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Gene: Cipc (CLOCK-interacting pacemaker) Rattus norvegicus

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Symbol:

Cipc

Name:

CLOCK-interacting pacemaker

RGD ID:

1309492

Description:

Predicted to be involved in negative regulation of DNA-templated transcription and negative regulation of circadian rhythm. Predicted to be active in nucleus. Orthologous to human CIPC (CLOCK interacting pacemaker); INTERACTS WITH bisphenol A; cadmium atom; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CLOCK-interacting protein, circadian; hypothetical protein LOC314330; LOC314330; RGD1309492; similar to mKIAA1737 protein; uncharacterized protein KIAA1737; uncharacterized protein LOC314330

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CIPC (CLOCK interacting pacemaker)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cipc (CLOCK interacting protein, circadian)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cipc (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CIPC (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CIPC (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cipc (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CIPC (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CIPC (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cipc (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cipc (CLOCK interacting pacemaker)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HRC (histidine rich calcium binding protein)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CIPC (CLOCK interacting pacemaker)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cipc (CLOCK interacting protein, circadian)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-132b12.7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	cipca (CLOCK-interacting pacemaker a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	cipcb (CLOCK-interacting pacemaker b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cipc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cipc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	112,325,980 - 112,344,692 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	112,325,671 - 112,344,692 (+)	Ensembl				GRCr8
mRatBN7.2	6	106,595,011 - 106,613,732 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	106,595,105 - 106,613,723 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	106,762,302 - 106,780,982 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	107,061,165 - 107,079,845 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	106,430,805 - 106,449,485 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	110,968,014 - 110,990,912 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	110,968,061 - 110,990,912 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	120,260,096 - 120,281,691 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	111,075,234 - 111,098,343 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	104,417,359 - 104,435,465 (+)	NCBI		Celera
RGSC_v3.1	6	111,079,282 - 111,099,306 (+)	NCBI
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

4,4'-sulfonyldiphenol (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

hydrogen peroxide (ISO)

paracetamol (EXP)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thiram (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of circadian rhythm (IEA,ISO)

negative regulation of DNA-templated transcription (IBA,IEA,ISO)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17310242	PMID:19414601

Genomics

Comparative Map Data

Cipc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	112,325,980 - 112,344,692 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	112,325,671 - 112,344,692 (+)	Ensembl				GRCr8
mRatBN7.2	6	106,595,011 - 106,613,732 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	106,595,105 - 106,613,723 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	106,762,302 - 106,780,982 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	107,061,165 - 107,079,845 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	106,430,805 - 106,449,485 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	110,968,014 - 110,990,912 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	110,968,061 - 110,990,912 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	120,260,096 - 120,281,691 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	111,075,234 - 111,098,343 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	104,417,359 - 104,435,465 (+)	NCBI		Celera
RGSC_v3.1	6	111,079,282 - 111,099,306 (+)	NCBI
Cytogenetic Map	6	q31	NCBI

CIPC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	77,098,258 - 77,117,287 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	77,098,126 - 77,117,287 (+)	Ensembl			hg38	GRCh38
GRCh37	14	77,564,601 - 77,583,630 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	76,634,331 - 76,653,383 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	76,634,330 - 76,653,382	NCBI
Celera	14	57,603,166 - 57,622,223 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	57,732,271 - 57,751,328 (+)	NCBI		HuRef
CHM1_1	14	77,502,995 - 77,522,047 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	71,308,042 - 71,327,053 (+)	NCBI		T2T-CHM13v2.0

Cipc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	86,993,817 - 87,012,138 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	86,993,817 - 87,012,136 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	86,944,741 - 86,965,364 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	86,947,043 - 86,965,362 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	88,287,993 - 88,306,314 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	87,836,514 - 87,852,908 (+)	NCBI		MGSCv36	mm8
Celera	12	88,410,550 - 88,429,016 (+)	NCBI		Celera
Cytogenetic Map	12	D2	NCBI
cM Map	12	41.13	NCBI

Cipc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	1,016,086 - 1,036,372 (+)	Ensembl
ChiLan1.0	NW_004955438	1,016,721 - 1,036,379 (+)	NCBI	ChiLan1.0	ChiLan1.0

CIPC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	78,179,707 - 78,201,740 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	77,396,221 - 77,418,244 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	57,652,018 - 57,671,107 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	76,854,392 - 76,873,509 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	76,854,661 - 76,873,509 (+)	Ensembl			panPan2	panpan1.1

CIPC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	49,926,494 - 49,947,006 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	49,926,978 - 49,945,326 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	49,614,515 - 49,635,023 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	50,160,377 - 50,180,724 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	50,160,774 - 50,180,704 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	49,823,175 - 49,843,510 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	49,846,309 - 49,866,794 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	50,244,557 - 50,264,886 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cipc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	26,114,722 - 26,193,993 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	5,938,170 - 5,953,812 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	5,938,328 - 5,954,246 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIPC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	100,180,970 - 100,197,837 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	100,180,389 - 100,199,529 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	106,212,583 - 106,229,525 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIPC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	54,341,807 - 54,360,949 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	54,349,341 - 54,357,937 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	42,543,210 - 42,562,437 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cipc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	24,766,660 - 24,782,103 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	24,767,952 - 24,787,781 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cipc
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	101,035,349 - 101,052,267 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cipc
106 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	316
Count of miRNA genes:	196
Interacting mature miRNAs:	249
Transcripts:	ENSRNOT00000014980
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat

Markers in Region

RH131365

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	106,613,430 - 106,613,616 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	110,990,611 - 110,990,796	NCBI	Rnor6.0
Rnor_5.0	6	120,281,390 - 120,281,575	UniSTS	Rnor5.0
RGSC_v3.4	6	111,098,052 - 111,098,237	UniSTS	RGSC3.4
Celera	6	104,435,164 - 104,435,349	UniSTS
RH 3.4 Map	6	730.79	UniSTS
Cytogenetic Map	6	q31	UniSTS

AI008479

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RGSC_v3.4	6	111,086,895 - 111,087,083	UniSTS	RGSC3.4
Celera	6	104,424,664 - 104,424,852	UniSTS
RH 3.4 Map	6	742.9	UniSTS
Cytogenetic Map	6	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014980 ⟹ ENSRNOP00000014980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	112,325,671 - 112,344,692 (+)	Ensembl
mRatBN7.2 Ensembl	6	106,595,129 - 106,613,723 (+)	Ensembl
Rnor_6.0 Ensembl	6	110,968,061 - 110,990,912 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100827 ⟹ ENSRNOP00000083776

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	112,332,129 - 112,344,692 (+)	Ensembl
mRatBN7.2 Ensembl	6	106,600,851 - 106,613,723 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114853 ⟹ ENSRNOP00000096737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	112,326,144 - 112,344,654 (+)	Ensembl
mRatBN7.2 Ensembl	6	106,595,189 - 106,613,723 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116697 ⟹ ENSRNOP00000087410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	112,325,924 - 112,344,691 (+)	Ensembl
mRatBN7.2 Ensembl	6	106,595,105 - 106,613,723 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118824 ⟹ ENSRNOP00000085137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	112,326,835 - 112,344,692 (+)	Ensembl
mRatBN7.2 Ensembl	6	106,595,932 - 106,613,723 (+)	Ensembl

RefSeq Acc Id:

NM_001108044 ⟹ NP_001101514

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,325,980 - 112,344,692 (+)	NCBI
mRatBN7.2	6	106,595,019 - 106,613,732 (+)	NCBI
Rnor_6.0	6	110,968,061 - 110,990,912 (+)	NCBI
Rnor_5.0	6	120,260,096 - 120,281,691 (+)	NCBI
RGSC_v3.4	6	111,075,234 - 111,098,343 (+)	RGD
Celera	6	104,417,359 - 104,435,465 (+)	NCBI

Sequence:

show sequence

CGAAAGCTGTCGTGGAGGCGGAGGGAGGAGAAATGGGCGGGAGGCCTTGGAGATAGCTAGAGAC
CCGGCGAATACCAGGTTGTCATGGAGTCATGGGGCCCATCTCGCGCATGCGCCAGCTAACCCGC
CGGGCTGGTCATGGAGCGGCGACCCTGGCCCTAGAGTAATCCATATGCAAAGACTACCTGTGAT
CCAGCTTCCAGCCCTCTTAGACATGGAGAGGAAAGTCCCATCGAGAGAGAGCCCCAGAAGACTC
TCTGCCAAGCCAGGCCGAGGCACGGAGATGAAAAAACTAGCCCGACCACTTGGTGTGGTGGCTG
CTGACTCAGACAAGGACTCCGGCTTTTCAGATGGGAGCTCAGAATGTCTGAGCTCTGCCGAGCA
GATGGAGTCAGAGGACGTGGTGAGCGCCCTGGGCTGGAGCAGAGAGGACAAGCTGAGGCAGAAC
GCCAGAGCGGCAAACCACGCCTTCCCCACACTGTCCCCTATGGTTGTCATGAAGAACGTGCTGG
TCAAGCAGGGCAGCAGCTCATCCCAGCTCCAGTCCTGGACTGTCCAGCCCTCCTTTGAAGTGAT
CTCAGCGCAGCCACAGCTCTTTGTCCTTCATCCACCTGTGCCATCTCCTGTCAGCCCATGCCAC
ACTGGTGAGAAAAAGTCAGAGTCCAGAAACTACTTGCCCATTCTAAATTCTTATACCAAAATAG
CCCCGCACCCAGGCAAAAGGGGCCTCAGCTCCGAAGAAAGAGGAACAAGTGGGGCACCGAAGAA
AATCTGCGTGGAGAGACTGGGGCCAAGCCTGTCTTCCAGTGAGCCAGCCAAGCCTGGCCGTGTG
CTATCCAGTCCTTTCACTCCAGCCCTACCCAGCTCCAAGCTCACCGAGGACTCGGCTCTGCAAG
GAGTGCCCTCCCTTGGGGCTGGCGGAAGCCCACAGACTCTTCAGCCTGTGTCCAGCAGTCATGT
AGCCAAAGCCCCCAGTCTGACCTTTGCTTCGCCCGCCAGTCCTGTATGTGCATCAGACAGCACT
CTGCATGGCTTAGAGAGCAGCTCCCCTCTCTCCCCACTGTCAGCCAGTTACAGTTCACCTCTGT
GGGCTGCGGAGCACCTCTGCCGCAGCCCAGACATCTTCCCTGAGCAGAGGCAGAACAAGCATAG
GCGCTTTCAGAATACCCTAGCCGTCCTCCGGAAGTCTGGTTTGCTGGGAATCACTCTGAAAGCC
AAGGAGTTGATTCGTCAGAACCAAGCAACTCAGGTGGAACTGGACCAGCTGAAGGAGCAAACCC
AGATGTTTATAGAGGCCACCAAGAGCAGGGCTCCTCAGGCGTGGGCCAAGTTGCAGGCGTCACT
CACATCTGGGTCCAGTCATTCAGGCAGTGACCTAGACACATTGTCTGACCCCCCAGACATATAG
CACAGAAGCATTTCCAGTTGTTTGAGTTAACTCCTTTGCGTTCACAACTACACTTGTTTTCCAC
AGCCTATTTAAGAGCTTTTCTTTCTAAAGTCACCCACAAAGCCACGTGCCAGTCCCTGGCTGCT
GTCTTAATCTGTGGCCCATGCACAGGTTAAGTGTGTTAAGTTCGTGAGGACCTCCAGCTGGAAG
TGTCTGTGAGTCCCTTTCCCTTAGCCTGCACGCGCTTAGCTGGTCCTTGGGACAAGGGAGAGAC
GGCTGTGTCTCTTCTAGCTGTTACTTCCCATCCTCCTCCTCACTGTCCAGGACCATGGTGCAGT
GACATGGATGAGTGCACACAGTGACACTTGTCCAACAGCCAAGGAGTAGGTGACCTAAGGATCC
CTTCACTGTCCTCCTTCAAGTATGTTAGTCATGGAGAAAAAGAAGAGGATGTGTTTTCATTTTA
CCAGGTGTGGTCTGTTGAGTGAAACCTAGAATGCTTTGGGCCAGGTGCCTGGGGGCAAGCATTT
ACCACATGAGGCTTTGTTCCTTACACTTGAAAGGTAAGGGAGAAAGGGCAAAGCCATCTGACTC
ACACCGATCACACACTGATCTCACTTATACCAGTAGGCAAATACTTCAGATTTTTAAAATATAG
AATGGATTTAATACTGTCTGGAATTGTATTTGATGAATTGCTTTTTTGATTTAAGGGTCAAAGA
AGGCAGCATTTTGGTCACTAGCTGGAAGGTTTTAGTAATTTATGCTGGAAATAGCACAACCCAT
CAGAGGCTTGAGATGGGCCTGTAGGATGGCTCCGTGAGTAAAGGTGCTTACTGCCAATGACCTG
AGTCTGACCCCTGAACCCCATGATAGACCGAGGGAACCTACTACTGTACATGCACATACACCAT
GATAAATGGATATAAAATTAAAAATAGAAGTCAACGTCAAAACAAGGTAAAACAATCACAAGCT
TGAGATGGCTTCAGTGGGTCCTCGGGGTCTAGTGTAAGTCCACCCTCAGCTGTCTCTTGTCTGT
ACCTCACCCAGCTGTGTCTGAGGGAAAAATGATCATGCTTATAAATTTAAGTTAAGTAAACCCC
AGGCCACAGCAACCAGAAAACATCCATTTTCACATCTGGGTTCTCACTCATGCCCTGTCATGAT
GGGGACACTGTGGAACAGTCTTGCACCTTTGTTTGATGTGGGCAGCAGGGCTGAAGTGTGATGT
CCCTCTCTGAGGCTGGTCTTAGGGTGGAGAGCTTAAGGAGATCCCATTGTCTTCAGCTTCCCTG
TGTCTAAGTGGTAAAGATCCCAAGGCTTGTATCCTGCCTGTTAAAATTTTCATCCTCCTGGAAA
TCTTTGTTCTTTACAAATTAACTTGGGTTTTATGACCAGCCTCATCTTTTTCTGCAGAGAGTGT
GCTCTTGGGGCTTTACTAGGTCCAGTTAAGGTTCACATTTATTACATAGCTGGTTGTAATTCTA
ACATAGTTTAAAAAGTATAAGACTCAGGTTGGCTCCACTGTGCTCATAAAGATATATGATTTAG
ATGCGACTGGTTTAAAAATGATCAACTTGGTAAAATCTCTGTTCTTTGGTCAACATAGAATTAT
TACTTGCTGTTTGCTTTCTGAAAGTTTCTAAAATCAGAGTCAGTGTTTCTGGGTAGGCTCGACT
CCTTCCCTTGATTCCGTGGTATTGTGTTCTGCACTCCACTGGGAAGCATCCTTCCTGGCAGAAT
GTTTGGCAGGAAGGCTGCAGAGACAGGAGCATTCAGAGCAGCCTGCACCAGCTGTGCCTTACTG
TGTGTCAGAAGGCTGGGAGCACTTGCTGGGAGCCAAGTATACTACTGCACTGGAAAAGCCCTCT
GTGGTGCTGTAAGTCATGGGACTCTCTTCCCACATTCGGGTTTCATTTCCTGTCCTGTCCCCAT
AAGAGATGATGAGAGCCACCGTGGATCCTCACTGCTGAGTGGTGGGAGGGTTGGCCCCGTCACT
GCTCCTCTGTGATCCTAGAGGCACAGCTGCACATCTCTAGGCTGCTAGCATAGTGCTCTGTTCC
TGGAGCAGCTGGAAGCAGACAGACTCCAGTAGAGAATCCTTTGAGGCCCGAGAGCAGACCAGCA
CTTAGAGAAAGTCTGGAGTGGACCAGAAGAATCTTCATTGGTTGCCCAAGGCTGTGAGTAGCAA
TGGCCTTAGTGCATGCTATGAGCTCTTCTGAAGCATTATGTAGGGCCGTTGTTTTCTCAAGGTG
AGGAGTCAATTTTAACTCAGACCAGCCCACAGGAGAACCCTTGTCAGTTGTATTGGCAATATCG
GACACAGTTAGAAAGGTTCCCGACTGAAATTGGTTATAGAATGCACTGTCATTTGTAATGTACT
ACACTGTTTTTATTGATTATGGTACTGTCTGACCTATCTTTTCTGGTATGACTCCTTCAGCAGA
CACATTGCTTCTGCCCATATACTGAAGCGACTCCTTAGGGTAGAGACTACCAAATGTGAGTTCT
TCTAAGAAAGTGTGAAGTCATGTAGAAATTGACTGTGAAATGTCAAAAAAAAAAAAAATAAAAG
TCATGTACTTGAAAGCTA

hide sequence

RefSeq Acc Id:

XM_006240377 ⟹ XP_006240439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,326,105 - 112,344,692 (+)	NCBI
mRatBN7.2	6	106,595,011 - 106,613,732 (+)	NCBI
Rnor_6.0	6	110,968,229 - 110,990,912 (+)	NCBI
Rnor_5.0	6	120,260,096 - 120,281,691 (+)	NCBI

Sequence:

show sequence

AAGGCAGGGTTCGCTAGGCTCCGGGCACAGGGAGAGCTGCGATGGGGGTGAGACTGAGAGGTTG
GGACTGGGAGCACCGAGAAAGCAGAGTAATCCATATGCAAAGACTACCTGTGATCCAGCTTCCA
GCCCTCTTAGACATGGAGAGGAAAGTCCCATCGAGAGAGAGCCCCAGAAGACTCTCTGCCAAGC
CAGGCCGAGGCACGGAGATGAAAAAACTAGCCCGACCACTTGGTGTGGTGGCTGCTGACTCAGA
CAAGGACTCCGGCTTTTCAGATGGGAGCTCAGAATGTCTGAGCTCTGCCGAGCAGATGGAGTCA
GAGGACGTGGTGAGCGCCCTGGGCTGGAGCAGAGAGGACAAGCTGAGGCAGAACGCCAGAGCGG
CAAACCACGCCTTCCCCACACTGTCCCCTATGGTTGTCATGAAGAACGTGCTGGTCAAGCAGGG
CAGCAGCTCATCCCAGCTCCAGTCCTGGACTGTCCAGCCCTCCTTTGAAGTGATCTCAGCGCAG
CCACAGCTCTTTGTCCTTCATCCACCTGTGCCATCTCCTGTCAGCCCATGCCACACTGGTGAGA
AAAAGTCAGAGTCCAGAAACTACTTGCCCATTCTAAATTCTTATACCAAAATAGCCCCGCACCC
AGGCAAAAGGGGCCTCAGCTCCGAAGAAAGAGGAACAAGTGGGGCACCGAAGAAAATCTGCGTG
GAGAGACTGGGGCCAAGCCTGTCTTCCAGTGAGCCAGCCAAGCCTGGCCGTGTGCTATCCAGTC
CTTTCACTCCAGCCCTACCCAGCTCCAAGCTCACCGAGGACTCGGCTCTGCAAGGAGTGCCCTC
CCTTGGGGCTGGCGGAAGCCCACAGACTCTTCAGCCTGTGTCCAGCAGTCATGTAGCCAAAGCC
CCCAGTCTGACCTTTGCTTCGCCCGCCAGTCCTGTATGTGCATCAGACAGCACTCTGCATGGCT
TAGAGAGCAGCTCCCCTCTCTCCCCACTGTCAGCCAGTTACAGTTCACCTCTGTGGGCTGCGGA
GCACCTCTGCCGCAGCCCAGACATCTTCCCTGAGCAGAGGCAGAACAAGCATAGGCGCTTTCAG
AATACCCTAGCCGTCCTCCGGAAGTCTGGTTTGCTGGGAATCACTCTGAAAGCCAAGGAGTTGA
TTCGTCAGAACCAAGCAACTCAGGTGGAACTGGACCAGCTGAAGGAGCAAACCCAGATGTTTAT
AGAGGCCACCAAGAGCAGGGCTCCTCAGGCGTGGGCCAAGTTGCAGGCGTCACTCACATCTGGG
TCCAGTCATTCAGGCAGTGACCTAGACACATTGTCTGACCCCCCAGACATATAGCACAGAAGCA
TTTCCAGTTGTTTGAGTTAACTCCTTTGCGTTCACAACTACACTTGTTTTCCACAGCCTATTTA
AGAGCTTTTCTTTCTAAAGTCACCCACAAAGCCACGTGCCAGTCCCTGGCTGCTGTCTTAATCT
GTGGCCCATGCACAGGTTAAGTGTGTTAAGTTCGTGAGGACCTCCAGCTGGAAGTGTCTGTGAG
TCCCTTTCCCTTAGCCTGCACGCGCTTAGCTGGTCCTTGGGACAAGGGAGAGACGGCTGTGTCT
CTTCTAGCTGTTACTTCCCATCCTCCTCCTCACTGTCCAGGACCATGGTGCAGTGACATGGATG
AGTGCACACAGTGACACTTGTCCAACAGCCAAGGAGTAGGTGACCTAAGGATCCCTTCACTGTC
CTCCTTCAAGTATGTTAGTCATGGAGAAAAAGAAGAGGATGTGTTTTCATTTTACCAGGTGTGG
TCTGTTGAGTGAAACCTAGAATGCTTTGGGCCAGGTGCCTGGGGGCAAGCATTTACCACATGAG
GCTTTGTTCCTTACACTTGAAAGGTAAGGGAGAAAGGGCAAAGCCATCTGACTCACACCGATCA
CACACTGATCTCACTTATACCAGTAGGCAAATACTTCAGATTTTTAAAATATAGAATGGATTTA
ATACTGTCTGGAATTGTATTTGATGAATTGCTTTTTTGATTTAAGGGTCAAAGAAGGCAGCATT
TTGGTCACTAGCTGGAAGGTTTTAGTAATTTATGCTGGAAATAGCACAACCCATCAGAGGCTTG
AGATGGGCCTGTAGGATGGCTCCGTGAGTAAAGGTGCTTACTGCCAATGACCTGAGTCTGACCC
CTGAACCCCATGATAGACCGAGGGAACCTACTACTGTACATGCACATACACCATGATAAATGGA
TATAAAATTAAAAATAGAAGTCAACGTCAAAACAAGGTAAAACAATCACAAGCTTGAGATGGCT
TCAGTGGGTCCTCGGGGTCTAGTGTAAGTCCACCCTCAGCTGTCTCTTGTCTGTACCTCACCCA
GCTGTGTCTGAGGGAAAAATGATCATGCTTATAAATTTAAGTTAAGTAAACCCCAGGCCACAGC
AACCAGAAAACATCCATTTTCACATCTGGGTTCTCACTCATGCCCTGTCATGATGGGGACACTG
TGGAACAGTCTTGCACCTTTGTTTGATGTGGGCAGCAGGGCTGAAGTGTGATGTCCCTCTCTGA
GGCTGGTCTTAGGGTGGAGAGCTTAAGGAGATCCCATTGTCTTCAGCTTCCCTGTGTCTAAGTG
GTAAAGATCCCAAGGCTTGTATCCTGCCTGTTAAAATTTTCATCCTCCTGGAAATCTTTGTTCT
TTACAAATTAACTTGGGTTTTATGACCAGCCTCATCTTTTTCTGCAGAGAGTGTGCTCTTGGGG
CTTTACTAGGTCCAGTTAAGGTTCACATTTATTACATAGCTGGTTGTAATTCTAACATAGTTTA
AAAAGTATAAGACTCAGGTTGGCTCCACTGTGCTCATAAAGATATATGATTTAGATGCGACTGG
TTTAAAAATGATCAACTTGGTAAAATCTCTGTTCTTTGGTCAACATAGAATTATTACTTGCTGT
TTGCTTTCTGAAAGTTTCTAAAATCAGAGTCAGTGTTTCTGGGTAGGCTCGACTCCTTCCCTTG
ATTCCGTGGTATTGTGTTCTGCACTCCACTGGGAAGCATCCTTCCTGGCAGAATGTTTGGCAGG
AAGGCTGCAGAGACAGGAGCATTCAGAGCAGCCTGCACCAGCTGTGCCTTACTGTGTGTCAGAA
GGCTGGGAGCACTTGCTGGGAGCCAAGTATACTACTGCACTGGAAAAGCCCTCTGTGGTGCTGT
AAGTCATGGGACTCTCTTCCCACATTCGGGTTTCATTTCCTGTCCTGTCCCCATAAGAGATGAT
GAGAGCCACCGTGGATCCTCACTGCTGAGTGGTGGGAGGGTTGGCCCCGTCACTGCTCCTCTGT
GATCCTAGAGGCACAGCTGCACATCTCTAGGCTGCTAGCATAGTGCTCTGTTCCTGGAGCAGCT
GGAAGCAGACAGACTCCAGTAGAGAATCCTTTGAGGCCCGAGAGCAGACCAGCACTTAGAGAAA
GTCTGGAGTGGACCAGAAGAATCTTCATTGGTTGCCCAAGGCTGTGAGTAGCAATGGCCTTAGT
GCATGCTATGAGCTCTTCTGAAGCATTATGTAGGGCCGTTGTTTTCTCAAGGTGAGGAGTCAAT
TTTAACTCAGACCAGCCCACAGGAGAACCCTTGTCAGTTGTATTGGCAATATCGGACACAGTTA
GAAAGGTTCCCGACTGAAATTGGTTATAGAATGCACTGTCATTTGTAATGTACTACACTGTTTT
TATTGATTATGGTACTGTCTGACCTATCTTTTCTGGTATGACTCCTTCAGCAGACACATTGCTT
CTGCCCATATACTGAAGCGACTCCTTAGGGTAGAGACTACCAAATGTGAGTTCTTCTAAGAAAG
TGTGAAGTCATGTAGAAATTGACTGTGAAATGTCAAAAAAAAAAAAAATAAAAGTCATGTACTT
GAAAGCTA

hide sequence

RefSeq Acc Id:

XM_006240378 ⟹ XP_006240440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,326,140 - 112,344,692 (+)	NCBI
mRatBN7.2	6	106,595,315 - 106,613,732 (+)	NCBI
Rnor_6.0	6	110,968,336 - 110,990,912 (+)	NCBI
Rnor_5.0	6	120,260,096 - 120,281,691 (+)	NCBI

Sequence:

show sequence

GAAAGAGAGCGAAGTGGGCCCGTGGGGGAACCAGGGATTTTTGGGGACGGGGGCCCCAAAAATT
GGGAGCAGAGGGACGCACCATTCCTGGCTTCCTTTTAGTTGGTTTGCGATGAGGGTCAGACCCG
GCGTGGGAAAGGGAATCTGGGGTGAGGCACAGACGGTGTGTAGGGACAGGGTTTGCGTGAGGGG
CAAGTGGTGTGAGTCCCATAGAGCATGTGTGCCTTGGCCTGGTCTTGGATACCATTGCTCTCGC
TAGGGGCGAACCTGAAGGCCTGAGGGGTCTATGAATGGGCTAGTGGGTGGGCATGAGGGCTGCT
TCCCGAGCGAGTGTCCAGGACCTTCGTCTAGGAGCTATGCCTCAGACACAGGTGCACTGTCTAT
TTCAGAGGCCTGCGGTCTCCTACTTTTCCTGGTTATTTCTCCTGGGTGGTCGACTCGCCAGGCA
TGGTGCCAAGGATAGGGACATGAGGAAGAAGGTGGCTTGTGCCAAGAAAGAAGTCAGTGGTTAG
TGGGTAGGCAGGACAGTTTTGATCTGGACCCAGAGCCAGAGCCCATCTCTCTGGGTATTGCCCA
AGTTCTGGGCATTTGCCCTGGATACTGGTGGTATGCCAGTCGCAGCATAGTCCTGGGGTCTGCC
CAGTTCTGCCCTGCTGAGTTGGCAGGAGGGTGCGCATGCTGCCTGGCACAGATGTCCTGTGGGC
TGGTGAGAATGAATAGGTGGGCACTGTTACTGCGAGCCCCCTTTCTGAAGCGATCTGAGAACGT
TCTCTAATCACATGGCCCCCTTCGAAAGAGTAATCCATATGCAAAGACTACCTGTGATCCAGCT
TCCAGCCCTCTTAGACATGGAGAGGAAAGTCCCATCGAGAGAGAGCCCCAGAAGACTCTCTGCC
AAGCCAGGCCGAGGCACGGAGATGAAAAAACTAGCCCGACCACTTGGTGTGGTGGCTGCTGACT
CAGACAAGGACTCCGGCTTTTCAGATGGGAGCTCAGAATGTCTGAGCTCTGCCGAGCAGATGGA
GTCAGAGGACGTGGTGAGCGCCCTGGGCTGGAGCAGAGAGGACAAGCTGAGGCAGAACGCCAGA
GCGGCAAACCACGCCTTCCCCACACTGTCCCCTATGGTTGTCATGAAGAACGTGCTGGTCAAGC
AGGGCAGCAGCTCATCCCAGCTCCAGTCCTGGACTGTCCAGCCCTCCTTTGAAGTGATCTCAGC
GCAGCCACAGCTCTTTGTCCTTCATCCACCTGTGCCATCTCCTGTCAGCCCATGCCACACTGGT
GAGAAAAAGTCAGAGTCCAGAAACTACTTGCCCATTCTAAATTCTTATACCAAAATAGCCCCGC
ACCCAGGCAAAAGGGGCCTCAGCTCCGAAGAAAGAGGAACAAGTGGGGCACCGAAGAAAATCTG
CGTGGAGAGACTGGGGCCAAGCCTGTCTTCCAGTGAGCCAGCCAAGCCTGGCCGTGTGCTATCC
AGTCCTTTCACTCCAGCCCTACCCAGCTCCAAGCTCACCGAGGACTCGGCTCTGCAAGGAGTGC
CCTCCCTTGGGGCTGGCGGAAGCCCACAGACTCTTCAGCCTGTGTCCAGCAGTCATGTAGCCAA
AGCCCCCAGTCTGACCTTTGCTTCGCCCGCCAGTCCTGTATGTGCATCAGACAGCACTCTGCAT
GGCTTAGAGAGCAGCTCCCCTCTCTCCCCACTGTCAGCCAGTTACAGTTCACCTCTGTGGGCTG
CGGAGCACCTCTGCCGCAGCCCAGACATCTTCCCTGAGCAGAGGCAGAACAAGCATAGGCGCTT
TCAGAATACCCTAGCCGTCCTCCGGAAGTCTGGTTTGCTGGGAATCACTCTGAAAGCCAAGGAG
TTGATTCGTCAGAACCAAGCAACTCAGGTGGAACTGGACCAGCTGAAGGAGCAAACCCAGATGT
TTATAGAGGCCACCAAGAGCAGGGCTCCTCAGGCGTGGGCCAAGTTGCAGGCGTCACTCACATC
TGGGTCCAGTCATTCAGGCAGTGACCTAGACACATTGTCTGACCCCCCAGACATATAGCACAGA
AGCATTTCCAGTTGTTTGAGTTAACTCCTTTGCGTTCACAACTACACTTGTTTTCCACAGCCTA
TTTAAGAGCTTTTCTTTCTAAAGTCACCCACAAAGCCACGTGCCAGTCCCTGGCTGCTGTCTTA
ATCTGTGGCCCATGCACAGGTTAAGTGTGTTAAGTTCGTGAGGACCTCCAGCTGGAAGTGTCTG
TGAGTCCCTTTCCCTTAGCCTGCACGCGCTTAGCTGGTCCTTGGGACAAGGGAGAGACGGCTGT
GTCTCTTCTAGCTGTTACTTCCCATCCTCCTCCTCACTGTCCAGGACCATGGTGCAGTGACATG
GATGAGTGCACACAGTGACACTTGTCCAACAGCCAAGGAGTAGGTGACCTAAGGATCCCTTCAC
TGTCCTCCTTCAAGTATGTTAGTCATGGAGAAAAAGAAGAGGATGTGTTTTCATTTTACCAGGT
GTGGTCTGTTGAGTGAAACCTAGAATGCTTTGGGCCAGGTGCCTGGGGGCAAGCATTTACCACA
TGAGGCTTTGTTCCTTACACTTGAAAGGTAAGGGAGAAAGGGCAAAGCCATCTGACTCACACCG
ATCACACACTGATCTCACTTATACCAGTAGGCAAATACTTCAGATTTTTAAAATATAGAATGGA
TTTAATACTGTCTGGAATTGTATTTGATGAATTGCTTTTTTGATTTAAGGGTCAAAGAAGGCAG
CATTTTGGTCACTAGCTGGAAGGTTTTAGTAATTTATGCTGGAAATAGCACAACCCATCAGAGG
CTTGAGATGGGCCTGTAGGATGGCTCCGTGAGTAAAGGTGCTTACTGCCAATGACCTGAGTCTG
ACCCCTGAACCCCATGATAGACCGAGGGAACCTACTACTGTACATGCACATACACCATGATAAA
TGGATATAAAATTAAAAATAGAAGTCAACGTCAAAACAAGGTAAAACAATCACAAGCTTGAGAT
GGCTTCAGTGGGTCCTCGGGGTCTAGTGTAAGTCCACCCTCAGCTGTCTCTTGTCTGTACCTCA
CCCAGCTGTGTCTGAGGGAAAAATGATCATGCTTATAAATTTAAGTTAAGTAAACCCCAGGCCA
CAGCAACCAGAAAACATCCATTTTCACATCTGGGTTCTCACTCATGCCCTGTCATGATGGGGAC
ACTGTGGAACAGTCTTGCACCTTTGTTTGATGTGGGCAGCAGGGCTGAAGTGTGATGTCCCTCT
CTGAGGCTGGTCTTAGGGTGGAGAGCTTAAGGAGATCCCATTGTCTTCAGCTTCCCTGTGTCTA
AGTGGTAAAGATCCCAAGGCTTGTATCCTGCCTGTTAAAATTTTCATCCTCCTGGAAATCTTTG
TTCTTTACAAATTAACTTGGGTTTTATGACCAGCCTCATCTTTTTCTGCAGAGAGTGTGCTCTT
GGGGCTTTACTAGGTCCAGTTAAGGTTCACATTTATTACATAGCTGGTTGTAATTCTAACATAG
TTTAAAAAGTATAAGACTCAGGTTGGCTCCACTGTGCTCATAAAGATATATGATTTAGATGCGA
CTGGTTTAAAAATGATCAACTTGGTAAAATCTCTGTTCTTTGGTCAACATAGAATTATTACTTG
CTGTTTGCTTTCTGAAAGTTTCTAAAATCAGAGTCAGTGTTTCTGGGTAGGCTCGACTCCTTCC
CTTGATTCCGTGGTATTGTGTTCTGCACTCCACTGGGAAGCATCCTTCCTGGCAGAATGTTTGG
CAGGAAGGCTGCAGAGACAGGAGCATTCAGAGCAGCCTGCACCAGCTGTGCCTTACTGTGTGTC
AGAAGGCTGGGAGCACTTGCTGGGAGCCAAGTATACTACTGCACTGGAAAAGCCCTCTGTGGTG
CTGTAAGTCATGGGACTCTCTTCCCACATTCGGGTTTCATTTCCTGTCCTGTCCCCATAAGAGA
TGATGAGAGCCACCGTGGATCCTCACTGCTGAGTGGTGGGAGGGTTGGCCCCGTCACTGCTCCT
CTGTGATCCTAGAGGCACAGCTGCACATCTCTAGGCTGCTAGCATAGTGCTCTGTTCCTGGAGC
AGCTGGAAGCAGACAGACTCCAGTAGAGAATCCTTTGAGGCCCGAGAGCAGACCAGCACTTAGA
GAAAGTCTGGAGTGGACCAGAAGAATCTTCATTGGTTGCCCAAGGCTGTGAGTAGCAATGGCCT
TAGTGCATGCTATGAGCTCTTCTGAAGCATTATGTAGGGCCGTTGTTTTCTCAAGGTGAGGAGT
CAATTTTAACTCAGACCAGCCCACAGGAGAACCCTTGTCAGTTGTATTGGCAATATCGGACACA
GTTAGAAAGGTTCCCGACTGAAATTGGTTATAGAATGCACTGTCATTTGTAATGTACTACACTG
TTTTTATTGATTATGGTACTGTCTGACCTATCTTTTCTGGTATGACTCCTTCAGCAGACACATT
GCTTCTGCCCATATACTGAAGCGACTCCTTAGGGTAGAGACTACCAAATGTGAGTTCTTCTAAG
AAAGTGTGAAGTCATGTAGAAATTGACTGTGAAATGTCAAAAAAAAAAAAAATAAAAGTCATGT
ACTTGAAAGCTA

hide sequence

RefSeq Acc Id:

XM_017594156 ⟹ XP_017449645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	112,326,140 - 112,344,692 (+)	NCBI
mRatBN7.2	6	106,600,867 - 106,613,732 (+)	NCBI
Rnor_6.0	6	110,975,194 - 110,990,912 (+)	NCBI

Sequence:

show sequence

ATGTATGTATGTGTGGTATTTGGTTGTACTCTGCTCAGTACTTTATTCTAAGAACTGACAGGTT
TATTTGAGAAATCCTGTACGGTTGAGCGGTGGCACTAGGTCACAAGCCACATAAGTCTACTGGG
AAAGCACGCCTTGCTGGTTGATGTTACCTCTCCTCTCCTCAGGGAGGAGGGTGAGTTTATTTGG
TTACCCATTTCAAAAGCCTAATCAAATGTCCCTTTGTTAGCAGTTCACAAAGCTTCCACTGAAT
GTGGTTGCGTGCCTTGAAATCGTGCCTTGAATTCACAATGGAATTAGAGGGCAGCAAGGGGATA
GTGAACCTTTTGAGTGGAAACCATTCTGTTTAGTAAACTTGAAGCTTGGTCAACTGAGCCCACA
GAGAAGTTGTGGCTGAAGTGGAGTAATCCATATGCAAAGACTACCTGTGATCCAGCTTCCAGCC
CTCTTAGACATGGAGAGGAAAGTCCCATCGAGAGAGAGCCCCAGAAGACTCTCTGCCAAGCCAG
GCCGAGGCACGGAGATGAAAAAACTAGCCCGACCACTTGGTGTGGTGGCTGCTGACTCAGACAA
GGACTCCGGCTTTTCAGATGGGAGCTCAGAATGTCTGAGCTCTGCCGAGCAGATGGAGTCAGAG
GACGTGGTGAGCGCCCTGGGCTGGAGCAGAGAGGACAAGCTGAGGCAGAACGCCAGAGCGGCAA
ACCACGCCTTCCCCACACTGTCCCCTATGGTTGTCATGAAGAACGTGCTGGTCAAGCAGGGCAG
CAGCTCATCCCAGCTCCAGTCCTGGACTGTCCAGCCCTCCTTTGAAGTGATCTCAGCGCAGCCA
CAGCTCTTTGTCCTTCATCCACCTGTGCCATCTCCTGTCAGCCCATGCCACACTGGTGAGAAAA
AGTCAGAGTCCAGAAACTACTTGCCCATTCTAAATTCTTATACCAAAATAGCCCCGCACCCAGG
CAAAAGGGGCCTCAGCTCCGAAGAAAGAGGAACAAGTGGGGCACCGAAGAAAATCTGCGTGGAG
AGACTGGGGCCAAGCCTGTCTTCCAGTGAGCCAGCCAAGCCTGGCCGTGTGCTATCCAGTCCTT
TCACTCCAGCCCTACCCAGCTCCAAGCTCACCGAGGACTCGGCTCTGCAAGGAGTGCCCTCCCT
TGGGGCTGGCGGAAGCCCACAGACTCTTCAGCCTGTGTCCAGCAGTCATGTAGCCAAAGCCCCC
AGTCTGACCTTTGCTTCGCCCGCCAGTCCTGTATGTGCATCAGACAGCACTCTGCATGGCTTAG
AGAGCAGCTCCCCTCTCTCCCCACTGTCAGCCAGTTACAGTTCACCTCTGTGGGCTGCGGAGCA
CCTCTGCCGCAGCCCAGACATCTTCCCTGAGCAGAGGCAGAACAAGCATAGGCGCTTTCAGAAT
ACCCTAGCCGTCCTCCGGAAGTCTGGTTTGCTGGGAATCACTCTGAAAGCCAAGGAGTTGATTC
GTCAGAACCAAGCAACTCAGGTGGAACTGGACCAGCTGAAGGAGCAAACCCAGATGTTTATAGA
GGCCACCAAGAGCAGGGCTCCTCAGGCGTGGGCCAAGTTGCAGGCGTCACTCACATCTGGGTCC
AGTCATTCAGGCAGTGACCTAGACACATTGTCTGACCCCCCAGACATATAGCACAGAAGCATTT
CCAGTTGTTTGAGTTAACTCCTTTGCGTTCACAACTACACTTGTTTTCCACAGCCTATTTAAGA
GCTTTTCTTTCTAAAGTCACCCACAAAGCCACGTGCCAGTCCCTGGCTGCTGTCTTAATCTGTG
GCCCATGCACAGGTTAAGTGTGTTAAGTTCGTGAGGACCTCCAGCTGGAAGTGTCTGTGAGTCC
CTTTCCCTTAGCCTGCACGCGCTTAGCTGGTCCTTGGGACAAGGGAGAGACGGCTGTGTCTCTT
CTAGCTGTTACTTCCCATCCTCCTCCTCACTGTCCAGGACCATGGTGCAGTGACATGGATGAGT
GCACACAGTGACACTTGTCCAACAGCCAAGGAGTAGGTGACCTAAGGATCCCTTCACTGTCCTC
CTTCAAGTATGTTAGTCATGGAGAAAAAGAAGAGGATGTGTTTTCATTTTACCAGGTGTGGTCT
GTTGAGTGAAACCTAGAATGCTTTGGGCCAGGTGCCTGGGGGCAAGCATTTACCACATGAGGCT
TTGTTCCTTACACTTGAAAGGTAAGGGAGAAAGGGCAAAGCCATCTGACTCACACCGATCACAC
ACTGATCTCACTTATACCAGTAGGCAAATACTTCAGATTTTTAAAATATAGAATGGATTTAATA
CTGTCTGGAATTGTATTTGATGAATTGCTTTTTTGATTTAAGGGTCAAAGAAGGCAGCATTTTG
GTCACTAGCTGGAAGGTTTTAGTAATTTATGCTGGAAATAGCACAACCCATCAGAGGCTTGAGA
TGGGCCTGTAGGATGGCTCCGTGAGTAAAGGTGCTTACTGCCAATGACCTGAGTCTGACCCCTG
AACCCCATGATAGACCGAGGGAACCTACTACTGTACATGCACATACACCATGATAAATGGATAT
AAAATTAAAAATAGAAGTCAACGTCAAAACAAGGTAAAACAATCACAAGCTTGAGATGGCTTCA
GTGGGTCCTCGGGGTCTAGTGTAAGTCCACCCTCAGCTGTCTCTTGTCTGTACCTCACCCAGCT
GTGTCTGAGGGAAAAATGATCATGCTTATAAATTTAAGTTAAGTAAACCCCAGGCCACAGCAAC
CAGAAAACATCCATTTTCACATCTGGGTTCTCACTCATGCCCTGTCATGATGGGGACACTGTGG
AACAGTCTTGCACCTTTGTTTGATGTGGGCAGCAGGGCTGAAGTGTGATGTCCCTCTCTGAGGC
TGGTCTTAGGGTGGAGAGCTTAAGGAGATCCCATTGTCTTCAGCTTCCCTGTGTCTAAGTGGTA
AAGATCCCAAGGCTTGTATCCTGCCTGTTAAAATTTTCATCCTCCTGGAAATCTTTGTTCTTTA
CAAATTAACTTGGGTTTTATGACCAGCCTCATCTTTTTCTGCAGAGAGTGTGCTCTTGGGGCTT
TACTAGGTCCAGTTAAGGTTCACATTTATTACATAGCTGGTTGTAATTCTAACATAGTTTAAAA
AGTATAAGACTCAGGTTGGCTCCACTGTGCTCATAAAGATATATGATTTAGATGCGACTGGTTT
AAAAATGATCAACTTGGTAAAATCTCTGTTCTTTGGTCAACATAGAATTATTACTTGCTGTTTG
CTTTCTGAAAGTTTCTAAAATCAGAGTCAGTGTTTCTGGGTAGGCTCGACTCCTTCCCTTGATT
CCGTGGTATTGTGTTCTGCACTCCACTGGGAAGCATCCTTCCTGGCAGAATGTTTGGCAGGAAG
GCTGCAGAGACAGGAGCATTCAGAGCAGCCTGCACCAGCTGTGCCTTACTGTGTGTCAGAAGGC
TGGGAGCACTTGCTGGGAGCCAAGTATACTACTGCACTGGAAAAGCCCTCTGTGGTGCTGTAAG
TCATGGGACTCTCTTCCCACATTCGGGTTTCATTTCCTGTCCTGTCCCCATAAGAGATGATGAG
AGCCACCGTGGATCCTCACTGCTGAGTGGTGGGAGGGTTGGCCCCGTCACTGCTCCTCTGTGAT
CCTAGAGGCACAGCTGCACATCTCTAGGCTGCTAGCATAGTGCTCTGTTCCTGGAGCAGCTGGA
AGCAGACAGACTCCAGTAGAGAATCCTTTGAGGCCCGAGAGCAGACCAGCACTTAGAGAAAGTC
TGGAGTGGACCAGAAGAATCTTCATTGGTTGCCCAAGGCTGTGAGTAGCAATGGCCTTAGTGCA
TGCTATGAGCTCTTCTGAAGCATTATGTAGGGCCGTTGTTTTCTCAAGGTGAGGAGTCAATTTT
AACTCAGACCAGCCCACAGGAGAACCCTTGTCAGTTGTATTGGCAATATCGGACACAGTTAGAA
AGGTTCCCGACTGAAATTGGTTATAGAATGCACTGTCATTTGTAATGTACTACACTGTTTTTAT
TGATTATGGTACTGTCTGACCTATCTTTTCTGGTATGACTCCTTCAGCAGACACATTGCTTCTG
CCCATATACTGAAGCGACTCCTTAGGGTAGAGACTACCAAATGTGAGTTCTTCTAAGAAAGTGT
GAAGTCATGTAGAAATTGACTGTGAAATGTCAAAAAAAAAAAAAATAAAAGTCATGTACTTGAA
AGCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101514	(Get FASTA)	NCBI Sequence Viewer
	XP_006240439	(Get FASTA)	NCBI Sequence Viewer
	XP_006240440	(Get FASTA)	NCBI Sequence Viewer
	XP_017449645	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81616	(Get FASTA)	NCBI Sequence Viewer
	EDL81617	(Get FASTA)	NCBI Sequence Viewer
	EDL81618	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014980.7
	ENSRNOP00000083776.1
	ENSRNOP00000085137
	ENSRNOP00000085137.1
	ENSRNOP00000087410
	ENSRNOP00000087410.1
	ENSRNOP00000096737
	ENSRNOP00000096737.1

RefSeq Acc Id:

NP_001101514 ⟸ NM_001108044

- UniProtKB:

A0A8I6A767 (UniProtKB/TrEMBL), A6JE72 (UniProtKB/TrEMBL), A0A8I5ZWM8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQRLPVIQLPALLDMERKVPSRESPRRLSAKPGRGTEMKKLARPLGVVAADSDKDSGFSDGSSE
CLSSAEQMESEDVVSALGWSREDKLRQNARAANHAFPTLSPMVVMKNVLVKQGSSSSQLQSWTV
QPSFEVISAQPQLFVLHPPVPSPVSPCHTGEKKSESRNYLPILNSYTKIAPHPGKRGLSSEERG
TSGAPKKICVERLGPSLSSSEPAKPGRVLSSPFTPALPSSKLTEDSALQGVPSLGAGGSPQTLQ
PVSSSHVAKAPSLTFASPASPVCASDSTLHGLESSSPLSPLSASYSSPLWAAEHLCRSPDIFPE
QRQNKHRRFQNTLAVLRKSGLLGITLKAKELIRQNQATQVELDQLKEQTQMFIEATKSRAPQAW
AKLQASLTSGSSHSGSDLDTLSDPPDI

hide sequence

RefSeq Acc Id:	XP_006240439 ⟸ XM_006240377
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B4P9 (UniProtKB/TrEMBL), A0A8I5ZWM8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVRLRGWDWEHRESRVIHMQRLPVIQLPALLDMERKVPSRESPRRLSAKPGRGTEMKKLARPL GVVAADSDKDSGFSDGSSECLSSAEQMESEDVVSALGWSREDKLRQNARAANHAFPTLSPMVVM KNVLVKQGSSSSQLQSWTVQPSFEVISAQPQLFVLHPPVPSPVSPCHTGEKKSESRNYLPILNS YTKIAPHPGKRGLSSEERGTSGAPKKICVERLGPSLSSSEPAKPGRVLSSPFTPALPSSKLTED SALQGVPSLGAGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESSSPLSPLSASY SSPLWAAEHLCRSPDIFPEQRQNKHRRFQNTLAVLRKSGLLGITLKAKELIRQNQATQVELDQL KEQTQMFIEATKSRAPQAWAKLQASLTSGSSHSGSDLDTLSDPPDI hide sequence

RefSeq Acc Id:	XP_006240440 ⟸ XM_006240378
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A3A2 (UniProtKB/TrEMBL), A0A8I5ZWM8 (UniProtKB/TrEMBL), D4A489 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPFERVIHMQRLPVIQLPALLDMERKVPSRESPRRLSAKPGRGTEMKKLARPLGVVAADSDKD SGFSDGSSECLSSAEQMESEDVVSALGWSREDKLRQNARAANHAFPTLSPMVVMKNVLVKQGSS SSQLQSWTVQPSFEVISAQPQLFVLHPPVPSPVSPCHTGEKKSESRNYLPILNSYTKIAPHPGK RGLSSEERGTSGAPKKICVERLGPSLSSSEPAKPGRVLSSPFTPALPSSKLTEDSALQGVPSLG AGGSPQTLQPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESSSPLSPLSASYSSPLWAAEHL CRSPDIFPEQRQNKHRRFQNTLAVLRKSGLLGITLKAKELIRQNQATQVELDQLKEQTQMFIEA TKSRAPQAWAKLQASLTSGSSHSGSDLDTLSDPPDI hide sequence

RefSeq Acc Id:	XP_017449645 ⟸ XM_017594156
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A767 (UniProtKB/TrEMBL), A6JE72 (UniProtKB/TrEMBL), A0A8I5ZWM8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRLPVIQLPALLDMERKVPSRESPRRLSAKPGRGTEMKKLARPLGVVAADSDKDSGFSDGSSE CLSSAEQMESEDVVSALGWSREDKLRQNARAANHAFPTLSPMVVMKNVLVKQGSSSSQLQSWTV QPSFEVISAQPQLFVLHPPVPSPVSPCHTGEKKSESRNYLPILNSYTKIAPHPGKRGLSSEERG TSGAPKKICVERLGPSLSSSEPAKPGRVLSSPFTPALPSSKLTEDSALQGVPSLGAGGSPQTLQ PVSSSHVAKAPSLTFASPASPVCASDSTLHGLESSSPLSPLSASYSSPLWAAEHLCRSPDIFPE QRQNKHRRFQNTLAVLRKSGLLGITLKAKELIRQNQATQVELDQLKEQTQMFIEATKSRAPQAW AKLQASLTSGSSHSGSDLDTLSDPPDI hide sequence

Ensembl Acc Id:

ENSRNOP00000014980 ⟸ ENSRNOT00000014980

Ensembl Acc Id:

ENSRNOP00000087410 ⟸ ENSRNOT00000116697

Ensembl Acc Id:

ENSRNOP00000083776 ⟸ ENSRNOT00000100827

Ensembl Acc Id:

ENSRNOP00000085137 ⟸ ENSRNOT00000118824

Ensembl Acc Id:

ENSRNOP00000096737 ⟸ ENSRNOT00000114853

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A489-F1-model_v2	AlphaFold	D4A489	1-411	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694750

Promoter ID:

EPDNEW_R5275

Type:

initiation region

Name:

Cipc_1

Description:

CLOCK-interacting pacemaker

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	110,968,119 - 110,968,179	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309492	AgrOrtholog
BioCyc Gene	G2FUF-36732	BioCyc
Ensembl Genes	ENSRNOG00000011111	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014980.8	UniProtKB/TrEMBL
	ENSRNOT00000100827.2	UniProtKB/TrEMBL
	ENSRNOT00000114853	ENTREZGENE
	ENSRNOT00000114853.2	UniProtKB/TrEMBL
	ENSRNOT00000116697	ENTREZGENE
	ENSRNOT00000116697.2	UniProtKB/TrEMBL
	ENSRNOT00000118824	ENTREZGENE
	ENSRNOT00000118824.2	UniProtKB/TrEMBL
InterPro	CIPC	UniProtKB/TrEMBL
KEGG Report	rno:314330	UniProtKB/TrEMBL
NCBI Gene	314330	ENTREZGENE
PANTHER	CLOCK-INTERACTING PACEMAKER	UniProtKB/TrEMBL
	PTHR34648	UniProtKB/TrEMBL
Pfam	CiPC	UniProtKB/TrEMBL
PhenoGen	Cipc	PhenoGen
RatGTEx	ENSRNOG00000011111	RatGTEx
UniProt	A0A8I5ZWM8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3A2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A767	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B4P9	ENTREZGENE, UniProtKB/TrEMBL
	A6JE72	ENTREZGENE, UniProtKB/TrEMBL
	D4A489	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-02-04	Cipc	CLOCK-interacting pacemaker	RGD1309492	similar to mKIAA1737 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1309492	similar to mKIAA1737 protein	RGD1309492_predicted	similar to mKIAA1737 protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1309492_predicted	similar to mKIAA1737 protein (predicted)	LOC314330_predicted		Symbol and Name status set to approved	1331353	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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