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Gene: Mdfic (MyoD family inhibitor domain containing) Rattus norvegicus

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Symbol:

Mdfic

Name:

MyoD family inhibitor domain containing

RGD ID:

1309532

Description:

Predicted to enable Tat protein binding activity and cyclin binding activity. Predicted to be involved in several processes, including negative regulation of protein import into nucleus; regulation of DNA-templated transcription; and regulation of signal transduction. Predicted to be active in cytoplasm and nucleolus. Human ortholog(s) of this gene implicated in hereditary lymphedema. Orthologous to human MDFIC (MyoD family inhibitor domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Kdt1; kidney cell line derived transcript 1; LOC362325; MyoD family inhibitor domain containing protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	44,938,301 - 45,018,157 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	44,938,480 - 45,018,156 (+)	Ensembl				GRCr8
mRatBN7.2	4	43,972,310 - 44,052,162 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	43,972,507 - 44,052,161 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	48,964,748 - 49,044,369 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	44,885,639 - 44,965,252 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	43,294,399 - 43,374,028 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	46,693,952 - 46,773,579 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	44,123,712 - 44,203,332 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	44,687,123 - 44,766,753 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	44,508,864 - 44,588,491 (+)	NCBI		F344_StmMcwi
Rnor_6.0	4	42,202,546 - 42,282,499 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	42,202,838 - 42,282,496 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	41,790,199 - 41,870,162 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	41,241,856 - 41,321,515 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	39,295,515 - 39,374,417 (+)	NCBI		Celera
RGSC_v3.1	4	41,357,957 - 41,436,075 (+)	NCBI
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

central conducting lymphatic anomaly (ISO,ISS)

genetic disease (ISO)

Lymphatic Malformation 12 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

choline (ISO)

cisplatin (ISO)

coumarin (ISO)

Cuprizon (EXP)

cyclophosphamide (ISO)

dibutyl phthalate (EXP)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

etoposide (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

geldanamycin (ISO)

glycidol (EXP)

L-methionine (ISO)

lead diacetate (EXP)

methapyrilene (EXP)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

nickel sulfate (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

paracetamol (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

raloxifene (ISO)

resveratrol (EXP)

SB 431542 (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IBA,IEA,ISO)

negative regulation of protein import into nucleus (IEA,ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of viral transcription (IEA,ISO)

regulation of gene expression (IEA)

regulation of JNK cascade (IBA,IEA,ISO)

regulation of Wnt signaling pathway (IBA,IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

nucleolus (IBA,IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

cyclin binding (IEA,ISO)

DNA-binding transcription factor binding (IEA,ISO)

protein binding (ISO)

Tat protein binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10671520	PMID:11139147	PMID:12192039	PMID:12944466	PMID:15207726	PMID:15465018	PMID:16260749	PMID:17891141

Genomics

Comparative Map Data

Mdfic
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	44,938,301 - 45,018,157 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	44,938,480 - 45,018,156 (+)	Ensembl				GRCr8
mRatBN7.2	4	43,972,310 - 44,052,162 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	43,972,507 - 44,052,161 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	48,964,748 - 49,044,369 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	44,885,639 - 44,965,252 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	43,294,399 - 43,374,028 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	46,693,952 - 46,773,579 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	44,123,712 - 44,203,332 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	44,687,123 - 44,766,753 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	44,508,864 - 44,588,491 (+)	NCBI		F344_StmMcwi
Rnor_6.0	4	42,202,546 - 42,282,499 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	42,202,838 - 42,282,496 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	41,790,199 - 41,870,162 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	41,241,856 - 41,321,515 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	39,295,515 - 39,374,417 (+)	NCBI		Celera
RGSC_v3.1	4	41,357,957 - 41,436,075 (+)	NCBI
Cytogenetic Map	4	q22	NCBI

MDFIC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	114,922,094 - 115,019,917 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	114,921,746 - 115,019,917 (+)	Ensembl			hg38	GRCh38
GRCh37	7	114,562,149 - 114,659,971 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	114,349,445 - 114,446,501 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	109,368,760 - 109,466,574 (+)	NCBI		Celera
Cytogenetic Map	7	q31.1-q31.2	NCBI
HuRef	7	108,926,620 - 109,024,416 (+)	NCBI		HuRef
CHM1_1	7	114,495,574 - 114,593,313 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	116,236,858 - 116,334,721 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	113,957,476 - 114,055,279 (+)	NCBI

Mdfic
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	15,720,660 - 15,802,168 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	15,720,660 - 15,802,168 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	15,720,566 - 15,802,169 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	15,720,661 - 15,802,169 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	15,670,661 - 15,752,169 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	15,670,712 - 15,752,165 (+)	NCBI		MGSCv36	mm8
Celera	6	15,809,642 - 15,891,229 (+)	NCBI		Celera
Cytogenetic Map	6	A1	NCBI
cM Map	6	6.85	NCBI

Mdfic
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	20,808,499 - 20,871,886 (+)	Ensembl
ChiLan1.0	NW_004955432	20,790,404 - 20,869,521 (+)	NCBI	ChiLan1.0	ChiLan1.0

MDFIC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	151,743,941 - 151,841,460 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	3,754,973 - 3,852,885 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	106,886,481 - 106,983,546 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	119,582,927 - 119,678,976 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	119,584,817 - 119,678,614 (+)	Ensembl			panPan2	panpan1.1

MDFIC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	54,063,832 - 54,153,346 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	54,063,769 - 54,166,197 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	53,271,050 - 53,562,174 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	53,914,522 - 54,206,593 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	53,980,365 - 54,204,708 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	53,945,388 - 54,236,360 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	53,631,893 - 53,923,655 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	54,005,559 - 54,296,821 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mdfic
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	42,765,012 - 42,852,780 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936589	3,838,064 - 3,925,029 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936589	3,838,064 - 3,925,029 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MDFIC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	31,027,056 - 31,125,465 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	31,026,048 - 31,125,664 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	33,266,209 - 33,454,034 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MDFIC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	83,624,021 - 83,721,584 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	83,625,299 - 83,718,507 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	20,049,168 - 20,140,654 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mdfic
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624827	4,499,287 - 4,585,771 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624827	4,499,655 - 4,586,301 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mdfic
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	123,156,954 - 123,235,516 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mdfic
746 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	287
Count of miRNA genes:	173
Interacting mature miRNAs:	215
Transcripts:	ENSRNOT00000042273
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	13080146	58080146	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	15644309	60644309	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	11038706	56038706	Rat
8655949	Rf62	Renal function QTL 62	22		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	4	35396600	45429897	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	11038706	56038706	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	11038706	56038706	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	18900697	63900697	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	1	45429897	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	11038706	56038706	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
2290374	Gluco32	Glucose level QTL 32	6.27		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	4	38144194	45429897	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	22288453	63245191	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	18900697	63900697	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	11038706	56038706	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5889999	50889999	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	18913151	63913151	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	27862204	62997402	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	11038706	56038706	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
11530004	Niddm71	Non-insulin dependent diabetes mellitus QTL 71		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	4	33538816	53719714	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
1354665	Stl10	Serum triglyceride level QTL 10	3.57		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	22288453	45429897	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat

Markers in Region

RH130457

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	44,051,774 - 44,051,957 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	42,282,110 - 42,282,292	NCBI	Rnor6.0
Rnor_5.0	4	41,869,773 - 41,869,955	UniSTS	Rnor5.0
RGSC_v3.4	4	41,321,128 - 41,321,310	UniSTS	RGSC3.4
Celera	4	39,374,030 - 39,374,212	UniSTS
RH 3.4 Map	4	278.62	UniSTS
Cytogenetic Map	4	q21	UniSTS

RH131048

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	44,049,939 - 44,050,128 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	42,280,275 - 42,280,463	NCBI	Rnor6.0
Rnor_5.0	4	41,867,938 - 41,868,126	UniSTS	Rnor5.0
RGSC_v3.4	4	41,319,293 - 41,319,481	UniSTS	RGSC3.4
Celera	4	39,372,195 - 39,372,383	UniSTS
RH 3.4 Map	4	277.0	UniSTS
Cytogenetic Map	4	q21	UniSTS

AU048386

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	43,972,048 - 43,972,220 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	42,202,380 - 42,202,551	NCBI	Rnor6.0
Rnor_5.0	4	41,790,037 - 41,790,208	UniSTS	Rnor5.0
RGSC_v3.4	4	41,241,398 - 41,241,569	UniSTS	RGSC3.4
Celera	4	39,295,057 - 39,295,228	UniSTS
Cytogenetic Map	4	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC097143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC136101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI029676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB325630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB785173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV106654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN932316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV725464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000082453 ⟹ ENSRNOP00000073480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	44,938,480 - 45,018,151 (+)	Ensembl
mRatBN7.2 Ensembl	4	43,972,507 - 44,052,161 (+)	Ensembl
Rnor_6.0 Ensembl	4	42,202,838 - 42,282,496 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109211 ⟹ ENSRNOP00000076900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	44,938,495 - 45,018,156 (+)	Ensembl
mRatBN7.2 Ensembl	4	43,972,507 - 44,050,555 (+)	Ensembl

RefSeq Acc Id:

NM_001105668 ⟹ NP_001099138

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	44,938,503 - 45,018,157 (+)	NCBI
mRatBN7.2	4	43,972,507 - 44,052,162 (+)	NCBI
Dahl_SR_JrHsd	4	46,693,952 - 46,773,579 (+)	NCBI
Lyon_Normotensive	4	44,123,712 - 44,203,332 (+)	NCBI
Lyon_Hypertensive	4	44,687,123 - 44,766,753 (+)	NCBI
F344_StmMcwi	4	44,508,864 - 44,588,491 (+)	NCBI
Rnor_6.0	4	42,202,838 - 42,282,497 (+)	NCBI
Rnor_5.0	4	41,790,199 - 41,870,162 (+)	NCBI
RGSC_v3.4	4	41,241,856 - 41,321,515 (+)	RGD
Celera	4	39,295,515 - 39,374,417 (+)	RGD

Sequence:

show sequence

GAGAAGTGTTTGAAGAGTGTAGGAGTGGCAGCCCGAGGGTGAAAGAGACGCACAAGTGGATCCT
AAAGTCCTTCCCGGAGAGGGACTGCCCGGAGGGAAGGGACAGAGTGCACGGAGTCAGAGCGGGC
GGCTGCCACCGTCGCCGCCACTCTGGGAGACCGCTGGACCTGGTCAGACTGACCGGACGTGATG
GGCCCGCGGCCCGAGCCTCGCTGACGGCCGGCGGTGGGAGGAAGGACTCGGAGCTGCCTGCAGG
GTTGGGGTGATGCAGAGAGGCAGGCAGTTTCCTGCACCCAGCACCTAAGTAGCCGGGGTCGGTG
CACCCCGCGGGGACGGCGCGGGCTCCGAGCGTGGCCCATGTCCGGCGCGGGTGAAGCCCTCCCT
CCAGGGCCCGTGGGGCAGCAGTGCCCAGCCGAGGCGGGCGGTGGCCGGCTGGGCTCCCCAGCCC
ACGAAGAGTGTAATGAAGACACTACCGAGAAAGAAAAAAGACAAACTACCAGTAGCCACACTAG
GTGTGGGCTGATTCGGGACCAGTCCATTTGGAGAAATCCTTCAGATGGCGAACTTGTCAGAACC
CAACCTGAGCGTCTGCCTCAACTGCAGACATCAGCACAGGAGCCCAGCAAGGAGGAAACCAGCA
AGATACAGAATGGTGGCCACACAACTATGAACAATGGGAATGGAATTCCTCACAGAGCCAAACA
TATGTCTATGGATAATCACAAAATGTCATCTCCTGTCTCTCAGAAAATGCATAGAAAAATTCAG
TCCAGCTTGTCTGTAAACAATGACGTCAATAAGAAGAGTAAAGTAAATGCTGTCTTTTCCCAAA
AATCAGCTTCCTCACCTGAAGACTGTTGTGTCCACTGTATCCTGGCATGCTTGTTCTGTGAATT
CCTGACCCTCTGCAACATTGTCCTGGGACAAGCTTCGTGTGGCGTCTGCACCTCCGAAGCCTGC
TGCTGCTGCTGTGGAGACGAGATGGGTGATGACTGTAGCTGCCCCTGTGACATGGACTGCAGCA
TCATGGATGCCTGTTGTGAATCCTCAGACTGTTTAGAGATCTGCATGGAATGCTGTGGCATCTG
CTTTCCTTCATAAAGATTTATCTCTTGTTTGTACTAAAACTGGAGACAACTTTACAGTATTTCT
TGTAGGGGAAAGGAAAGCACATGGTGAGATTTCCAGGAAGCAGCTCAGTATTTGCACTGTTTAA
CTCATTCCTCTTAGGTAATCTCTGAAATTCTTCCTCTTTCACCAGTCGTGTATGATTTAATATG
TGAAGTTCTAACCAACTAACTGGTTTTTGAAGCTTCTTCGTAGGGGAATAATAATCGGAAGACA
TTTTGACACACACAGCCTGAAATGTTAAATGTCTTCTTTTTGTTGACATGTCTGTTTTCCCTAA
CCGTTCTGAGCAGCTCTTTGTTCTAAATACGACATTGCTCAATATGTATTTAAACCAGATCACT
TTGTTGTTTATCTATTAAAGGTTAAAAGCAAACATTTTTTTTTTATTCTAAGTAAGCATGAACA
TGGGGCAGAACCTTAAACAGATGTGGGACTCTCCGTGCTGGTCTGCTCTGGGCTTTGCCCCTCT
CTTGTTCTGCCCAGAGCACACTGAGGAAGATGGTGTAGCTCTTGTCCAGAACAGCAGGAAGTAT
AACTGAGGAGGGCAGGATGGGAGGGGTTAAGGTTAACCAGGTTGCAAGGCATGCTGGTTTCAGG
ACTGTAAAGGCCATAGGAACAAACAGAAGTGAATAAAGGGTTACTGAGGAAAGCCTGGAGGAGG
AGGATGTGGCATTGTGGATGCCCTAGGAAGAGCTACTTAAATTTAGGAAAAAGTTGAAGGTGGA
GGGCCTGAACTGTCTGCGCTCTGTACAAGTGAAAAGAATTTGCCTTCATTGCACATTGAAGCAA
CACAGCTTTCTTAGAACTATAAAATCTGAACTAATGCAAACATGCACTTTCCTACACATAATTT
AAGTGTTATAAATTTTAATGAAAACATAATACCTTGTTAACATAACTATATTTTACCAAAAAAT
GTAGAACACTTTTTAACAACGTTTATTTAAATGAGCTTTTTTTTTTTAAGATTAAAAAGTCCCA
GTATTCATTGGGGTTTTTCCAAAGCTGGCTTATATTTGGAAAGACTCAGTTCTTTATCTTGTAG
GGTTGGTGTGTGTGTGTGGGGGGGGGCCTATTTATTTTCATTGGCTTGTAGTTCTAGCCTTGTT
GTATTTCATAAGTACGTAAGTTTTGGATCCACTACAGGAGGACTTCGGATGGCTATCACCATTA
GCAGATATTAGGATTCCAATGGTGTGTGAAATTATGCCAACAGGCAGGTTATAAAGATACTAAA
GTATGAAGAAGTGAATCTGCCATGAGACTAATGCTATAGTGACGGAGTGAGCTCATGTGGAAGG
GAGAGTTCGGTTTCTCTCACATCCTCACATGTGTCTTTTTTTTTTCTCTCTAGATTTGAAATTT
GGTTAAATTGACTAATTCCTCATAGGCTCTTGGGAGTATGTTTTTGTTAGTGGTCCTTTCTAGT
TCTGGATGAGTATTAGATTGTTAGAAATAGTGCGTTTTTAGGAAGCCTTTTGTCAGCCTAGAAC
TTTAGGAGACCTGAACATATTTTTTTTTTAATTCATGAAGAATGTCAATATCACCAGTGTCTTT
CCTTTGAAAGTTAGCCTAGCTCACAATTAAATTACTATTTTAAATATTCTTTGAAAAAGGAAAG
CAAGTGTGTCTCCTTTTCTAGTGCAATTTACACGTGCATATATTTTAAATACGATGCTAGTGGA
CAGCTGCCTTCTTCCTTTTCTTTGAAACAGAAGCTTTGATTCGCTAAGTCAAGTATAACGGCAA
CCTTAGTATTTCCATATACCCAATGTTAGCTTGTGCTTATATCGTAGGACGAAGAAGAGCCATC
TGTTTATGGATAAGCCTCCTAATGGTTGTTAAAATATTTGCCTCGTTATCCTGTAAAACTGTTT
AACCAAGAGGCTTGTCTGAAGCCTGAATATATCTTGCCATGATTTGCAATGAAAATGTTAGTGC
ATTAGAAATGTTTTTCTGTAACAGAGAGCATTAGTGAATACCAGAATTTAATTTCCATACTTGT
ACGTGTAGGACTTTTCTTCAGCTCTCTACTCCAGGCAAGCCGTTCCTTAAGGCATCTTGTATAA
TTCAAAAGAAAAATAGGCAAATGTGAAAACAGTTTTAGCATATTTCAGAATTTTGGTATGTAAA
GTGTTTTGTTGAATCTTATGGGCGTCAAGACTAATTGCGATAGTTTACACCTAGACATTCAGTC
TCATTTTAAATGTGGCATATTTTCAAACTGGATCCTGGCTATTTTAAAATTAAAAATATATACA
TGACTACTTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236102 ⟹ XP_006236164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	44,938,321 - 45,018,153 (+)	NCBI
mRatBN7.2	4	43,972,326 - 44,052,160 (+)	NCBI
Rnor_6.0	4	42,202,643 - 42,282,499 (+)	NCBI
Rnor_5.0	4	41,790,199 - 41,870,162 (+)	NCBI

Sequence:

show sequence

TCCCAAACCTTGGTGGGCCAGGGTGGAGAAGCCTGCTCCTGGCCTGTCCTCTCTGGCTGGCCTC
CTGACCCAGACAGTTCCCTCCTCAAGGGAGCACAGGGCCAAACCTAGGTCGCGCCGCCCCCAGC
CTCGGGGCTGTCTGCCAAGAGTTCGAGGCCACCCCAATCCGGATATGATGAAAGGGCGCCACAG
AGAGAGAAGTGTTTGAAGAGTGTAGGAGTGGCAGCCCGAGGGTGAAAGAGACGCACAAGTGGAT
CCTAAAGTCCTTCCCGGAGAGGGACTGCCCGGAGGGAAGGGACAGAGTGCACGGAGTCAGAGCG
GGCGGCTGCCACCGTCGCCGCCACTCTGGGAGACCGCTGGACCTGGTCAGACTGACCGGACGTG
ATGGGCCCGCGGCCCGAGCCTCGCTGACGGCCGGCGGTGGGAGGAAGGACTCGGAGCTGCCTGC
AGGGTTGGGGTGATGCAGAGAGGCAGGCAGTTTCCTGCACCCAGCACCTAAGTAGCCGGGGTCG
GTGCACCCCGCGGGGACGGCGCGGGCTCCGAGCGTGGCCCATGTCCGGCGCGGGTGAAGCCCTC
CCTCCAGGGCCCGTGGGGCAGCAGTGCCCAGCCGAGGCGGGCGGTGGCCGGCTGGGCTCCCCAG
CCCACGAGTGTAATGAAGACACTACCGAGAAAGAAAAAAGACAAACTACCAGTAGCCACACTAG
GTGTGGGCTGATTCGGGACCAGTCCATTTGGAGAAATCCTTCAGATGGCGAACTTGTCAGAACC
CAACCTGAGCGTCTGCCTCAACTGCAGACATCAGCACAGGAGCCCAGCAAGGAGGAAACCAGCA
AGATACAGAATGGTGGCCACACAACTATGAACAATGGGAATGGAATTCCTCACAGAGCCAAACA
TATGTCTATGGATAATCACAAAATGTCATCTCCTGTCTCTCAGAAAATGCATAGAAAAATTCAG
TCCAGCTTGTCTGTAAACAATGACGTCAATAAGAAGAGTAAAGTAAATGCTGTCTTTTCCCAAA
AATCAGCTTCCTCACCTGAAGACTGTTGTGTCCACTGTATCCTGGCATGCTTGTTCTGTGAATT
CCTGACCCTCTGCAACATTGTCCTGGGACAAGCTTCGTGTGGCGTCTGCACCTCCGAAGCCTGC
TGCTGCTGCTGTGGAGACGAGATGGGTGATGACTGTAGCTGCCCCTGTGACATGGACTGCAGCA
TCATGGATGCCTGTTGTGAATCCTCAGACTGTTTAGAGATCTGCATGGAATGCTGTGGCATCTG
CTTTCCTTCATAAAGATTTATCTCTTGTTTGTACTAAAACTGGAGACAACTTTACAGTATTTCT
TGTAGGGGAAAGGAAAGCACATGGTGAGATTTCCAGGAAGCAGCTCAGTATTTGCACTGTTTAA
CTCATTCCTCTTAGGTAATCTCTGAAATTCTTCCTCTTTCACCAGTCGTGTATGATTTAATATG
TGAAGTTCTAACCAACTAACTGGTTTTTGAAGCTTCTTCGTAGGGGAATAATAATCGGAAGACA
TTTTGACACACACAGCCTGAAATGTTAAATGTCTTCTTTTTGTTGACATGTCTGTTTTCCCTAA
CCGTTCTGAGCAGCTCTTTGTTCTAAATACGACATTGCTCAATATGTATTTAAACCAGATCACT
TTGTTGTTTATCTATTAAAGGTTAAAAGCAAACATTTTTTTTTTATTCTAAGTAAGCATGAACA
TGGGGCAGAACCTTAAACAGATGTGGGACTCTCCGTGCTGGTCTGCTCTGGGCTTTGCCCCTCT
CTTGTTCTGCCCAGAGCACACTGAGGAAGATGGTGTAGCTCTTGTCCAGAACAGCAGGAAGTAT
AACTGAGGAGGGCAGGATGGGAGGGGTTAAGGTTAACCAGGTTGCAAGGCATGCTGGTTTCAGG
ACTGTAAAGGCCATAGGAACAAACAGAAGTGAATAAAGGGTTACTGAGGAAAGCCTGGAGGAGG
AGGATGTGGCATTGTGGATGCCCTAGGAAGAGCTACTTAAATTTAGGAAAAAGTTGAAGGTGGA
GGGCCTGAACTGTCTGCGCTCTGTACAAGTGAAAAGAATTTGCCTTCATTGCACATTGAAGCAA
CACAGCTTTCTTAGAACTATAAAATCTGAACTAATGCAAACATGCACTTTCCTACACATAATTT
AAGTGTTATAAATTTTAATGAAAACATAATACCTTGTTAACATAACTATATTTTACCAAAAAAT
GTAGAACACTTTTTAACAACGTTTATTTAAATGAGCTTTTTTTTTTTAAGATTAAAAAGTCCCA
GTATTCATTGGGGTTTTTCCAAAGCTGGCTTATATTTGGAAAGACTCAGTTCTTTATCTTGTAG
GGTTGGTGTGTGTGTGTGGGGGGGGGCCTATTTATTTTCATTGGCTTGTAGTTCTAGCCTTGTT
GTATTTCATAAGTACGTAAGTTTTGGATCCACTACAGGAGGACTTCGGATGGCTATCACCATTA
GCAGATATTAGGATTCCAATGGTGTGTGAAATTATGCCAACAGGCAGGTTATAAAGATACTAAA
GTATGAAGAAGTGAATCTGCCATGAGACTAATGCTATAGTGACGGAGTGAGCTCATGTGGAAGG
GAGAGTTCGGTTTCTCTCACATCCTCACATGTGTCTTTTTTTTTTCTCTCTAGATTTGAAATTT
GGTTAAATTGACTAATTCCTCATAGGCTCTTGGGAGTATGTTTTTGTTAGTGGTCCTTTCTAGT
TCTGGATGAGTATTAGATTGTTAGAAATAGTGCGTTTTTAGGAAGCCTTTTGTCAGCCTAGAAC
TTTAGGAGACCTGAACATATTTTTTTTTTAATTCATGAAGAATGTCAATATCACCAGTGTCTTT
CCTTTGAAAGTTAGCCTAGCTCACAATTAAATTACTATTTTAAATATTCTTTGAAAAAGGAAAG
CAAGTGTGTCTCCTTTTCTAGTGCAATTTACACGTGCATATATTTTAAATACGATGCTAGTGGA
CAGCTGCCTTCTTCCTTTTCTTTGAAACAGAAGCTTTGATTCGCTAAGTCAAGTATAACGGCAA
CCTTAGTATTTCCATATACCCAATGTTAGCTTGTGCTTATATCGTAGGACGAAGAAGAGCCATC
TGTTTATGGATAAGCCTCCTAATGGTTGTTAAAATATTTGCCTCGTTATCCTGTAAAACTGTTT
AACCAAGAGGCTTGTCTGAAGCCTGAATATATCTTGCCATGATTTGCAATGAAAATGTTAGTGC
ATTAGAAATGTTTTTCTGTAACAGAGAGCATTAGTGAATACCAGAATTTAATTTCCATACTTGT
ACGTGTAGGACTTTTCTTCAGCTCTCTACTCCAGGCAAGCCGTTCCTTAAGGCATCTTGTATAA
TTCAAAAGAAAAATAGGCAAATGTGAAAACAGTTTTAGCATATTTCAGAATTTTGGTATGTAAA
GTGTTTTGTTGAATCTTATGGGCGTCAAGACTAATTGCGATAGTTTACACCTAGACATTCAGTC
TCATTTTAAATGTGGCATATTTTCAAACTGGATCCTGGCTATTTTAAAATTAAAAATATATACA
TGACTACTTATT

hide sequence

RefSeq Acc Id:

XM_006236103 ⟹ XP_006236165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	44,938,307 - 44,994,623 (+)	NCBI
mRatBN7.2	4	43,972,312 - 44,028,623 (+)	NCBI
Rnor_6.0	4	42,202,546 - 42,258,228 (+)	NCBI
Rnor_5.0	4	41,790,199 - 41,870,162 (+)	NCBI

Sequence:

show sequence

CAAGATTTAATAGTCCTTTGAAGGGCAGGATTGAAAGTGGTTTTGGGGGTGGGGGGTTCCCAGA
AAGGCTGGGAATTTCTGAGCTCCCTCCCTGTTTTCCCAAACCTTGGTGGGCCAGGGTGGAGAAG
CCTGCTCCTGGCCTGTCCTCTCTGGCTGGCCTCCTGACCCAGACAGTTCCCTCCTCAAGGGAGC
ACAGGGCCAAACCTAGGTCGCGCCGCCCCCAGCCTCGGGGCTGTCTGCCAAGAGTTCGAGGCCA
CCCCAATCCGGATATGATGAAAGGGCGCCACAGAGAGAGAAGTGTTTGAAGAGTGTAGGAGTGG
CAGCCCGAGGGTGAAAGAGACGCACAAGTGGATCCTAAAGTCCTTCCCGGAGAGGGACTGCCCG
GAGGGAAGGGACAGAGTGCACGGAGTCAGAGCGGGCGGCTGCCACCGTCGCCGCCACTCTGGGA
GACCGCTGGACCTGGTCAGACTGACCGGACGTGATGGGCCCGCGGCCCGAGCCTCGCTGACGGC
CGGCGGTGGGAGGAAGGACTCGGAGCTGCCTGCAGGGTTGGGGTGATGCAGAGAGGCAGGCAGT
TTCCTGCACCCAGCACCTAAGTAGCCGGGGTCGGTGCACCCCGCGGGGACGGCGCGGGCTCCGA
GCGTGGCCCATGTCCGGCGCGGGTGAAGCCCTCCCTCCAGGGCCCGTGGGGCAGCAGTGCCCAG
CCGAGGCGGGCGGTGGCCGGCTGGGCTCCCCAGCCCACGAAGAGTGTAATGAAGACACTACCGA
GAAAGAAAAAAGACAAACTACCAGTAGCCACACTAGGTGTGGGCTGATTCGGGACCAGTCCATT
TGGAGAAATCCTTCAGATGGCGAACTTGTCAGAACCCAACCTGAGCGTCTGCCTCAACTGCAGA
CATCAGCACAGGAGCCCAGCAAGGAGGAAACCAGCAAGATACAGAATGGTGGCCACACAACTAT
GAACAATGGGAATGGAATTCCTCACAGAGCCAAACATATGTCTATGGATAATCACAAAATGTCA
TCTCCTGTCTCTCAGAAAATGCATAGAAAAATTCAGTCCAGCTTGTCTGTAAACAATGACGTCA
ATAAGAAGAGTAAAGTAAATGCTGTCTTTTCCCAAAAATCAGCTTCCTCACCTGAAGCATGTAC
GATGGGCCTTCTGCATCCAGGGACAATTCCAGGAGAGCCAAACCATTCCTGCTGCAGCCCTGTC
CTTCTGGGAAAGCCTGAAGTTTTTCCACATTTTACCAAGTGGACTGTCCTGTGTCTGAAGTGAC
TTGGCTATAAAAAGGCACTCAAAGACTTAAAGACAAATCCGCCTTTTAAAATGATGTAATCAAG
ACACTGGAGAGGTGGCCCAGCAGTTAAGAGCATTGGCTGTTGTTCCATGTGACCCGGTTTCCGT
TCACAGCCCACAATTGTGTGGGCTCACCATTGTCTCTAATTCCAGTTCCTGAGAATTCAATGCC
TAGTTCTGGCTGCTGAGGATACCAGGCATAATTCAAGATCAGTTTGCTTTGCACAGTGAGATAT
GACCTCAAAGGATCAAGCTAACTAACCAAGCAAATGACTAAACAGTCTGAACTAAAGGCAATTT
ACCCAGCATTCCAACGTCACTTGAGTGTGAATGGCCATCCACCTGTGGTGGATACATGGAGTTT
CATTTCAGTGAGCATGTGTCTACTTAAATCCTTTCCTCTTGAGATTTTAGGAACAGCTATCACA
CCTGTACTCTGCAGTGGTTTTTCTCCCCTGAGAGATTGAATTCTCAAAACCAGTGAGTGGTTCT
GACTCTGTTGTGTTTACCATGGTACCTGTAATCTTAAAGTTTCCCAAGTATTCATGAGTGGCGT
GTTGATTTATTTCAAACTGTGGTGTCTCCTTCCTTGAAACTAATGTAGCTCATATATTCTTCTA
AAATGTTCCTTTTTATGGCAGAGAGGAAAAAATACTTATGTGGGAAGACAGCACATTTTACTTA
AAGGTTATTAAATTAGTAGATTTCTTCCTGTTTTGTATAATTAAATATTTTCATACATTCTTAA
ATTTTCTGATTGCATCACCCAGGTGGAGAGTTTTAAGACTAAATGTGTAAGATTCTTGACCTTT
GAAATAATTATAGTGTAATTTAGTATCATCTAATATTCAAATTGCCAAGGGTTTTCATTAGTCT
TGGAGACACTTTTCCTTTCATAGAGATGGTAAATGCTAATATGTTTTAGGTGTGCCAGTTATAG
CTATAGTTTTTGTAAAAAAAAATAGGTTTCAACAAAAATATTGTTAAAAAATTTCATTCTCTTT
AGGGATGTTTGGCAATTTATTTGCACTCCACACTTGATACTCAAGAGTCAGTATTTGTAGGAGG
AACACATTGGATTTCAGCATCTCACTGAAATCAGTGCTCGGAAAGACAATGGAAAGGACTGGTT
CTACAGCGATAGCTGGAGAAATCTCTGATAATCATACGGAGCTGTGGTAGTCTGATGTGTAGAA
TATTTATGGAACCCGTCTGTCTGGGTTTGCTTATTAGCTCTACCCTTTGCTTATTAGCTAAACC
CTTGTATTAGCTCTACTCATCTGAGGGTGAGTTAGTAGCCTGTTTCTGTTGTAGCATCTTATCA
GGAAAATGGGAATGGTATACGTACTGATGCCATAGGATTATTATAAGTATTCCGTGAGGTTGAG
CAACTTTGTGGTCATAATTGCTGATGTGTATGGGGTTGGTGGCAGAGAGATCCGCTTGCTGGAA
AGGGTGCTAGGTGGAGACTTAAAAGGTAAGGTAGAGTTAAGTTGGATGGTTGAAGGTAAGATCG
CTATACTGTTTAGAACTCAAACCCAGGGAATGTCTTTGTCCACAAGGACTCAGTTTCCCCACAT
CTGCTAATGTAAGAGGCTATCCCCCACCTACTGGCCCTTCTGATCTAAACATTTCCTCATTAAG
ACTCTCTTGTCAGGTGATTTTATACTGTGTCAAGCTAACCGTTTAAAGTAGCCGTCAGATAGGA
GGAGGCATTAGGAGGGTACAAGAAGCTTTATGAATTAGTATTTTCAGATTACTCAAGTGACTTG
ATCTGATGGATAAGCTGACATAGGGGAGATGATACTGAACAAATAGGAAGCGGTCATTCCACCG
GCAGCCGAGATGTCTGTTCTGAAGATGGATCCCCATTCTCTATGACTTGCTGAAGGACATCATT
GTGTCAGCTACATTAAATCGTGTTGTGTTTTCATTCCGTTGTTTGGAACCCCCTCTGGTTGCTC
TTGTATATGTCTAGGGAGCTTCTTACTTGGTGCCTGCACTGCAGTGTATGCAGTGTCTTTGTTC
TGACTCTCTTACAGCCCTTCTGCTCTTTTGTGGTGAACTGTTACTGTAAGTCAGATAGTAAGAG
GTTGGAGACACGGTGGATTTCAGAAGCTAAGAGGTTGCAGTTCAGTTCTCTGGACCTGTTGATG
GATTAAAGTCCAATCTTGATGGTCTTGTCTTCTGTCACCCTTTTTTTTTTACAAGGTTCTGTGA
GATTCTTACTCTGTGATCTTGT

hide sequence

RefSeq Acc Id:

XM_039107769 ⟹ XP_038963697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	44,938,314 - 45,012,326 (+)	NCBI
mRatBN7.2	4	43,972,320 - 44,049,749 (+)	NCBI

RefSeq Acc Id:

XM_039107770 ⟹ XP_038963698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	44,938,301 - 45,018,153 (+)	NCBI
mRatBN7.2	4	43,972,310 - 44,052,160 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099138	(Get FASTA)	NCBI Sequence Viewer
	XP_006236164	(Get FASTA)	NCBI Sequence Viewer
	XP_006236165	(Get FASTA)	NCBI Sequence Viewer
	XP_038963697	(Get FASTA)	NCBI Sequence Viewer
	XP_038963698	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM15098	(Get FASTA)	NCBI Sequence Viewer
	EDM15099	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073480
	ENSRNOP00000073480.1
	ENSRNOP00000076900
	ENSRNOP00000076900.1

RefSeq Acc Id:

NP_001099138 ⟸ NM_001105668

- UniProtKB:

D3ZVM7 (UniProtKB/TrEMBL), A6IE11 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGAGEALPPGPVGQQCPAEAGGGRLGSPAHEECNEDTTEKEKRQTTSSHTRCGLIRDQSIWRN
PSDGELVRTQPERLPQLQTSAQEPSKEETSKIQNGGHTTMNNGNGIPHRAKHMSMDNHKMSSPV
SQKMHRKIQSSLSVNNDVNKKSKVNAVFSQKSASSPEDCCVHCILACLFCEFLTLCNIVLGQAS
CGVCTSEACCCCCGDEMGDDCSCPCDMDCSIMDACCESSDCLEICMECCGICFPS

hide sequence

RefSeq Acc Id:

XP_006236165 ⟸ XM_006236103

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSGAGEALPPGPVGQQCPAEAGGGRLGSPAHEECNEDTTEKEKRQTTSSHTRCGLIRDQSIWRN
PSDGELVRTQPERLPQLQTSAQEPSKEETSKIQNGGHTTMNNGNGIPHRAKHMSMDNHKMSSPV
SQKMHRKIQSSLSVNNDVNKKSKVNAVFSQKSASSPEACTMGLLHPGTIPGEPNHSCCSPVLLG
KPEVFPHFTKWTVLCLK

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RefSeq Acc Id:

XP_006236164 ⟸ XM_006236102

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSGAGEALPPGPVGQQCPAEAGGGRLGSPAHECNEDTTEKEKRQTTSSHTRCGLIRDQSIWRNP
SDGELVRTQPERLPQLQTSAQEPSKEETSKIQNGGHTTMNNGNGIPHRAKHMSMDNHKMSSPVS
QKMHRKIQSSLSVNNDVNKKSKVNAVFSQKSASSPEDCCVHCILACLFCEFLTLCNIVLGQASC
GVCTSEACCCCCGDEMGDDCSCPCDMDCSIMDACCESSDCLEICMECCGICFPS

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Ensembl Acc Id:

ENSRNOP00000073480 ⟸ ENSRNOT00000082453

RefSeq Acc Id:	XP_038963698 ⟸ XM_039107770
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038963697 ⟸ XM_039107769
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5Y5P6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000076900 ⟸ ENSRNOT00000109211

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZVM7-F1-model_v2	AlphaFold	D3ZVM7	1-247	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692886

Promoter ID:

EPDNEW_R3411

Type:

initiation region

Name:

Mdfic_1

Description:

MyoD family inhibitor domain containing

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	42,202,831 - 42,202,891	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309532	AgrOrtholog
BioCyc Gene	G2FUF-45591	BioCyc
Ensembl Genes	ENSRNOG00000053787	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000082453	ENTREZGENE
	ENSRNOT00000082453.3	UniProtKB/TrEMBL
	ENSRNOT00000109211	ENTREZGENE
	ENSRNOT00000109211.2	UniProtKB/TrEMBL
InterPro	MDFI/MDFIC	UniProtKB/TrEMBL
KEGG Report	rno:362325	UniProtKB/TrEMBL
NCBI Gene	362325	ENTREZGENE
PANTHER	MYOD FAMILY INHIBITOR DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PTHR15304	UniProtKB/TrEMBL
Pfam	MDFI	UniProtKB/TrEMBL
PhenoGen	Mdfic	PhenoGen
RatGTEx	ENSRNOG00000053787	RatGTEx
UniProt	A0A8I5Y5P6	ENTREZGENE, UniProtKB/TrEMBL
	A6IE11	ENTREZGENE, UniProtKB/TrEMBL
	D3ZVM7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Mdfic	MyoD family inhibitor domain containing	Mdfic_predicted	MyoD family inhibitor domain containing (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Mdfic_predicted	MyoD family inhibitor domain containing (predicted)	Kdt1_predicted	kidney cell line derived transcript 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Kdt1_predicted	kidney cell line derived transcript 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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