSRnor5.0
RGSC_v3.4973,904,890 - 73,905,097UniSTSRGSC3.4
Celera973,715,350 - 73,715,557UniSTS
RH 3.4 Map9709.9UniSTS
Cytogenetic Map9q33UniSTS
BE117672  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,150,519 - 76,150,684 (+)MAPPERmRatBN7.2
Rnor_6.0981,852,428 - 81,852,592NCBIRnor6.0
Rnor_5.0981,616,576 - 81,616,740UniSTSRnor5.0
RGSC_v3.4973,913,194 - 73,913,358UniSTSRGSC3.4
Celera973,723,653 - 73,723,817UniSTS
RH 3.4 Map9709.59UniSTS
Cytogenetic Map9q33UniSTS
D9Mco101  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,145,766 - 76,145,986 (+)MAPPERmRatBN7.2
Rnor_6.0981,847,677 - 81,847,894NCBIRnor6.0
Rnor_5.0981,611,825 - 81,612,042UniSTSRnor5.0
Celera973,718,901 - 73,719,119UniSTS
Cytogenetic Map9q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC100153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067080   ⟹   ENSRNOP00000063907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl983,591,318 - 83,613,896 (-)Ensembl
mRatBN7.2 Ensembl976,142,227 - 76,164,784 (-)Ensembl
Rnor_6.0 Ensembl981,844,138 - 81,868,086 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084964   ⟹   ENSRNOP00000069440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl983,591,318 - 83,611,595 (-)Ensembl
mRatBN7.2 Ensembl976,142,227 - 76,164,856 (-)Ensembl
Rnor_6.0 Ensembl981,845,080 - 81,864,202 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137794   ⟹   ENSRNOP00000107737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl983,591,318 - 83,611,430 (-)Ensembl
RefSeq Acc Id: NM_001108225   ⟹   NP_001101695
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,591,318 - 83,613,896 (-)NCBI
mRatBN7.2976,142,227 - 76,164,784 (-)NCBI
Rnor_6.0981,844,138 - 81,868,086 (-)NCBI
Rnor_5.0981,608,286 - 81,630,468 (-)NCBI
RGSC_v3.4973,904,901 - 73,938,845 (-)RGD
Celera973,715,361 - 73,737,373 (-)RGD
Sequence:
RefSeq Acc Id: XM_008767241   ⟹   XP_008765463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,591,989 - 83,606,614 (-)NCBI
mRatBN7.2976,141,053 - 76,157,520 (-)NCBI
Rnor_6.0981,844,809 - 81,861,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767242   ⟹   XP_008765464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,591,989 - 83,606,560 (-)NCBI
mRatBN7.2976,142,902 - 76,157,509 (-)NCBI
Rnor_6.0981,844,809 - 81,861,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083678   ⟹   XP_038939606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,591,989 - 83,611,396 (-)NCBI
mRatBN7.2976,141,053 - 76,164,779 (-)NCBI
RefSeq Acc Id: XM_063267227   ⟹   XP_063123297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,591,989 - 83,611,396 (-)NCBI
RefSeq Acc Id: XM_063267228   ⟹   XP_063123298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,591,989 - 83,600,078 (-)NCBI
RefSeq Acc Id: NP_001101695   ⟸   NM_001108225
- UniProtKB: D3ZU19 (UniProtKB/TrEMBL),   A6JVV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765464   ⟸   XM_008767242
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765463   ⟸   XM_008767241
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000063907   ⟸   ENSRNOT00000067080
Ensembl Acc Id: ENSRNOP00000069440   ⟸   ENSRNOT00000084964
RefSeq Acc Id: XP_038939606   ⟸   XM_039083678
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123297   ⟸   XM_063267227
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123298   ⟸   XM_063267228
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000107737   ⟸   ENSRNOT00000137794
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVD5-F1-model_v2 AlphaFold A0A0G2JVD5 1-1787 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309648 AgrOrtholog
BioCyc Gene G2FUF-27124 BioCyc
Ensembl Genes ENSRNOG00000022414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067080 ENTREZGENE
  ENSRNOT00000067080.4 UniProtKB/TrEMBL
  ENSRNOT00000084964 ENTREZGENE
  ENSRNOT00000084964.3 UniProtKB/TrEMBL
  ENSRNOT00000137794 ENTREZGENE
  ENSRNOT00000137794.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf-C2H2_CTCF UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:316524 UniProtKB/TrEMBL
NCBI Gene 316524 ENTREZGENE
PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN WECKLE UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_16 UniProtKB/TrEMBL
  zf-C2H2_ZN142 UniProtKB/TrEMBL
  zf-C2H2_ZNF142_18 UniProtKB/TrEMBL
PhenoGen Zfp142 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022414 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2JVD5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LUB1_RAT UniProtKB/TrEMBL
  A6JVV2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU19 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-19 Zfp142  zinc finger protein 142  Znf142  zinc finger protein 142  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-07 Znf142  zinc finger protein 142  Znf142  zinc finger protein 142 (clone pHZ-49)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Znf142  zinc finger protein 142 (clone pHZ-49)   Znf142_predicted  zinc finger protein 142 (clone pHZ-49) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Znf142_predicted  zinc finger protein 142 (clone pHZ-49) (predicted)      Symbol and Name status set to approved 70820 APPROVED