Mrps2 (mitochondrial ribosomal protein S2) - Rat Genome Database

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Gene: Mrps2 (mitochondrial ribosomal protein S2) Rattus norvegicus
Analyze
Symbol: Mrps2
Name: mitochondrial ribosomal protein S2
RGD ID: 1309116
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial ribosome assembly. Predicted to be located in mitochondrial inner membrane and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 36. Orthologous to human MRPS2 (mitochondrial ribosomal protein S2); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 28S ribosomal protein S2, mitochondrial; LOC362094; small ribosomal subunit protein uS2m
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,201,037 - 32,204,317 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl332,198,641 - 32,204,892 (+)EnsemblGRCr8
mRatBN7.2311,803,044 - 11,806,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,801,310 - 11,806,313 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx314,875,455 - 14,878,688 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,460,405 - 23,463,638 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0321,714,851 - 21,718,084 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,051,695 - 7,056,726 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,051,695 - 7,058,521 (+)Ensemblrn6Rnor6.0
Rnor_5.0312,402,368 - 12,407,382 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.437,456,261 - 7,461,264 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera36,582,720 - 6,587,723 (+)NCBICelera
RGSC_v3.137,457,304 - 7,460,716 (+)NCBI
Cytogenetic Map3p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:25838379   PMID:29576219  


Genomics

Comparative Map Data
Mrps2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,201,037 - 32,204,317 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl332,198,641 - 32,204,892 (+)EnsemblGRCr8
mRatBN7.2311,803,044 - 11,806,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,801,310 - 11,806,313 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx314,875,455 - 14,878,688 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,460,405 - 23,463,638 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0321,714,851 - 21,718,084 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,051,695 - 7,056,726 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,051,695 - 7,058,521 (+)Ensemblrn6Rnor6.0
Rnor_5.0312,402,368 - 12,407,382 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.437,456,261 - 7,461,264 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera36,582,720 - 6,587,723 (+)NCBICelera
RGSC_v3.137,457,304 - 7,460,716 (+)NCBI
Cytogenetic Map3p12NCBI
MRPS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,499,965 - 135,504,673 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9135,499,984 - 135,504,673 (+)Ensemblhg38GRCh38
GRCh379138,391,811 - 138,396,519 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,532,375 - 137,536,340 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349135,618,498 - 135,622,462NCBI
Celera9108,909,613 - 108,913,649 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9107,854,303 - 107,858,345 (+)NCBIHuRef
CHM1_19138,541,056 - 138,545,098 (+)NCBICHM1_1
T2T-CHM13v2.09147,728,043 - 147,732,751 (+)NCBIT2T-CHM13v2.0
Mrps2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,355,963 - 28,361,189 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,358,078 - 28,361,190 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38228,465,951 - 28,471,177 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,468,066 - 28,471,178 (+)Ensemblmm10GRCm38
MGSCv37228,323,586 - 28,326,697 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36228,290,075 - 28,293,186 (+)NCBIMGSCv36mm8
Celera228,172,347 - 28,175,458 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Mrps2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,055,819 - 4,062,049 (+)Ensembl
ChiLan1.0NW_0049555134,055,814 - 4,058,507 (+)NCBIChiLan1.0ChiLan1.0
MRPS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,813,853 - 3,817,908 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,816,186 - 3,820,908 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,640,673 - 106,645,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,633,900 - 135,637,926 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,633,900 - 135,637,926 (+)EnsemblpanPan2panpan1.1
MRPS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1951,211,701 - 51,214,465 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl951,211,627 - 51,214,475 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha950,508,068 - 50,510,744 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0952,101,995 - 52,104,672 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl952,101,647 - 52,104,666 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1950,880,822 - 50,883,498 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0951,205,345 - 51,208,028 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,284,484 - 51,287,160 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrps2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,308,907 - 201,311,012 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366692,064,016 - 2,066,247 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366692,064,046 - 2,066,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21308,635,664 - 308,638,776 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,665,725 - 2,669,478 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl122,665,620 - 2,669,407 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660582,488,346 - 2,492,142 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247603,112,670 - 3,115,621 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrps2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v158,198,419 - 8,201,637 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrps2
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:88
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000013548
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH137060  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2311,805,969 - 11,806,150 (+)MAPPERmRatBN7.2
Rnor_6.037,056,355 - 7,056,535NCBIRnor6.0
Rnor_5.0312,407,028 - 12,407,208UniSTSRnor5.0
RGSC_v3.437,460,921 - 7,461,101UniSTSRGSC3.4
Celera36,587,380 - 6,587,560UniSTS
RH 3.4 Map319.2UniSTS
Cytogenetic Map3p12UniSTS
AI102331  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2311,805,079 - 11,805,242 (+)MAPPERmRatBN7.2
Rnor_6.037,055,465 - 7,055,627NCBIRnor6.0
Rnor_5.0312,406,138 - 12,406,300UniSTSRnor5.0
RGSC_v3.437,460,031 - 7,460,193UniSTSRGSC3.4
Celera36,586,490 - 6,586,652UniSTS
RH 3.4 Map321.8UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013548   ⟹   ENSRNOP00000013548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl332,201,077 - 32,204,064 (+)Ensembl
mRatBN7.2 Ensembl311,801,310 - 11,806,313 (+)Ensembl
Rnor_6.0 Ensembl37,051,695 - 7,056,698 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082883   ⟹   ENSRNOP00000071014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl37,053,528 - 7,058,521 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158733   ⟹   ENSRNOP00000099688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl332,198,641 - 32,204,892 (+)Ensembl
RefSeq Acc Id: NM_001108576   ⟹   NP_001102046
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8332,201,077 - 32,204,306 (+)NCBI
mRatBN7.2311,803,084 - 11,806,313 (+)NCBI
Rnor_6.037,051,695 - 7,056,698 (+)NCBI
Rnor_5.0312,402,368 - 12,407,382 (+)NCBI
RGSC_v3.437,456,261 - 7,461,264 (+)RGD
Celera36,582,720 - 6,587,723 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591879   ⟹   XP_017447368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8332,201,037 - 32,204,317 (+)NCBI
mRatBN7.2311,803,044 - 11,806,341 (+)NCBI
Rnor_6.037,053,476 - 7,056,726 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105366   ⟹   XP_038961294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8332,201,859 - 32,204,317 (+)NCBI
mRatBN7.2311,803,866 - 11,806,341 (+)NCBI
RefSeq Acc Id: NP_001102046   ⟸   NM_001108576
- UniProtKB: D3ZY44 (UniProtKB/TrEMBL),   A6JTN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447368   ⟸   XM_017591879
- Peptide Label: isoform X1
- UniProtKB: A6JTN4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071014   ⟸   ENSRNOT00000082883
Ensembl Acc Id: ENSRNOP00000013548   ⟸   ENSRNOT00000013548
RefSeq Acc Id: XP_038961294   ⟸   XM_039105366
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000099688   ⟸   ENSRNOT00000158733

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZY44-F1-model_v2 AlphaFold D3ZY44 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691951
Promoter ID:EPDNEW_R2457
Type:multiple initiation site
Name:Mrps2_1
Description:mitochondrial ribosomal protein S2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.037,053,502 - 7,053,562EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309116 AgrOrtholog
BioCyc Gene G2FUF-50281 BioCyc
Ensembl Genes ENSRNOG00000010164 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013548 ENTREZGENE
  ENSRNOT00000013548.8 UniProtKB/TrEMBL
  ENSRNOT00000158733.1 UniProtKB/TrEMBL
Gene3D-CATH Glucose-6-phosphate isomerase like protein, domain 1 UniProtKB/TrEMBL
InterPro Ribosomal_S2 UniProtKB/TrEMBL
  Ribosomal_S2_bac/mit/plastid UniProtKB/TrEMBL
  Ribosomal_S2_CS UniProtKB/TrEMBL
  Ribosomal_S2_flav_dom UniProtKB/TrEMBL
KEGG Report rno:362094 UniProtKB/TrEMBL
NCBI Gene 362094 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S2, MITOCHONDRIAL UniProtKB/TrEMBL
  Ribosom_S2_bac UniProtKB/TrEMBL
Pfam Ribosomal_S2 UniProtKB/TrEMBL
PhenoGen Mrps2 PhenoGen
PRINTS RIBOSOMALS2 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S2_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010164 RatGTEx
Superfamily-SCOP Ribosomal_S2 UniProtKB/TrEMBL
UniProt A0ABK0L579_RAT UniProtKB/TrEMBL
  A6JTN4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZY44 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mrps2  mitochondrial ribosomal protein S2   Mrps2_predicted  mitochondrial ribosomal protein S2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrps2_predicted  mitochondrial ribosomal protein S2 (predicted)      Symbol and Name status set to approved 70820 APPROVED