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Gene: Spsb1 (splA/ryanodine receptor domain and SOCS box containing 1) Rattus norvegicus

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Symbol:

Spsb1

Name:

splA/ryanodine receptor domain and SOCS box containing 1

RGD ID:

1309319

Description:

Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be located in cytosol. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB1 (splA/ryanodine receptor domain and SOCS box containing 1); INTERACTS WITH (+)-schisandrin B; (R,R,R)-alpha-tocopherol; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313722; RGD1309319; similar to SPRY domain-containing SOCS box protein SSB-1; SPRY domain-containing SOCS box protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	165,641,255 - 165,701,482 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	165,642,851 - 165,654,225 (-)	Ensembl				GRCr8
mRatBN7.2	5	160,358,292 - 160,418,541 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	160,358,308 - 160,418,468 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	163,076,400 - 163,087,774 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	164,898,077 - 164,909,555 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	164,854,450 - 164,865,926 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	166,913,734 - 166,978,534 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	166,913,735 - 166,926,636 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	170,555,623 - 170,619,867 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	167,014,271 - 167,025,579 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	158,623,982 - 158,634,651 (-)	NCBI		Celera
RGSC_v3.1	5	167,022,865 - 167,035,827 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(R,R,R)-alpha-tocopherol (EXP)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxyethyl methacrylate (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

butan-1-ol (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chloroacetaldehyde (ISO)

chloroprene (ISO)

chlorpromazine (EXP)

choline (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (EXP,ISO)

D-glucose (ISO)

DDE (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP,ISO)

diethylstilbestrol (ISO)

dimethylarsinous acid (ISO)

dioxygen (ISO)

disulfiram (ISO)

diuron (EXP)

doramapimod (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenofibrate (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (ISO)

GSK-J4 (ISO)

ifosfamide (ISO)

isoprenaline (ISO)

ketamine (EXP)

L-ascorbic acid (EXP)

L-methionine (ISO)

lead diacetate (ISO)

Licochalcone B (ISO)

mercury dichloride (EXP)

metformin (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

Soman (EXP)

sotorasib (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein ubiquitination (IEA,ISO)

ubiquitin-dependent protein catabolic process (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

Molecular Function

protein binding (ISO)

ubiquitin-like ligase-substrate adaptor activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19028597	PMID:21199876

Genomics

Comparative Map Data

Spsb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	165,641,255 - 165,701,482 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	165,642,851 - 165,654,225 (-)	Ensembl				GRCr8
mRatBN7.2	5	160,358,292 - 160,418,541 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	160,358,308 - 160,418,468 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	163,076,400 - 163,087,774 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	164,898,077 - 164,909,555 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	164,854,450 - 164,865,926 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	166,913,734 - 166,978,534 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	166,913,735 - 166,926,636 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	170,555,623 - 170,619,867 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	167,014,271 - 167,025,579 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	158,623,982 - 158,634,651 (-)	NCBI		Celera
RGSC_v3.1	5	167,022,865 - 167,035,827 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

SPSB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	9,292,894 - 9,369,532 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	9,292,101 - 9,369,532 (+)	Ensembl			hg38	GRCh38
GRCh37	1	9,352,953 - 9,429,591 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	9,275,571 - 9,352,178 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	8,462,669 - 8,539,361 (+)	NCBI		Celera
Cytogenetic Map	1	p36.22	NCBI
HuRef	1	8,547,970 - 8,579,365 (+)	NCBI		HuRef
CHM1_1	1	9,388,399 - 9,419,828 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	8,827,769 - 8,904,391 (+)	NCBI		T2T-CHM13v2.0

Spsb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	149,980,740 - 150,039,494 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	149,980,740 - 150,039,500 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	149,896,283 - 149,955,006 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	149,896,283 - 149,955,043 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	149,270,392 - 149,329,115 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	148,740,083 - 148,798,806 (-)	NCBI		MGSCv36	mm8
Celera	4	152,167,650 - 152,226,371 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	80.46	NCBI

Spsb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	4,022,306 - 4,115,077 (-)	Ensembl
ChiLan1.0	NW_004955486	4,022,307 - 4,061,111 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPSB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	218,856,729 - 218,935,323 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	217,504,077 - 217,580,356 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	8,053,596 - 8,132,143 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	9,349,825 - 9,363,624 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	9,349,825 - 9,363,624 (+)	Ensembl			panPan2	panpan1.1

SPSB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	62,640,420 - 62,669,606 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	62,639,629 - 62,667,790 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	62,616,269 - 62,685,333 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	62,825,418 - 62,894,575 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	62,825,374 - 62,894,572 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	62,824,606 - 62,892,430 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	62,687,237 - 62,756,451 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	63,091,729 - 63,160,856 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spsb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	32,918,113 - 32,970,426 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	3,427,761 - 3,455,670 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936623	3,448,787 - 3,455,670 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPSB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	69,720,806 - 69,791,119 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	69,720,538 - 69,789,566 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SPSB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	122,398,856 - 122,474,175 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	122,396,931 - 122,474,190 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	26,413,485 - 26,489,158 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spsb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	2,964,984 - 2,983,433 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624818	2,965,222 - 3,014,544 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spsb1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	10,802,456 - 10,860,685 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spsb1
198 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	104
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000023287
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	160111176	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

BE114497

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	160,399,752 - 160,399,902 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	166,959,629 - 166,959,778	NCBI	Rnor6.0
Rnor_5.0	5	170,601,037 - 170,601,186	UniSTS	Rnor5.0
RGSC_v3.4	5	167,053,914 - 167,054,063	UniSTS	RGSC3.4
Celera	5	158,663,127 - 158,663,276	UniSTS
RH 3.4 Map	5	1115.0	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH128720

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	160,358,459 - 160,358,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	166,913,902 - 166,914,106	NCBI	Rnor6.0
Rnor_5.0	5	170,555,791 - 170,555,995	UniSTS	Rnor5.0
RGSC_v3.4	5	167,012,843 - 167,013,047	UniSTS	RGSC3.4
Celera	5	158,622,554 - 158,622,758	UniSTS
RH 3.4 Map	5	1119.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH129227

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	160,358,949 - 160,359,157 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	166,914,392 - 166,914,599	NCBI	Rnor6.0
Rnor_5.0	5	170,556,281 - 170,556,488	UniSTS	Rnor5.0
RGSC_v3.4	5	167,013,333 - 167,013,540	UniSTS	RGSC3.4
Celera	5	158,623,044 - 158,623,251	UniSTS
RH 3.4 Map	5	1121.3	UniSTS
Cytogenetic Map	5	q36	UniSTS

BE106389

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	165,642,869 - 165,643,064 (+)	Marker Load Pipeline
mRatBN7.2	5	160,359,906 - 160,360,100 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	166,915,349 - 166,915,542	NCBI	Rnor6.0
Rnor_5.0	5	170,557,238 - 170,557,431	UniSTS	Rnor5.0
RGSC_v3.4	5	167,014,290 - 167,014,483	UniSTS	RGSC3.4
Celera	5	158,624,001 - 158,624,194	UniSTS
RH 3.4 Map	5	1115.5	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	355	192	11	142	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023287 ⟹ ENSRNOP00000023287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	166,915,330 - 166,926,636 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085251 ⟹ ENSRNOP00000074486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	165,642,851 - 165,654,225 (-)	Ensembl
mRatBN7.2 Ensembl	5	160,358,308 - 160,418,468 (-)	Ensembl
Rnor_6.0 Ensembl	5	166,913,735 - 166,924,136 (-)	Ensembl

RefSeq Acc Id:

NM_001107994 ⟹ NP_001101464

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	165,642,851 - 165,654,225 (-)	NCBI
mRatBN7.2	5	160,359,888 - 160,371,262 (-)	NCBI
Rnor_6.0	5	166,915,330 - 166,926,636 (-)	NCBI
Rnor_5.0	5	170,555,623 - 170,619,867 (-)	NCBI
RGSC_v3.4	5	167,014,271 - 167,025,579 (-)	RGD
Celera	5	158,623,982 - 158,634,651 (-)	RGD

Sequence:

show sequence

GTTTCAGATAAGCATGTGACGCACGGGCGGCACCCACGTTGTAGATGAACAGAGGGAAACTGGG
ACAAACCAAAATCGAATCGTAGTCGGTGTACAAGGCACGGTGTCCTGAGTGAGTTTGGGAGCCT
TGGAGACAGGTCTGGGGACATGCCCTGCGGGCTACAGCCCAGGGAGAGGCAATACAGAGCGCTT
CACAACCTTTGGAAATCGCCTAGCAACCTCCCTTAGGGGTTCTGTGTGGCCCTGACTAGAAATC
TGGAATCAACGCCCCAAGATTGATGAGTTTGCCTTGGGAGTCAGTGAAAAGGTGAAAGAAAGGC
CAACATGGGTCAAAAGGTGACGGGAGGGATCAAGACTGTGGACATGCGGGACCCCACATACCGA
CCTCTAAAGCAGGAGCTCCAGGGTTTGGATTATTGCAAGCCCACCCGGCTGGACCTGCTGCTCG
ACATGCCCCCCGTGTCCTACGATGTCCAGCTGCTCCACTCCTGGAACAACAATGACCGTTCGCT
CAACGTCTTTGTGAAGGAAGATGACAAGTTGATCTTTCACCGGCATCCGGTGGCCCAGAGCACG
GACGCCATCAGGGGCAAAGTTGGGTACACACGTGGACTACACGTATGGCAGATCACATGGGCCA
TGAGGCAACGAGGCACGCATGCCGTGGTGGGGGTGGCCACAGCAGACGCCCCTTTGCATTCTGT
TGGGTACACAACCCTTGTAGGAAATAACCATGAATCCTGGGGCTGGGACCTGGGGCGTAACCGT
CTCTACCACGACGGCAAGAACCAGCCAAGTAAAACATACCCAGCCTTCCTGGAGCCAGATGAGA
CTTTCATTGTCCCAGACTCCTTCCTTGTGGCCCTGGACATGGATGATGGGACCTTGAGTTTCAT
CGTGGATGGACAGTACATGGGAGTGGCTTTCCGGGGACTCAAGGGTAAAAAGCTGTATCCTGTA
GTGAGTGCCGTCTGGGGCCACTGTGAGATCCGCATGCGCTACGTGAACGGACTTGATCCTGAGC
CCCTGCCACTCATGGACCTGTGCCGGCGTTCGGTGCGCCTAGCGCTAGGAAAGGAACGTCTGGG
TGCCATCCCCGCTCTGCCGCTACCTGCCTCCCTCAAAGCCTACCTCCTCTACCAGTGATCCGCA
TCCCAGGATCGCCGTATGACAGCCACCTGGTGCCAACTCACTGAGCCTTTGGGGTCCACCGACC
CCTGCGCCTGGGATGGACGCCCACCCTCAGGCATGGGCAGACGTACCCTCTCATCCCACCAGCT
GCCTCTGCTGGGTGGACCAATGCCAACGGACTTCTCCCTTCCCAACACTGGCTGAAGCAGCAGC
ATCCAGGCCCTTCCCTGAACCAGATGCAGAGAATAAACTATGAGAACCTCAAAAAAAAAAAAAA
AAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239462 ⟹ XP_006239524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	165,641,255 - 165,701,482 (-)	NCBI
mRatBN7.2	5	160,358,292 - 160,418,541 (-)	NCBI
Rnor_6.0	5	166,913,734 - 166,978,534 (-)	NCBI
Rnor_5.0	5	170,555,623 - 170,619,867 (-)	NCBI

Sequence:

show sequence

GGGGCATACAAACCCTGCCCACGGCGCGTCCCTCTTTTTCTCCGCCCCCCCCACTTTAGAGCGG
TCGGTGGCTTTTTCTTCTCAGCGCACGAGTCGCGCTGGAGCGGCCCGCGCGCTTGCCGCAGGAA
CCAGCTCCAGGCGCTGGCGCCGGGGCCGCGGAGAGGAAGCGACTTCGCTCTCTGCAGCGGGCGC
GGCCCTGGGCACCGCGAGCCTCCTGAGCTCCCGGAGCTGCGGCCTCTCTGTGCGCGGCAATACA
GAGCGCTTCACAACCTTTGGAAATCGCCTAGCAACCTCCCTTAGGGGTTCTGTGTGGCCCTGAC
TAGAAATCTGGAATCAACGCCCCAAGATTGATGAGTTTGCCTTGGGAGTCAGTGAAAAGGTGAA
AGAAAGGCCAACATGGGTCAAAAGGTGACGGGAGGGATCAAGACTGTGGACATGCGGGACCCCA
CATACCGACCTCTAAAGCAGGAGCTCCAGGGTTTGGATTATTGCAAGCCCACCCGGCTGGACCT
GCTGCTCGACATGCCCCCCGTGTCCTACGATGTCCAGCTGCTCCACTCCTGGAACAACAATGAC
CGTTCGCTCAACGTCTTTGTGAAGGAAGATGACAAGTTGATCTTTCACCGGCATCCGGTGGCCC
AGAGCACGGACGCCATCAGGGGCAAAGTTGGGTACACACGTGGACTACACGTATGGCAGATCAC
ATGGGCCATGAGGCAACGAGGCACGCATGCCGTGGTGGGGGTGGCCACAGCAGACGCCCCTTTG
CATTCTGTTGGGTACACAACCCTTGTAGGAAATAACCATGAATCCTGGGGCTGGGACCTGGGGC
GTAACCGTCTCTACCACGACGGCAAGAACCAGCCAAGTAAAACATACCCAGCCTTCCTGGAGCC
AGATGAGACTTTCATTGTCCCAGACTCCTTCCTTGTGGCCCTGGACATGGATGATGGGACCTTG
AGTTTCATCGTGGATGGACAGTACATGGGAGTGGCTTTCCGGGGACTCAAGGGTAAAAAGCTGT
ATCCTGTAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGCATGCGCTACGTGAACGGACTTGA
TCCTGAGCCCCTGCCACTCATGGACCTGTGCCGGCGTTCGGTGCGCCTAGCGCTAGGAAAGGAA
CGTCTGGGTGCCATCCCCGCTCTGCCGCTACCTGCCTCCCTCAAAGCCTACCTCCTCTACCAGT
GATCCGCATCCCAGGATCGCCGTATGACAGCCACCTGGTGCCAACTCACTGAGCCTTTGGGGTC
CACCGACCCCTGCGCCTGGGATGGACGCCCACCCTCAGGCATGGGCAGACGTACCCTCTCATCC
CACCAGCTGCCTCTGCTGGGTGGACCAATGCCAACGGACTTCTCCCTTCCCAACACTGGCTGAA
GCAGCAGCATCCAGGCCCTTCCCTGAACCAGATGCAGAGAATAAACTATGAGAACCTCTCTCAG
GCGCCTCTGCTCTCCAGTGGAGTGGGCTGCCCCCCCACTACTCCCTGAAGAGAGAGTCTACAGC
CACCTGGGGGGGTTCCTGGGAGGTGAGACGAGTGGGAGATGCCGGGGCAGATCCCAAAAGCAGG
AATATGCAGGACCAGGCCACACCGATGAAGCTCAGGATGTCACATACCATGGACACTGAGACAG
AACCCCAGGCTGGACCTCCCTCGGGCCAGCTCTAGTGTCAGCTGCCGGTGCTCCGTGCCCTGTA
TTTATTCTTTAAACAGTAGCAAAGGCCGTTTATTTATTCCACTGAGAAAGGAAACCTTGTTGGG
TGGCTTCCCTCGATGTGCTCTGTTGCTTTCCCCCCACCTGCCACCTCCCTGGAATGTGTGTGCC
ACACCCGTCCTTCTCCTGGGGCCAGGCCTGTGGCACGTGAGCTGGTGTGCACAGATACAAGTAT
GTCATTGTGTACGACCTTTGACCCCGTTCCCAAGTAGCTCTGCGCCAAGCACCAGAGCAGAACC
TGAGTCCCCAGGTACCTGCTCCTGTTACCTGGAGCGTCCATACACCATCACACGTGTTTTGATC
TCTCGTCTTCCGTGTGCTTTGAATTTTGCCCCCCCCCAATTTTTCTGATATTTCCTGTTGAATC
CTCCAAAGTTCTAGACCTGGAGGACCATCGGGACACCGGGGGTGAGGGGAGGGGTCTCCAGCCC
CTGGGAAAGCCACAGGCAAGGCAGGATTAGACCTTGTCTCACACACACACCCTCAAGCCTCAGC
AGTGGCTGTAGGGTGGACAGGACGGGTGCCTGTCTCCTGCAGCACACCAATGGAGCACCACTGC
TCCGGCTCTCTGGGCATGTGGTCGGTTGGGAGAGGGCTTGCCTAGCACGCAGGAAGCTCAGGTT
CCATCCCCTGCACCAAGGAGAATCAAAGCTCAGGAGGCTGAGGCAGGGGGATTGCTGTTCAGTG
CTGTACAGAGGTCGTGGACATCCCGGGCTGTATTAAATCTTGTCCTTTAAGAAAAAAAGAAAAG
AAACCAACTTCCATCGAATCTGAGTTCTGTTCATTTCTGCACAGGTACAGTAGATGACTTTATT
TGTTGAAAATGTTTAATATATTTACATAGATATATTTGTAAGAATCATTTTAAGCAGCTGCTGT
AGGGTACCTTTTTTAAAAAATAAATAAACATCTTCCAGTAGAGTATAATTTTTAAGGCACAGAG
GTGGTGCCGAGACTAGATAAAGAATCTAAGTCATTCCCTCTGCGTTTTGAGGTCCTTCTCCTTT
TTTGGGAGGGGGGCCTTTTGTCAGACAGAAATCTTACTCGTTCTGGTTTTGGAGCGGATCACAT
TCAGCCGCATAGATCCCAGCTTGATCTCCACCCGGCCGTACCCTCACGGATGCTGGCGAACAGC
AAGGCTCTCCTGTGTCCCCCATACTCCGCCGCCCCAGGACTCACCACACCTCCCTGCCGTCCCG
GCACCATCACCGTAAAGCCTTGTGGCATGTATAGTTCTGAAATCCCCGTTCTGTTCTGTTTTAT
GATGACTCATATCAGTCAGTAACCTAATAAAGGAAAGTTTGTTAAAATATGAAA

hide sequence

RefSeq Acc Id:

XM_008764258 ⟹ XP_008762480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	165,641,255 - 165,654,297 (-)	NCBI
mRatBN7.2	5	160,358,292 - 160,371,615 (-)	NCBI
Rnor_6.0	5	166,913,734 - 166,926,702 (-)	NCBI

Sequence:

show sequence

ATTCTAGAACATCAGAAGTAAAATGCCAGTTGTGCCAAGCCCTCTCTAGAACGTTGTCTCCACT
GAGTTTCAGATAAGCATGTGACGCACGGGCGGCACCCACGTTGTAGATGAACAGAGGGAAACTG
GGACAAACCAAAATCGAATCGTAGTCGGTGTACAAGGCACGGTGTCCTGAGCAATACAGAGCGC
TTCACAACCTTTGGAAATCGCCTAGCAACCTCCCTTAGGGGTTCTGTGTGGCCCTGACTAGAAA
TCTGGAATCAACGCCCCAAGATTGATGAGTTTGCCTTGGGAGTCAGTGAAAAGGTGAAAGAAAG
GCCAACATGGGTCAAAAGGTGACGGGAGGGATCAAGACTGTGGACATGCGGGACCCCACATACC
GACCTCTAAAGCAGGAGCTCCAGGGTTTGGATTATTGCAAGCCCACCCGGCTGGACCTGCTGCT
CGACATGCCCCCCGTGTCCTACGATGTCCAGCTGCTCCACTCCTGGAACAACAATGACCGTTCG
CTCAACGTCTTTGTGAAGGAAGATGACAAGTTGATCTTTCACCGGCATCCGGTGGCCCAGAGCA
CGGACGCCATCAGGGGCAAAGTTGGGTACACACGTGGACTACACGTATGGCAGATCACATGGGC
CATGAGGCAACGAGGCACGCATGCCGTGGTGGGGGTGGCCACAGCAGACGCCCCTTTGCATTCT
GTTGGGTACACAACCCTTGTAGGAAATAACCATGAATCCTGGGGCTGGGACCTGGGGCGTAACC
GTCTCTACCACGACGGCAAGAACCAGCCAAGTAAAACATACCCAGCCTTCCTGGAGCCAGATGA
GACTTTCATTGTCCCAGACTCCTTCCTTGTGGCCCTGGACATGGATGATGGGACCTTGAGTTTC
ATCGTGGATGGACAGTACATGGGAGTGGCTTTCCGGGGACTCAAGGGTAAAAAGCTGTATCCTG
TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGCATGCGCTACGTGAACGGACTTGATCCTGA
GCCCCTGCCACTCATGGACCTGTGCCGGCGTTCGGTGCGCCTAGCGCTAGGAAAGGAACGTCTG
GGTGCCATCCCCGCTCTGCCGCTACCTGCCTCCCTCAAAGCCTACCTCCTCTACCAGTGATCCG
CATCCCAGGATCGCCGTATGACAGCCACCTGGTGCCAACTCACTGAGCCTTTGGGGTCCACCGA
CCCCTGCGCCTGGGATGGACGCCCACCCTCAGGCATGGGCAGACGTACCCTCTCATCCCACCAG
CTGCCTCTGCTGGGTGGACCAATGCCAACGGACTTCTCCCTTCCCAACACTGGCTGAAGCAGCA
GCATCCAGGCCCTTCCCTGAACCAGATGCAGAGAATAAACTATGAGAACCTCTCTCAGGCGCCT
CTGCTCTCCAGTGGAGTGGGCTGCCCCCCCACTACTCCCTGAAGAGAGAGTCTACAGCCACCTG
GGGGGGTTCCTGGGAGGTGAGACGAGTGGGAGATGCCGGGGCAGATCCCAAAAGCAGGAATATG
CAGGACCAGGCCACACCGATGAAGCTCAGGATGTCACATACCATGGACACTGAGACAGAACCCC
AGGCTGGACCTCCCTCGGGCCAGCTCTAGTGTCAGCTGCCGGTGCTCCGTGCCCTGTATTTATT
CTTTAAACAGTAGCAAAGGCCGTTTATTTATTCCACTGAGAAAGGAAACCTTGTTGGGTGGCTT
CCCTCGATGTGCTCTGTTGCTTTCCCCCCACCTGCCACCTCCCTGGAATGTGTGTGCCACACCC
GTCCTTCTCCTGGGGCCAGGCCTGTGGCACGTGAGCTGGTGTGCACAGATACAAGTATGTCATT
GTGTACGACCTTTGACCCCGTTCCCAAGTAGCTCTGCGCCAAGCACCAGAGCAGAACCTGAGTC
CCCAGGTACCTGCTCCTGTTACCTGGAGCGTCCATACACCATCACACGTGTTTTGATCTCTCGT
CTTCCGTGTGCTTTGAATTTTGCCCCCCCCCAATTTTTCTGATATTTCCTGTTGAATCCTCCAA
AGTTCTAGACCTGGAGGACCATCGGGACACCGGGGGTGAGGGGAGGGGTCTCCAGCCCCTGGGA
AAGCCACAGGCAAGGCAGGATTAGACCTTGTCTCACACACACACCCTCAAGCCTCAGCAGTGGC
TGTAGGGTGGACAGGACGGGTGCCTGTCTCCTGCAGCACACCAATGGAGCACCACTGCTCCGGC
TCTCTGGGCATGTGGTCGGTTGGGAGAGGGCTTGCCTAGCACGCAGGAAGCTCAGGTTCCATCC
CCTGCACCAAGGAGAATCAAAGCTCAGGAGGCTGAGGCAGGGGGATTGCTGTTCAGTGCTGTAC
AGAGGTCGTGGACATCCCGGGCTGTATTAAATCTTGTCCTTTAAGAAAAAAAGAAAAGAAACCA
ACTTCCATCGAATCTGAGTTCTGTTCATTTCTGCACAGGTACAGTAGATGACTTTATTTGTTGA
AAATGTTTAATATATTTACATAGATATATTTGTAAGAATCATTTTAAGCAGCTGCTGTAGGGTA
CCTTTTTTAAAAAATAAATAAACATCTTCCAGTAGAGTATAATTTTTAAGGCACAGAGGTGGTG
CCGAGACTAGATAAAGAATCTAAGTCATTCCCTCTGCGTTTTGAGGTCCTTCTCCTTTTTTGGG
AGGGGGGCCTTTTGTCAGACAGAAATCTTACTCGTTCTGGTTTTGGAGCGGATCACATTCAGCC
GCATAGATCCCAGCTTGATCTCCACCCGGCCGTACCCTCACGGATGCTGGCGAACAGCAAGGCT
CTCCTGTGTCCCCCATACTCCGCCGCCCCAGGACTCACCACACCTCCCTGCCGTCCCGGCACCA
TCACCGTAAAGCCTTGTGGCATGTATAGTTCTGAAATCCCCGTTCTGTTCTGTTTTATGATGAC
TCATATCAGTCAGTAACCTAATAAAGGAAAGTTTGTTAAAATATGAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101464	(Get FASTA)	NCBI Sequence Viewer
	NP_001423805	(Get FASTA)	NCBI Sequence Viewer
	NP_001423806	(Get FASTA)	NCBI Sequence Viewer
	XP_006239524	(Get FASTA)	NCBI Sequence Viewer
	XP_008762480	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58604	(Get FASTA)	NCBI Sequence Viewer
	EDL81174	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074486
	ENSRNOP00000074486.1

RefSeq Acc Id:

NP_001101464 ⟸ NM_001107994

- UniProtKB:

B0BMX8 (UniProtKB/TrEMBL), A6IUC3 (UniProtKB/TrEMBL), A0A0G2K863 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLN
VFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVG
YTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIV
DGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYVNGLDPEPLPLMDLCRRSVRLALGKERLGA
IPALPLPASLKAYLLYQ

hide sequence

RefSeq Acc Id:

XP_006239524 ⟸ XM_006239462

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLN
VFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVG
YTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIV
DGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYVNGLDPEPLPLMDLCRRSVRLALGKERLGA
IPALPLPASLKAYLLYQ

hide sequence

RefSeq Acc Id:	XP_008762480 ⟸ XM_008764258
- Peptide Label:	isoform X1
- UniProtKB:	B0BMX8 (UniProtKB/TrEMBL), A6IUC3 (UniProtKB/TrEMBL), A0A0G2K863 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQKVTGGIKTVDMRDPTYRPLKQELQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLN VFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVG YTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIV DGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYVNGLDPEPLPLMDLCRRSVRLALGKERLGA IPALPLPASLKAYLLYQ hide sequence

Ensembl Acc Id:

ENSRNOP00000074486 ⟸ ENSRNOT00000085251

Ensembl Acc Id:

ENSRNOP00000023287 ⟸ ENSRNOT00000023287

Protein Domains

B30.2/SPRY SOCS box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BMX8-F1-model_v2	AlphaFold	B0BMX8	1-273	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694277

Promoter ID:

EPDNEW_R4802

Type:

initiation region

Name:

Spsb1_1

Description:

splA/ryanodine receptor domain and SOCS box containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	166,926,631 - 166,926,691	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309319	AgrOrtholog
BioCyc Gene	G2FUF-39097	BioCyc
Ensembl Genes	ENSRNOG00000017212	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085251	ENTREZGENE
	ENSRNOT00000085251.3	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	SOCS box	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133644	IMAGE-MGC_LOAD
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	FBXO45-Fsn/SPSB_families	UniProtKB/TrEMBL
	SOCS_C	UniProtKB/TrEMBL
	SPRY_rcpt	UniProtKB/TrEMBL
KEGG Report	rno:313722	UniProtKB/TrEMBL
MGC_CLONE	MGC:187459	IMAGE-MGC_LOAD
NCBI Gene	313722	ENTREZGENE
PANTHER	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	UniProtKB/TrEMBL
	SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 1	UniProtKB/TrEMBL
Pfam	SOCS_box	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
PhenoGen	Spsb1	PhenoGen
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	SOCS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017212	RatGTEx
SMART	SOCS_box	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
UniProt	A0A0G2K863	ENTREZGENE, UniProtKB/TrEMBL
	A6IUC3	ENTREZGENE, UniProtKB/TrEMBL
	B0BMX8	ENTREZGENE
UniProt Secondary	B0BMX8	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Spsb1	splA/ryanodine receptor domain and SOCS box containing 1	Spsb1_predicted	splA/ryanodine receptor domain and SOCS box containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Spsb1_predicted	splA/ryanodine receptor domain and SOCS box containing 1 (predicted)	RGD1309319_predicted	similar to SPRY domain-containing SOCS box protein SSB-1 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309319_predicted	similar to SPRY domain-containing SOCS box protein SSB-1 (predicted)	LOC313722_predicted	similar to SPRY domain-containing SOCS box protein SSB-1 (predicted)	Symbol and Name status set to approved	1331353	APPROVED
2005-01-20	RGD1309319_predicted	similar to SPRY domain-containing SOCS box protein SSB-1 (predicted)	LOC313722_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC313722_predicted	similar to SPRY domain-containing SOCS box protein SSB-1 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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