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Gene: Slc9c1 (solute carrier family 9 member C1) Rattus norvegicus

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Symbol:

Slc9c1

Name:

solute carrier family 9 member C1

RGD ID:

1309075

Description:

Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within flagellated sperm motility. Predicted to be located in motile cilium. Predicted to be active in plasma membrane. Orthologous to human SLC9C1 (solute carrier family 9 member C1); INTERACTS WITH trichloroethene; 1,2-dichloroethane (ortholog); 2-hydroxypropanoic acid (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

gene model 610, (NCBI); Gm610; LOC288117; Slc9a10; sodium/hydrogen exchanger 10; solute carrier family 9, member 10; solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1; sperm-specific sodium proton exchanger

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	68,674,380 - 68,740,874 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	68,674,385 - 68,740,874 (-)	Ensembl				GRCr8
mRatBN7.2	11	55,211,774 - 55,278,285 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	55,211,792 - 55,278,285 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	63,986,808 - 64,053,702 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	56,648,671 - 56,715,553 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	55,754,377 - 55,821,222 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	60,184,953 - 60,251,458 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	60,184,961 - 60,251,428 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	64,285,570 - 64,350,871 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	56,702,554 - 56,769,394 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	54,735,652 - 54,802,154 (-)	NCBI		Celera
RGSC_v3.1	11	56,760,142 - 56,826,983 (-)	NCBI
Cytogenetic Map	11	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2-hydroxypropanoic acid (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

chlorpyrifos (ISO)

permethrin (ISO)

rac-lactic acid (ISO)

trichloroethene (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (ISO)

monoatomic cation transport (IEA)

monoatomic ion transport (IEA)

potassium ion transmembrane transport (IBA)

proton transmembrane transport (IEA)

regulation of intracellular pH (IBA)

sodium ion import across plasma membrane (IBA)

sodium ion transmembrane transport (IEA)

sodium ion transport (IEA)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

motile cilium (IEA,ISO)

plasma membrane (IBA)

Molecular Function

antiporter activity (IEA)

monoatomic ion channel activity (IEA)

potassium:proton antiporter activity (IBA)

protein binding (ISO)

sodium:proton antiporter activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12783626	PMID:14634667

Genomics

Comparative Map Data

Slc9c1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	68,674,380 - 68,740,874 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	68,674,385 - 68,740,874 (-)	Ensembl				GRCr8
mRatBN7.2	11	55,211,774 - 55,278,285 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	55,211,792 - 55,278,285 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	63,986,808 - 64,053,702 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	56,648,671 - 56,715,553 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	55,754,377 - 55,821,222 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	60,184,953 - 60,251,458 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	60,184,961 - 60,251,428 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	64,285,570 - 64,350,871 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	56,702,554 - 56,769,394 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	54,735,652 - 54,802,154 (-)	NCBI		Celera
RGSC_v3.1	11	56,760,142 - 56,826,983 (-)	NCBI
Cytogenetic Map	11	q21	NCBI

SLC9C1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	112,140,898 - 112,294,216 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	112,140,898 - 112,294,227 (-)	Ensembl			hg38	GRCh38
GRCh37	3	111,859,745 - 112,013,063 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	113,342,442 - 113,495,764 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	113,342,442 - 113,495,764	NCBI
Celera	3	110,258,818 - 110,421,777 (-)	NCBI		Celera
Cytogenetic Map	3	q13.2	NCBI
HuRef	3	109,234,451 - 109,397,162 (-)	NCBI		HuRef
CHM1_1	3	111,823,766 - 111,977,142 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	114,862,010 - 115,015,274 (-)	NCBI		T2T-CHM13v2.0

Slc9c1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	45,355,629 - 45,427,364 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	45,355,672 - 45,427,364 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	45,535,266 - 45,607,001 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	45,535,309 - 45,607,001 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	45,535,422 - 45,607,114 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	45,454,641 - 45,526,333 (+)	NCBI		MGSCv36	mm8
Celera	16	45,866,205 - 45,982,308 (+)	NCBI		Celera
Cytogenetic Map	16	B5	NCBI
cM Map	16	29.53	NCBI

Slc9c1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	12,541,286 - 12,644,604 (-)	Ensembl
ChiLan1.0	NW_004955427	12,541,396 - 12,644,543 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC9C1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	110,151,613 - 110,288,799 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	110,156,393 - 110,293,579 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	109,296,225 - 109,435,341 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	116,219,881 - 116,358,397 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	116,219,887 - 116,358,397 (-)	Ensembl			panPan2	panpan1.1

SLC9C1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	16,762,824 - 16,844,780 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	16,762,837 - 16,845,003 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	16,866,751 - 16,948,860 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	17,009,322 - 17,091,214 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	17,009,335 - 17,091,186 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	16,812,599 - 16,894,749 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	16,858,459 - 16,941,889 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	17,409,076 - 17,491,071 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc9c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	137,568,862 - 137,647,058 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936834	942,457 - 1,004,226 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936834	939,319 - 1,004,163 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC9C1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	147,517,663 - 147,613,468 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	147,517,985 - 147,612,667 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	157,110,613 - 157,154,008 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC9C1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	68,528,699 - 68,648,936 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	68,516,643 - 68,637,366 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	97,838,764 - 97,953,966 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc9c1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	36,291,303 - 36,430,572 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	36,291,310 - 36,430,429 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc9c1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	30,264,493 - 30,335,827 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc9c1
498 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	123
Count of miRNA genes:	97
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000040908
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	46443168	91443168	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	58931822	92356038	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
13	2	17	23	18	8	11	8	2	39	14	12	2	43	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BK001327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000040908 ⟹ ENSRNOP00000045235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	55,217,545 - 55,278,285 (-)	Ensembl
Rnor_6.0 Ensembl	11	60,190,782 - 60,249,165 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080148 ⟹ ENSRNOP00000074847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	68,674,385 - 68,740,874 (-)	Ensembl
mRatBN7.2 Ensembl	11	55,211,792 - 55,278,285 (-)	Ensembl
Rnor_6.0 Ensembl	11	60,184,964 - 60,251,415 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086602 ⟹ ENSRNOP00000072593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	68,674,535 - 68,740,874 (-)	Ensembl
mRatBN7.2 Ensembl	11	55,211,942 - 55,278,285 (-)	Ensembl
Rnor_6.0 Ensembl	11	60,184,961 - 60,251,428 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	11	60,232,871 - 60,233,519 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114657 ⟹ ENSRNOP00000082098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	55,245,463 - 55,278,285 (-)	Ensembl

RefSeq Acc Id:

NM_001008762 ⟹ NP_001008762

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	68,674,385 - 68,740,874 (-)	NCBI
mRatBN7.2	11	55,211,792 - 55,278,285 (-)	NCBI
Rnor_6.0	11	60,184,973 - 60,251,458 (-)	NCBI
Rnor_5.0	11	64,285,570 - 64,350,871 (-)	NCBI
Celera	11	54,735,652 - 54,802,154 (-)	NCBI

Sequence:

show sequence

GGGCTTGGAATAAGTAACTGTCAGTGAGGTTGCAGTTGGTTTTGGACAGTTCTGGAGTGAGAGG
AAGTTCCTGGCCTCCACTTCTCACATTCTCTAGGACACTCCTGTGCCCTGGATGAAGGGCATTA
GGAAGACACCAAGAAGAAAAGTCCTATTCCCTTTGATCCCCTGTGAGTTTTTCAGAGACACAGA
GTTTGAGACGCTGACTGTAATTAAATACGGGAATGGAAGAAGTTTTTGAGAATCTAACTACAAC
CCACAATGTCAAACTGAGTAATGCATGGCTGGATCTTCTCAAAAGCGTGTTTTTGAGCACTCCC
CAGGACCTCCCTGAAATCATCTTGATACTATCTTTGATCTGTACGATTGGAGCATTTTTGAACA
TGCATCTGAAGGATTTTCCAATTCCTCTTCCTGTGATACTATTTTTAATTGGATGCTGTTTTGA
AATTCTGAGTTTTGCATCTACTCAGATCCAGTTATATGCAGATGCCATACAGTGGATGGATCCT
GACATGTTTTTTGGGATATTTACACCAGTAATTATCTTTAATGTTGCATTTGACATGGATATAT
ACATGCTTCAAAAGTTATTTTGGCAGATATTATTAATTACAATTCCTGGATTTATGATTAATTA
CACCTTAATACTGTGGTATCTGCAGTCTGTGAATAAATTATCTTTAAAGACCATCCCCTGGCTA
CTGTTTTCAGCTGTGCTTATCAGTTCAGATCCTATGCTTACTTCAGCCTCCATAAGAGACCTTG
GTCTTTCCAGAAGCCTCACAAATTTAATTAACGGAGAGAGTCTACTGACCTCAGTGATATCCTT
AATTATATATAGTGCTGTTGTGCAGATCAGTTTCAAGTCAAAGCATATGAACCATACCCTAGCC
CATAAGGTCATGTCCACAGCTTGGTCATATCTTGTGGAAAGTTTCATCACTGGAATCCTAATTA
CAAAAGCGATTCAGTTATGGATGGCTACCATCTTTGGTGATGACGTCAACCACATCACGCTCAT
CTTCTCAGTTCTATACCTCATCTTCTATGTTTGTGAGCTAATTGGAATGTCTGGAATATTTACT
CTGGCCACCATAGGACTTTTTCTAAATTCTACAAGTTTTAAACCAGGAGTTGAAGCATTTCTCC
TCGAATTCTGGAACTGCCTGTCCTTTATTGGTTTCCTTATGGTGTTCACTTTCATTGGACTTCT
AATCCCTGCACACACATATTTATATATATCATTTTCTGATGTGTATTACTCATTAAATATCTAC
TTCACGCTGATTGTTTTAAGGCTTCTGGTCTTTCTGCTAATGAGCCCCATTTTGTCTCGACTTG
GTCACGGGTTCAGCTGGCGCTGGGCGTTCATCATGGTCTGGAGTGAAATGAAAGGAACACCGAA
CATAAATATGGCCCTTCTGCTTGCCTACTCGGACGTTTCTCTTGGTTCCGAGAGGGAAAGATCT
CAAATATTATTCCATGGCGTGTCAGTATGTGTAATCACCCTGATTGTCAATAGATTTATTTTGC
CAATGGCAGTAATTAAACTAGGTCTTCGTGATGTCACATCAACAAAATATAAATCGGTTTATTA
TACATTCCAGCACTTTCAAGAGCTAACCAAATCCACAGCCATGGCACTCAAATTTGACAAAGAT
CTTGCTAACGCTGACTGGAACATGGTTGACAAGGCGATTATACTTCAAAATCCATATGCTTTAA
ACCAAGAAGAAACAACGGAACATCAGAAGGTGAAATGTCCTGATTGCAACAAGGAAATAGATGA
GACCCTTAACATTGAAGCCATGGAGTTGGCCAACAGGCGTCTCCTGTCAGCGCAAATAGCAAGC
TACCAACGACAGTACAGGAATGAGATTCTGTCCCAGAGTGCAATGCAAGTGTTGGTAGGCGCGG
CCGGAAGCTTTGGTGAGAAGAAGGGAGAATATATGAGTCCTGAGAACATAAAGAATTATTCAGA
AAGCAAAAAACTCCTCTCCTTTCTTAGAAAATTACTACTCAACTGGGTATATAATACTAAAAAA
GATAAAGGGGTTCCATCAAGATACATGTTTCTTCATGCATGCCATAGCATAGTCTTCACAAATG
AATTTGAATACACTGGATACATCGCTGTATTAATGAACACATATCCGATGATAATCTGTTGGAT
TTCCCGACTAAAAGACATCTATCAATATGAGATAAAATGTGCTAACTACTATTTTCTTACATTT
TATATTCTAGAGGCTCTACTTAAGGTGGCAGCAATGAGGAAGGAATTTTTTTCACACACCTGGC
TCCTGTTTGAGCTCGGGATTACCTTGGTCGGCATCCTAGATATAATACTTATCGAAACAGACTC
CATTAGTTACAAATTTGACTTAACTGAGACTGTGGTCTTCATGAACGTGGTTCGACTCCTTCGT
ATACTGCGCATCTTGAAGCTTATAACACCAAAATTGCTGCAAGTAATAGACAAAAGGATGAGCC
AGCAGATATCCTTCCGGTATGCTATACTAAAAGGCTACGTCCAAGGGGAAATGGATGTACTGAA
TATAATTGATCAGATTGCAAGTTCCAAACAGGCTAAACAGATATTGTTAAAGCGAGTAATAAGG
AATATGGATCATGCTATGAAAGAGCTGGGCTACCTAGAGTATGATCACCCAGAAATCGCTGTCA
CTATGAAAACCAAGGAGGAGGTTAATGTGATGCTCAATATGGCCAGAGAAATTGTCAAGGCTTT
CAGGTCCAAAGGAATTATACATAAGGTGGAAGGCGCTGAGATCAACAAGTTAATCATGGCCAAA
AAGAAACAAGTGCTTGAGCTGCAGTCTGTTATCCAGCCACTTAATGTTGAAGAAGCCCCATACT
ATATCCCATGGCTCAGTGAAGATCCTGAAGCCATAAGCTTTATTCAGGAAAAAGCAAAAGTTGT
GACATTTGACTGCGGAAATAACATATTTGAGGAAGGCGACGAACCAGAAGGAATCTATGTAATA
ATTTCGGGCATGGTAAAGCTTAAAAGGTCAAAGCCACACCTGGAGATGGATAGAGTGTCCTCAG
AGTCAGAGGTTGCTCAGACTAGAAGTTATACACTGCCTCACACAGAATATCTGCTCAGCGGGGA
AATAATAGGAGAGTTAAACTGTTTGACTAAAGAACGGATGCAATATTCTGCCACCTGCAAAACT
GTTGTGGAGACGTATTTTATTCCCATTAGCCACTTGTATGAAGGCTTTGAAAAAAAATACCCTA
ACATGAAATATAAAATGTGGCAAAAAATCGGACTTGCCATTACTGCCCAAAAGATCCGGGAAAA
CTTATCTTTTGAGGACTGGAACTACAAGATGCAGTTGAAACTCTGCAATGTCTTCGTAAGGGAC
ATACCCAAGACCACAAAAACTGACATCTATGATGAAACGGTAACCCATGTTGTCCTCATCCATG
GATCTGCAGAAGACTGCCAGTTGCGAAAAATTTATAAGGCACCTTTCCTAATTCCCGTGACATG
CCATCAGATACAAGGCTTAGAAGAGTTCACAAAAGTCATGATTATTCAAACTTCCGTTGCTGTG
AGAAAATTCAGGTGGAATGTAAAAAAGTACAACCCACCTCGAAGGATTTCAATGAAACCAGATT
CTACAGAATCACTTGAAACATTAAATGAAAGTTCTGAAGATGATGAGGATAAAAAAGAGAATGA
AGAAAATGAGGAATATTTGGAAGATATTATTGACATCTCAAGTGTCTCCAAGAAATAACCTGGA
AAGAAAGTTTAGTCAGTCGCCTGAGCTTCTCACCATGGCAATGAAAACATATATTTATGGAGAT
AGAGACAAGCCAAAGTTTATATGCCTCTTGTGTGATAATGTGAATTAAAGTACCTTGCACTA

hide sequence

RefSeq Acc Id:

XM_008768722 ⟹ XP_008766944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	68,674,380 - 68,738,768 (-)	NCBI
mRatBN7.2	11	55,211,774 - 55,276,179 (-)	NCBI
Rnor_6.0	11	60,184,953 - 60,249,352 (-)	NCBI

Sequence:

show sequence

GAAGGGCATTAGGAAGACACCAAGAAGAAAAGTCCTATTCCCTTTGATCCCCTGTGAGTTTTTC
AGAGACACAGAGTTTGAGACGCTGACTGTAATTAAATACGGGAATGGAAGAAGTTTTTGAGAAT
CTAACTACAACCCACAATGTCAAACTGAGTAATGCATGGCTGGATCTTCTCAAAAGCGTGTTTT
TGAGCACTCCCCAGGACCTCCCTGAAATCATCTTGATACTATCTTTGATCTGTACGATTGGAGC
ATTTTTGAACATGCATCTGAAGGATTTTCCAATTCCTCTTCCTGTGATACTATTTTTAATTGGA
TGCTGTTTTGAAATTCTGAGTTTTGCATCTACTCAGATCCAGTTATATGCAGATGCCATACAGT
GGATGGATCCTGACATGTTTTTTGGGATATTTACACCAGTAATTATCTTTAATGTTGCATTTGA
CATGGATATATACATGCTTCAAAAGTTATTTTGGCAGATATTATTAATTACAATTCCTGGATTT
ATGATTAATTACACCTTAATACTGTGGTATCTGCAGTCTGTGAATAAATTATCTTTAAAGACCA
TCCCCTGGCTACTGTTTTCAGCTGTGCTTATCAGTTCAGATCCTATGCTTACTTCAGCCTCCAT
AAGAGACCTTGGTCTTTCCAGAAGCCTCACAAATTTAATTAACGGAGAGAGTCTACTGACCTCA
GTGATATCCTTAATTATATATAGTGCTGTTGTGCAGATCAGTTTCAAGTCAAAGCATATGAACC
ATACCCTAGCCCATAAGGTCATGTCCACAGCTTGGTCATATCTTGTGGAAAGTTTCATCACTGG
AATCCTAATTACAAAAGCGATTCAGTTATGGATGGCTACCATCTTTGGTGATGACGTCAACCAC
ATCACGCTCATCTTCTCAGTTCTATACCTCATCTTCTATGTTTGTGAGCTAATTGGAATGTCTG
GAATATTTACTCTGGCCACCATAGGACTTTTTCTAAATTCTACAAGTTTTAAACCAGGAGTTGA
AGCATTTCTCCTCGAATTCTGGAACTGCCTGTCCTTTATTGGTTTCCTTATGGTGTTCACTTTC
ATTGGACTTCTAATCCCTGCACACACATATTTATATATATCATTTTCTGATGTGTATTACTCAT
TAAATATCTACTTCACGCTGATTGTTTTAAGGCTTCTGGTCTTTCTGCTAATGAGCCCCATTTT
GTCTCGACTTGGTCACGGGTTCAGCTGGCGCTGGGCGTTCATCATGGTCTGGAGTGAAATGAAA
GGAACACCGAACATAAATATGGCCCTTCTGCTTGCCTACTCGGACGTTTCTCTTGGTTCCGAGA
GGGAAAGATCTCAAATATTATTCCATGGCGTGTCAGTATGTGTAATCACCCTGATTGTCAATAG
ATTTATTTTGCCAATGGCAGTAATTAAACTAGGTCTTCGTGATGTCACATCAACAAAATATAAA
TCGGTTTATTATACATTCCAGCACTTTCAAGAGCTAACCAAATCCACAGCCATGGCACTCAAAT
TTGACAAAGATCTTGCTAACGCTGACTGGAACATGGTTGACAAGGCGATTATACTTCAAAATCC
ATATGCTTTAAACCAAGAAGAAACAACGGAACATCAGAAGGTGAAATGTCCTGATTGCAACAAG
GAAATAGATGAGACCCTTAACATTGAAGCCATGGAGTTGGCCAACAGGCGTCTCCTGTCAGCGC
AAATAGCAAGCTACCAACGACAGTACAGGAATGAGATTCTGTCCCAGAGTGCAATGCAAGTGTT
GGTAGGCGCGGCCGGAAGCTTTGGTGAGAAGAAGGGAGAATATATGAGTCCTGAGAACATAAAG
AATTATTCAGAAAGCAAAAAACTCCTCTCCTTTCTTAGAAAATTACTACTCAACTGGGTATATA
ATACTAAAAAAGATAAAGGGGTTCCATCAAGATACATGTTTCTTCATGCATGCCATAGCATAGT
CTTCACAAATGAATTTGAATACACTGGATACATCGCTGTATTAATGAACACATATCCGATGATA
ATCTGTTGGATTTCCCGACTAAAAGACATCTATCAATATGAGATAAAATGTGCTAACTACTATT
TTCTTACATTTTATATTCTAGAGGCTCTACTTAAGGTGGCAGCAATGAGGAAGGAATTTTTTTC
ACACACCTGGCTCCTGTTTGAGCTCGGGATTACCTTGGTCGGCATCCTAGATATAATACTTATC
GAAACAGACTCCATTAGTTACAAATTTGACTTAACTGAGACTGTGGTCTTCATGAACGTGGTTC
GACTCCTTCGTATACTGCGCATCTTGAAGCTTATAACACCAAAATTGCTGCAAGTAATAGACAA
AAGGATGAGCCAGCAGATATCCTTCCGGTATGCTATACTAAAAGGCTACGTCCAAGGGGAAATG
GATGTACTGAATATAATTGATCAGATTGCAAGTTCCAAACAGGCTAAACAGATATTGTTAAAGC
GAGTAATAAGGAATATGGATCATGCTATGAAAGAGCTGGGCTACCTAGAGTATGATCACCCAGA
AATCGCTGTCACTATGAAAACCAAGGAGGAGGTTAATGTGATGCTCAATATGGCCAGAGAAATT
GTCAAGGCTTTCAGGTCCAAAGGAATTATACATAAGGTGGAAGGCGCTGAGATCAACAAGTTAA
TCATGGCCAAAAAGAAACAAGTGCTTGAGCTGCAGTCTGTTATCCAGCCACTTAATGTTGAAGA
AGCCCCATACTATATCCCATGGCTCAGTGAAGATCCTGAAGCCATAAGCTTTATTCAGGAAAAA
GCAAAAGTTGTGACATTTGACTGCGGAAATAACATATTTGAGGAAGGCGACGAACCAGAAGGAA
TCTATGTAATAATTTCGGGCATGGTAAAGCTTAAAAGGTCAAAGCCACACCTGGAGATGGATAG
AGTGTCCTCAGAGTCAGAGGTTGCTCAGACTAGAAGTTATACACTGCCTCACACAGAATATCTG
CTCAGCGGGGAAATAATAGGAGAGTTAAACTGTTTGACTAAAGAACGGATGCAATATTCTGCCA
CCTGCAAAACTGTTGTGGAGACGTATTTTATTCCCATTAGCCACTTGTATGAAGGCTTTGAAAA
AAAATACCCTAACATGAAATATAAAATGTGGCAAAAAATCGGACTTGCCATTACTGCCCAAAAG
ATCCGGGAAAACTTATCTTTTGAGGACTGGAACTACAAGATGCAGTTGAAACTCTGCAATGTCT
TCGTAAGGGACATACCCAAGACCACAAAAACTGACATCTATGATGAAACGGTAACCCATGTTGT
CCTCATCCATGGATCTGCAGAAGACTGCCAGTTGCGAAAAATTTATAAGGCACCTTTCCTAATT
CCCGTGACATGCCATCAGATACAAGGCTTAGAAGAGTTCACAAAAGTCATGATTATTCAAACTT
CCGTTGCTGTGAGAAAATTCAGGTGGAATGTAAAAAAGTACAACCCACCTCGAAGGATTTCAAT
GAAACCAGATTCTACAGAATCACTTGAAACATTAAATGAAAGTTCTGAAGATGATGAGGATAAA
AAAGAGAATGAAGAAAATGAGGAATATTTGGAAGATATTATTGACATCTCAAGTGTCTCCAAGA
AATAACCTGGAAAGAAAGTTTAGTCAGTCGCCTGAGCTTCTCACCATGGCAATGAAAACATATA
TTTATGGAGATAGAGACAAGCCAAAGTTTATATGCCTCTTGTGTGATAATGTGAATTAAAGTAC
CTTGCACTAGTCAACCAACTCTACAAATG

hide sequence

RefSeq Acc Id:

XM_017597925 ⟹ XP_017453414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	68,674,380 - 68,740,868 (-)	NCBI
mRatBN7.2	11	55,211,774 - 55,278,279 (-)	NCBI
Rnor_6.0	11	60,184,953 - 60,251,452 (-)	NCBI

Sequence:

show sequence

GGAATAAGTAACTGTCAGTGAGGTTGCAGTTGGTTTTGGACAGTTCTGGAGTGAGAGGAAGTTC
CTGGCCTCCACTTCTCACATTCTCTAGGACACTCCTGTGCCCTGGATGCTTTCCAAGTGATTCA
TGCTACTGCTGAGATGGAGTCTTACTGGACAGACATAGCTGAGAGCCGTTGCTCTATTTCCAGA
TCAACCTCAAGCTCTTGTTTTCTTTTGTGATTTTTTTTTTATTATTTTGAGAAGGGCATTAGGA
AGACACCAAGAAGAAAAGTCCTATTCCCTTTGATCCCCTGTGAGTTTTTCAGAGACACAGAGTT
TGAGACGCTGACTGTAATTAAATACGGGAATGGAAGAAGTTTTTGAGAATCTAACTACAACCCA
CAATGTCAAACTGAGTAATGCATGGCTGGATCTTCTCAAAAGCGTGTTTTTGAGCACTCCCCAG
GACCTCCCTGAAATCATCTTGATACTATCTTTGATCTGTACGATTGGAGCATTTTTGAACATGC
ATCTGAAGGATTTTCCAATTCCTCTTCCTGTGATACTATTTTTAATTGGATGCTGTTTTGAAAT
TCTGAGTTTTGCATCTACTCAGATCCAGTTATATGCAGATGCCATACAGTGGATGGATCCTGAC
ATGTTTTTTGGGATATTTACACCAGTAATTATCTTTAATGTTGCATTTGACATGGATATATACA
TGCTTCAAAAGTTATTTTGGCAGATATTATTAATTACAATTCCTGGATTTATGATTAATTACAC
CTTAATACTGTGGTATCTGCAGTCTGTGAATAAATTATCTTTAAAGACCATCCCCTGGCTACTG
TTTTCAGCTGTGCTTATCAGTTCAGATCCTATGCTTACTTCAGCCTCCATAAGAGACCTTGGTC
TTTCCAGAAGCCTCACAAATTTAATTAACGGAGAGAGTCTACTGACCTCAGTGATATCCTTAAT
TATATATAGTGCTGTTGTGCAGATCAGTTTCAAGTCAAAGCATATGAACCATACCCTAGCCCAT
AAGGTCATGTCCACAGCTTGGTCATATCTTGTGGAAAGTTTCATCACTGGAATCCTAATTACAA
AAGCGATTCAGTTATGGATGGCTACCATCTTTGGTGATGACGTCAACCACATCACGCTCATCTT
CTCAGTTCTATACCTCATCTTCTATGTTTGTGAGCTAATTGGAATGTCTGGAATATTTACTCTG
GCCACCATAGGACTTTTTCTAAATTCTACAAGTTTTAAACCAGGAGTTGAAGCATTTCTCCTCG
AATTCTGGAACTGCCTGTCCTTTATTGGTTTCCTTATGGTGTTCACTTTCATTGGACTTCTAAT
CCCTGCACACACATATTTATATATATCATTTTCTGATGTGTATTACTCATTAAATATCTACTTC
ACGCTGATTGTTTTAAGGCTTCTGGTCTTTCTGCTAATGAGCCCCATTTTGTCTCGACTTGGTC
ACGGGTTCAGCTGGCGCTGGGCGTTCATCATGGTCTGGAGTGAAATGAAAGGAACACCGAACAT
AAATATGGCCCTTCTGCTTGCCTACTCGGACGTTTCTCTTGGTTCCGAGAGGGAAAGATCTCAA
ATATTATTCCATGGCGTGTCAGTATGTGTAATCACCCTGATTGTCAATAGATTTATTTTGCCAA
TGGCAGTAATTAAACTAGGTCTTCGTGATGTCACATCAACAAAATATAAATCGGTTTATTATAC
ATTCCAGCACTTTCAAGAGCTAACCAAATCCACAGCCATGGCACTCAAATTTGACAAAGATCTT
GCTAACGCTGACTGGAACATGGTTGACAAGGCGATTATACTTCAAAATCCATATGCTTTAAACC
AAGAAGAAACAACGGAACATCAGAAGGTGAAATGTCCTGATTGCAACAAGGAAATAGATGAGAC
CCTTAACATTGAAGCCATGGAGTTGGCCAACAGGCGTCTCCTGTCAGCGCAAATAGCAAGCTAC
CAACGACAGTACAGGAATGAGATTCTGTCCCAGAGTGCAATGCAAGTGTTGGTAGGCGCGGCCG
GAAGCTTTGGTGAGAAGAAGGGAGAATATATGAGTCCTGAGAACATAAAGAATTATTCAGAAAG
CAAAAAACTCCTCTCCTTTCTTAGAAAATTACTACTCAACTGGGTATATAATACTAAAAAAGAT
AAAGGGGTTCCATCAAGATACATGTTTCTTCATGCATGCCATAGCATAGTCTTCACAAATGAAT
TTGAATACACTGGATACATCGCTGTATTAATGAACACATATCCGATGATAATCTGTTGGATTTC
CCGACTAAAAGACATCTATCAATATGAGATAAAATGTGCTAACTACTATTTTCTTACATTTTAT
ATTCTAGAGGCTCTACTTAAGGTGGCAGCAATGAGGAAGGAATTTTTTTCACACACCTGGCTCC
TGTTTGAGCTCGGGATTACCTTGGTCGGCATCCTAGATATAATACTTATCGAAACAGACTCCAT
TAGTTACAAATTTGACTTAACTGAGACTGTGGTCTTCATGAACGTGGTTCGACTCCTTCGTATA
CTGCGCATCTTGAAGCTTATAACACCAAAATTGCTGCAAGTAATAGACAAAAGGATGAGCCAGC
AGATATCCTTCCGGTATGCTATACTAAAAGGCTACGTCCAAGGGGAAATGGATGTACTGAATAT
AATTGATCAGATTGCAAGTTCCAAACAGGCTAAACAGATATTGTTAAAGCGAGTAATAAGGAAT
ATGGATCATGCTATGAAAGAGCTGGGCTACCTAGAGTATGATCACCCAGAAATCGCTGTCACTA
TGAAAACCAAGGAGGAGGTTAATGTGATGCTCAATATGGCCAGAGAAATTGTCAAGGCTTTCAG
GTCCAAAGGAATTATACATAAGGTGGAAGGCGCTGAGATCAACAAGTTAATCATGGCCAAAAAG
AAACAAGTGCTTGAGCTGCAGTCTGTTATCCAGCCACTTAATGTTGAAGAAGCCCCATACTATA
TCCCATGGCTCAGTGAAGATCCTGAAGCCATAAGCTTTATTCAGGAAAAAGCAAAAGTTGTGAC
ATTTGACTGCGGAAATAACATATTTGAGGAAGGCGACGAACCAGAAGGAATCTATGTAATAATT
TCGGGCATGGTAAAGCTTAAAAGGTCAAAGCCACACCTGGAGATGGATAGAGTGTCCTCAGAGT
CAGAGGTTGCTCAGACTAGAAGTTATACACTGCCTCACACAGAATATCTGCTCAGCGGGGAAAT
AATAGGAGAGTTAAACTGTTTGACTAAAGAACGGATGCAATATTCTGCCACCTGCAAAACTGTT
GTGGAGACGTATTTTATTCCCATTAGCCACTTGTATGAAGGCTTTGAAAAAAAATACCCTAACA
TGAAATATAAAATGTGGCAAAAAATCGGACTTGCCATTACTGCCCAAAAGATCCGGGAAAACTT
ATCTTTTGAGGACTGGAACTACAAGATGCAGTTGAAACTCTGCAATGTCTTCGTAAGGGACATA
CCCAAGACCACAAAAACTGACATCTATGATGAAACGGTAACCCATGTTGTCCTCATCCATGGAT
CTGCAGAAGACTGCCAGTTGCGAAAAATTTATAAGGCACCTTTCCTAATTCCCGTGACATGCCA
TCAGATACAAGGCTTAGAAGAGTTCACAAAAGTCATGATTATTCAAACTTCCGTTGCTGTGAGA
AAATTCAGGTGGAATGTAAAAAAGTACAACCCACCTCGAAGGATTTCAATGAAACCAGATTCTA
CAGAATCACTTGAAACATTAAATGAAAGTTCTGAAGATGATGAGGATAAAAAAGAGAATGAAGA
AAATGAGGAATATTTGGAAGATATTATTGACATCTCAAGTGTCTCCAAGAAATAACCTGGAAAG
AAAGTTTAGTCAGTCGCCTGAGCTTCTCACCATGGCAATGAAAACATATATTTATGGAGATAGA
GACAAGCCAAAGTTTATATGCCTCTTGTGTGATAATGTGAATTAAAGTACCTTGCACTAGTCAA
CCAACTCTACAAATG

hide sequence

RefSeq Acc Id:

XM_017597926 ⟹ XP_017453415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	68,674,380 - 68,740,868 (-)	NCBI
mRatBN7.2	11	55,211,774 - 55,278,161 (-)	NCBI
Rnor_6.0	11	60,184,953 - 60,251,334 (-)	NCBI

Sequence:

show sequence

CCTCCTGTTGTTTCTCTTTCTGGAAGTTGACCTTTCCATCTGGTGCTTGTTCTCTGGACCGCCT
CTGTTCGAAGATCAAAGGAAGCCACTGTTTAGCTTAGAGTCTTGGCTCGCACTTGTGCTTTCTC
ATTACAACCAAAGACTCTTTCCAAGTGATTCATGCTACTGCTGAGATGGAGTCTTACTGGACAG
ACATAGCTGAGAGCCGTTGCTCTATTTCCAGATCAACCTCAAGCTCTTGTTTTCTTTTGTGATT
TTTTTTTTATTATTTTGAGAAGGGCATTAGGAAGACACCAAGAAGAAAAGTCCTATTCCCTTTG
ATCCCCTGTGAGTTTTTCAGAGACACAGAGTTTGAGACGCTGACTGTAATTAAATACGGGAATG
GAAGAAGTTTTTGAGAATCTAACTACAACCCACAATGTCAAACTGAGTAATGCATGGCTGGATC
TTCTCAAAAGCGTGTTTTTGAGCACTCCCCAGGACCTCCCTGAAATCATCTTGATACTATCTTT
GATCTGTACGATTGGAGCATTTTTGAACATGCATCTGAAGGATTTTCCAATTCCTCTTCCTGTG
ATACTATTTTTAATTGGATGCTGTTTTGAAATTCTGAGTTTTGCATCTACTCAGATCCAGTTAT
ATGCAGATGCCATACAGTGGATGGATCCTGACATGTTTTTTGGGATATTTACACCAGTAATTAT
CTTTAATGTTGCATTTGACATGGATATATACATGCTTCAAAAGTTATTTTGGCAGATATTATTA
ATTACAATTCCTGGATTTATGATTAATTACACCTTAATACTGTGGTATCTGCAGTCTGTGAATA
AATTATCTTTAAAGACCATCCCCTGGCTACTGTTTTCAGCTGTGCTTATCAGTTCAGATCCTAT
GCTTACTTCAGCCTCCATAAGAGACCTTGGTCTTTCCAGAAGCCTCACAAATTTAATTAACGGA
GAGAGTCTACTGACCTCAGTGATATCCTTAATTATATATAGTGCTGTTGTGCAGATCAGTTTCA
AGTCAAAGCATATGAACCATACCCTAGCCCATAAGGTCATGTCCACAGCTTGGTCATATCTTGT
GGAAAGTTTCATCACTGGAATCCTAATTACAAAAGCGATTCAGTTATGGATGGCTACCATCTTT
GGTGATGACGTCAACCACATCACGCTCATCTTCTCAGTTCTATACCTCATCTTCTATGTTTGTG
AGCTAATTGGAATGTCTGGAATATTTACTCTGGCCACCATAGGACTTTTTCTAAATTCTACAAG
TTTTAAACCAGGAGTTGAAGCATTTCTCCTCGAATTCTGGAACTGCCTGTCCTTTATTGGTTTC
CTTATGGTGTTCACTTTCATTGGACTTCTAATCCCTGCACACACATATTTATATATATCATTTT
CTGATGTGTATTACTCATTAAATATCTACTTCACGCTGATTGTTTTAAGGCTTCTGGTCTTTCT
GCTAATGAGCCCCATTTTGTCTCGACTTGGTCACGGGTTCAGCTGGCGCTGGGCGTTCATCATG
GTCTGGAGTGAAATGAAAGGAACACCGAACATAAATATGGCCCTTCTGCTTGCCTACTCGGACG
TTTCTCTTGGTTCCGAGAGGGAAAGATCTCAAATATTATTCCATGGCGTGTCAGTATGTGTAAT
CACCCTGATTGTCAATAGATTTATTTTGCCAATGGCAGTAATTAAACTAGGTCTTCGTGATGTC
ACATCAACAAAATATAAATCGGTTTATTATACATTCCAGCACTTTCAAGAGCTAACCAAATCCA
CAGCCATGGCACTCAAATTTGACAAAGATCTTGCTAACGCTGACTGGAACATGGTTGACAAGGC
GATTATACTTCAAAATCCATATGCTTTAAACCAAGAAGAAACAACGGAACATCAGAAGGTGAAA
TGTCCTGATTGCAACAAGGAAATAGATGAGACCCTTAACATTGAAGCCATGGAGTTGGCCAACA
GGCGTCTCCTGTCAGCGCAAATAGCAAGCTACCAACGACAGTACAGGAATGAGATTCTGTCCCA
GAGTGCAATGCAAGTGTTGGTAGGCGCGGCCGGAAGCTTTGGTGAGAAGAAGGGAGAATATATG
AGTCCTGAGAACATAAAGAATTATTCAGAAAGCAAAAAACTCCTCTCCTTTCTTAGAAAATTAC
TACTCAACTGGGTATATAATACTAAAAAAGATAAAGGGGTTCCATCAAGATACATGTTTCTTCA
TGCATGCCATAGCATAGTCTTCACAAATGAATTTGAATACACTGGATACATCGCTGTATTAATG
AACACATATCCGATGATAATCTGTTGGATTTCCCGACTAAAAGACATCTATCAATATGAGATAA
AATGTGCTAACTACTATTTTCTTACATTTTATATTCTAGAGGCTCTACTTAAGGTGGCAGCAAT
GAGGAAGGAATTTTTTTCACACACCTGGCTCCTGTTTGAGCTCGGGATTACCTTGGTCGGCATC
CTAGATATAATACTTATCGAAACAGACTCCATTAGTTACAAATTTGACTTAACTGAGACTGTGG
TCTTCATGAACGTGGTTCGACTCCTTCGTATACTGCGCATCTTGAAGCTTATAACACCAAAATT
GCTGCAAGTAATAGACAAAAGGATGAGCCAGCAGATATCCTTCCGGTATGCTATACTAAAAGGC
TACGTCCAAGGGGAAATGGATGTACTGAATATAATTGATCAGATTGCAAGTTCCAAACAGGCTA
AACAGATATTGTTAAAGCGAGTAATAAGGAATATGGATCATGCTATGAAAGAGCTGGGCTACCT
AGAGTATGATCACCCAGAAATCGCTGTCACTATGAAAACCAAGGAGGAGGTTAATGTGATGCTC
AATATGGCCAGAGAAATTGTCAAGGCTTTCAGGTCCAAAGGAATTATACATAAGGTGGAAGGCG
CTGAGATCAACAAGTTAATCATGGCCAAAAAGAAACAAGTGCTTGAGCTGCAGTCTGTTATCCA
GCCACTTAATGTTGAAGAAGCCCCATACTATATCCCATGGCTCAGTGAAGATCCTGAAGCCATA
AGCTTTATTCAGGAAAAAGCAAAAGTTGTGACATTTGACTGCGGAAATAACATATTTGAGGAAG
GCGACGAACCAGAAGGAATCTATGTAATAATTTCGGGCATGGTAAAGCTTAAAAGGTCAAAGCC
ACACCTGGAGATGGATAGAGTGTCCTCAGAGTCAGAGGTTGCTCAGACTAGAAGTTATACACTG
CCTCACACAGAATATCTGCTCAGCGGGGAAATAATAGGAGAGTTAAACTGTTTGACTAAAGAAC
GGATGCAATATTCTGCCACCTGCAAAACTGTTGTGGAGACGTATTTTATTCCCATTAGCCACTT
GTATGAAGGCTTTGAAAAAAAATACCCTAACATGAAATATAAAATGTGGCAAAAAATCGGACTT
GCCATTACTGCCCAAAAGATCCGGGAAAACTTATCTTTTGAGGACTGGAACTACAAGATGCAGT
TGAAACTCTGCAATGTCTTCGTAAGGGACATACCCAAGACCACAAAAACTGACATCTATGATGA
AACGGTAACCCATGTTGTCCTCATCCATGGATCTGCAGAAGACTGCCAGTTGCGAAAAATTTAT
AAGGCACCTTTCCTAATTCCCGTGACATGCCATCAGATACAAGGCTTAGAAGAGTTCACAAAAG
TCATGATTATTCAAACTTCCGTTGCTGTGAGAAAATTCAGGTGGAATGTAAAAAAGTACAACCC
ACCTCGAAGGATTTCAATGAAACCAGATTCTACAGAATCACTTGAAACATTAAATGAAAGTTCT
GAAGATGATGAGGATAAAAAAGAGAATGAAGAAAATGAGGAATATTTGGAAGATATTATTGACA
TCTCAAGTGTCTCCAAGAAATAACCTGGAAAGAAAGTTTAGTCAGTCGCCTGAGCTTCTCACCA
TGGCAATGAAAACATATATTTATGGAGATAGAGACAAGCCAAAGTTTATATGCCTCTTGTGTGA
TAATGTGAATTAAAGTACCTTGCACTAGTCAACCAACTCTACAAATG

hide sequence

RefSeq Acc Id:

XM_017597927 ⟹ XP_017453416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	68,674,380 - 68,740,868 (-)	NCBI
mRatBN7.2	11	55,211,774 - 55,278,002 (-)	NCBI
Rnor_6.0	11	60,184,953 - 60,251,184 (-)	NCBI

Sequence:

show sequence

CCAATTGCCTTAGGGCAAATTTCTGTCTCACCCCTTCACCGTTAAACTTTTTATCAGGTCTTGA
GAAACTACTCACCACCACATGGATAATGACTTCATATTGATGACGTACCCAGTAGTCATGCCCT
AAAAGAGAGTGGGGTGGAAGATGCTTTCCAAGTGATTCATGCTACTGCTGAGATGGAGTCTTAC
TGGACAGACATAGCTGAGAGCCGTTGCTCTATTTCCAGATCAACCTCAAGCTCTTGTTTTCTTT
TGTGATTTTTTTTTTATTATTTTGAGAAGGGCATTAGGAAGACACCAAGAAGAAAAGTCCTATT
CCCTTTGATCCCCTGTGAGTTTTTCAGAGACACAGAGTTTGAGACGCTGACTGTAATTAAATAC
GGGAATGGAAGAAGTTTTTGAGAATCTAACTACAACCCACAATGTCAAACTGAGTAATGCATGG
CTGGATCTTCTCAAAAGCGTGTTTTTGAGCACTCCCCAGGACCTCCCTGAAATCATCTTGATAC
TATCTTTGATCTGTACGATTGGAGCATTTTTGAACATGCATCTGAAGGATTTTCCAATTCCTCT
TCCTGTGATACTATTTTTAATTGGATGCTGTTTTGAAATTCTGAGTTTTGCATCTACTCAGATC
CAGTTATATGCAGATGCCATACAGTGGATGGATCCTGACATGTTTTTTGGGATATTTACACCAG
TAATTATCTTTAATGTTGCATTTGACATGGATATATACATGCTTCAAAAGTTATTTTGGCAGAT
ATTATTAATTACAATTCCTGGATTTATGATTAATTACACCTTAATACTGTGGTATCTGCAGTCT
GTGAATAAATTATCTTTAAAGACCATCCCCTGGCTACTGTTTTCAGCTGTGCTTATCAGTTCAG
ATCCTATGCTTACTTCAGCCTCCATAAGAGACCTTGGTCTTTCCAGAAGCCTCACAAATTTAAT
TAACGGAGAGAGTCTACTGACCTCAGTGATATCCTTAATTATATATAGTGCTGTTGTGCAGATC
AGTTTCAAGTCAAAGCATATGAACCATACCCTAGCCCATAAGGTCATGTCCACAGCTTGGTCAT
ATCTTGTGGAAAGTTTCATCACTGGAATCCTAATTACAAAAGCGATTCAGTTATGGATGGCTAC
CATCTTTGGTGATGACGTCAACCACATCACGCTCATCTTCTCAGTTCTATACCTCATCTTCTAT
GTTTGTGAGCTAATTGGAATGTCTGGAATATTTACTCTGGCCACCATAGGACTTTTTCTAAATT
CTACAAGTTTTAAACCAGGAGTTGAAGCATTTCTCCTCGAATTCTGGAACTGCCTGTCCTTTAT
TGGTTTCCTTATGGTGTTCACTTTCATTGGACTTCTAATCCCTGCACACACATATTTATATATA
TCATTTTCTGATGTGTATTACTCATTAAATATCTACTTCACGCTGATTGTTTTAAGGCTTCTGG
TCTTTCTGCTAATGAGCCCCATTTTGTCTCGACTTGGTCACGGGTTCAGCTGGCGCTGGGCGTT
CATCATGGTCTGGAGTGAAATGAAAGGAACACCGAACATAAATATGGCCCTTCTGCTTGCCTAC
TCGGACGTTTCTCTTGGTTCCGAGAGGGAAAGATCTCAAATATTATTCCATGGCGTGTCAGTAT
GTGTAATCACCCTGATTGTCAATAGATTTATTTTGCCAATGGCAGTAATTAAACTAGGTCTTCG
TGATGTCACATCAACAAAATATAAATCGGTTTATTATACATTCCAGCACTTTCAAGAGCTAACC
AAATCCACAGCCATGGCACTCAAATTTGACAAAGATCTTGCTAACGCTGACTGGAACATGGTTG
ACAAGGCGATTATACTTCAAAATCCATATGCTTTAAACCAAGAAGAAACAACGGAACATCAGAA
GGTGAAATGTCCTGATTGCAACAAGGAAATAGATGAGACCCTTAACATTGAAGCCATGGAGTTG
GCCAACAGGCGTCTCCTGTCAGCGCAAATAGCAAGCTACCAACGACAGTACAGGAATGAGATTC
TGTCCCAGAGTGCAATGCAAGTGTTGGTAGGCGCGGCCGGAAGCTTTGGTGAGAAGAAGGGAGA
ATATATGAGTCCTGAGAACATAAAGAATTATTCAGAAAGCAAAAAACTCCTCTCCTTTCTTAGA
AAATTACTACTCAACTGGGTATATAATACTAAAAAAGATAAAGGGGTTCCATCAAGATACATGT
TTCTTCATGCATGCCATAGCATAGTCTTCACAAATGAATTTGAATACACTGGATACATCGCTGT
ATTAATGAACACATATCCGATGATAATCTGTTGGATTTCCCGACTAAAAGACATCTATCAATAT
GAGATAAAATGTGCTAACTACTATTTTCTTACATTTTATATTCTAGAGGCTCTACTTAAGGTGG
CAGCAATGAGGAAGGAATTTTTTTCACACACCTGGCTCCTGTTTGAGCTCGGGATTACCTTGGT
CGGCATCCTAGATATAATACTTATCGAAACAGACTCCATTAGTTACAAATTTGACTTAACTGAG
ACTGTGGTCTTCATGAACGTGGTTCGACTCCTTCGTATACTGCGCATCTTGAAGCTTATAACAC
CAAAATTGCTGCAAGTAATAGACAAAAGGATGAGCCAGCAGATATCCTTCCGGTATGCTATACT
AAAAGGCTACGTCCAAGGGGAAATGGATGTACTGAATATAATTGATCAGATTGCAAGTTCCAAA
CAGGCTAAACAGATATTGTTAAAGCGAGTAATAAGGAATATGGATCATGCTATGAAAGAGCTGG
GCTACCTAGAGTATGATCACCCAGAAATCGCTGTCACTATGAAAACCAAGGAGGAGGTTAATGT
GATGCTCAATATGGCCAGAGAAATTGTCAAGGCTTTCAGGTCCAAAGGAATTATACATAAGGTG
GAAGGCGCTGAGATCAACAAGTTAATCATGGCCAAAAAGAAACAAGTGCTTGAGCTGCAGTCTG
TTATCCAGCCACTTAATGTTGAAGAAGCCCCATACTATATCCCATGGCTCAGTGAAGATCCTGA
AGCCATAAGCTTTATTCAGGAAAAAGCAAAAGTTGTGACATTTGACTGCGGAAATAACATATTT
GAGGAAGGCGACGAACCAGAAGGAATCTATGTAATAATTTCGGGCATGGTAAAGCTTAAAAGGT
CAAAGCCACACCTGGAGATGGATAGAGTGTCCTCAGAGTCAGAGGTTGCTCAGACTAGAAGTTA
TACACTGCCTCACACAGAATATCTGCTCAGCGGGGAAATAATAGGAGAGTTAAACTGTTTGACT
AAAGAACGGATGCAATATTCTGCCACCTGCAAAACTGTTGTGGAGACGTATTTTATTCCCATTA
GCCACTTGTATGAAGGCTTTGAAAAAAAATACCCTAACATGAAATATAAAATGTGGCAAAAAAT
CGGACTTGCCATTACTGCCCAAAAGATCCGGGAAAACTTATCTTTTGAGGACTGGAACTACAAG
ATGCAGTTGAAACTCTGCAATGTCTTCGTAAGGGACATACCCAAGACCACAAAAACTGACATCT
ATGATGAAACGGTAACCCATGTTGTCCTCATCCATGGATCTGCAGAAGACTGCCAGTTGCGAAA
AATTTATAAGGCACCTTTCCTAATTCCCGTGACATGCCATCAGATACAAGGCTTAGAAGAGTTC
ACAAAAGTCATGATTATTCAAACTTCCGTTGCTGTGAGAAAATTCAGGTGGAATGTAAAAAAGT
ACAACCCACCTCGAAGGATTTCAATGAAACCAGATTCTACAGAATCACTTGAAACATTAAATGA
AAGTTCTGAAGATGATGAGGATAAAAAAGAGAATGAAGAAAATGAGGAATATTTGGAAGATATT
ATTGACATCTCAAGTGTCTCCAAGAAATAACCTGGAAAGAAAGTTTAGTCAGTCGCCTGAGCTT
CTCACCATGGCAATGAAAACATATATTTATGGAGATAGAGACAAGCCAAAGTTTATATGCCTCT
TGTGTGATAATGTGAATTAAAGTACCTTGCACTAGTCAACCAACTCTACAAATG

hide sequence

RefSeq Acc Id:

XM_039088182 ⟹ XP_038944110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	68,674,380 - 68,740,868 (-)	NCBI
mRatBN7.2	11	55,211,774 - 55,278,279 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008762	(Get FASTA)	NCBI Sequence Viewer
	NP_001424677	(Get FASTA)	NCBI Sequence Viewer
	NP_001424678	(Get FASTA)	NCBI Sequence Viewer
	NP_001424679	(Get FASTA)	NCBI Sequence Viewer
	NP_001424680	(Get FASTA)	NCBI Sequence Viewer
	XP_008766944	(Get FASTA)	NCBI Sequence Viewer
	XP_017453414	(Get FASTA)	NCBI Sequence Viewer
	XP_017453415	(Get FASTA)	NCBI Sequence Viewer
	XP_017453416	(Get FASTA)	NCBI Sequence Viewer
	XP_038944110	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	DAA01461	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072593.2
	ENSRNOP00000074847
	ENSRNOP00000074847.2

RefSeq Acc Id:

NP_001008762 ⟸ NM_001008762

- UniProtKB:

A0A0G2K938 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEVFENLTTTHNVKLSNAWLDLLKSVFLSTPQDLPEIILILSLICTIGAFLNMHLKDFPIPLP
VILFLIGCCFEILSFASTQIQLYADAIQWMDPDMFFGIFTPVIIFNVAFDMDIYMLQKLFWQIL
LITIPGFMINYTLILWYLQSVNKLSLKTIPWLLFSAVLISSDPMLTSASIRDLGLSRSLTNLIN
GESLLTSVISLIIYSAVVQISFKSKHMNHTLAHKVMSTAWSYLVESFITGILITKAIQLWMATI
FGDDVNHITLIFSVLYLIFYVCELIGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIG
FLMVFTFIGLLIPAHTYLYISFSDVYYSLNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFI
MVWSEMKGTPNINMALLLAYSDVSLGSERERSQILFHGVSVCVITLIVNRFILPMAVIKLGLRD
VTSTKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNMVDKAIILQNPYALNQEETTEHQKV
KCPDCNKEIDETLNIEAMELANRRLLSAQIASYQRQYRNEILSQSAMQVLVGAAGSFGEKKGEY
MSPENIKNYSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHSIVFTNEFEYTGYIAVL
MNTYPMIICWISRLKDIYQYEIKCANYYFLTFYILEALLKVAAMRKEFFSHTWLLFELGITLVG
ILDIILIETDSISYKFDLTETVVFMNVVRLLRILRILKLITPKLLQVIDKRMSQQISFRYAILK
GYVQGEMDVLNIIDQIASSKQAKQILLKRVIRNMDHAMKELGYLEYDHPEIAVTMKTKEEVNVM
LNMAREIVKAFRSKGIIHKVEGAEINKLIMAKKKQVLELQSVIQPLNVEEAPYYIPWLSEDPEA
ISFIQEKAKVVTFDCGNNIFEEGDEPEGIYVIISGMVKLKRSKPHLEMDRVSSESEVAQTRSYT
LPHTEYLLSGEIIGELNCLTKERMQYSATCKTVVETYFIPISHLYEGFEKKYPNMKYKMWQKIG
LAITAQKIRENLSFEDWNYKMQLKLCNVFVRDIPKTTKTDIYDETVTHVVLIHGSAEDCQLRKI
YKAPFLIPVTCHQIQGLEEFTKVMIIQTSVAVRKFRWNVKKYNPPRRISMKPDSTESLETLNES
SEDDEDKKENEENEEYLEDIIDISSVSKK

hide sequence

RefSeq Acc Id:	XP_008766944 ⟸ XM_008768722
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K938 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEVFENLTTTHNVKLSNAWLDLLKSVFLSTPQDLPEIILILSLICTIGAFLNMHLKDFPIPLP VILFLIGCCFEILSFASTQIQLYADAIQWMDPDMFFGIFTPVIIFNVAFDMDIYMLQKLFWQIL LITIPGFMINYTLILWYLQSVNKLSLKTIPWLLFSAVLISSDPMLTSASIRDLGLSRSLTNLIN GESLLTSVISLIIYSAVVQISFKSKHMNHTLAHKVMSTAWSYLVESFITGILITKAIQLWMATI FGDDVNHITLIFSVLYLIFYVCELIGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIG FLMVFTFIGLLIPAHTYLYISFSDVYYSLNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFI MVWSEMKGTPNINMALLLAYSDVSLGSERERSQILFHGVSVCVITLIVNRFILPMAVIKLGLRD VTSTKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNMVDKAIILQNPYALNQEETTEHQKV KCPDCNKEIDETLNIEAMELANRRLLSAQIASYQRQYRNEILSQSAMQVLVGAAGSFGEKKGEY MSPENIKNYSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHSIVFTNEFEYTGYIAVL MNTYPMIICWISRLKDIYQYEIKCANYYFLTFYILEALLKVAAMRKEFFSHTWLLFELGITLVG ILDIILIETDSISYKFDLTETVVFMNVVRLLRILRILKLITPKLLQVIDKRMSQQISFRYAILK GYVQGEMDVLNIIDQIASSKQAKQILLKRVIRNMDHAMKELGYLEYDHPEIAVTMKTKEEVNVM LNMAREIVKAFRSKGIIHKVEGAEINKLIMAKKKQVLELQSVIQPLNVEEAPYYIPWLSEDPEA ISFIQEKAKVVTFDCGNNIFEEGDEPEGIYVIISGMVKLKRSKPHLEMDRVSSESEVAQTRSYT LPHTEYLLSGEIIGELNCLTKERMQYSATCKTVVETYFIPISHLYEGFEKKYPNMKYKMWQKIG LAITAQKIRENLSFEDWNYKMQLKLCNVFVRDIPKTTKTDIYDETVTHVVLIHGSAEDCQLRKI YKAPFLIPVTCHQIQGLEEFTKVMIIQTSVAVRKFRWNVKKYNPPRRISMKPDSTESLETLNES SEDDEDKKENEENEEYLEDIIDISSVSKK hide sequence

RefSeq Acc Id:

XP_017453414 ⟸ XM_017597925

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEEVFENLTTTHNVKLSNAWLDLLKSVFLSTPQDLPEIILILSLICTIGAFLNMHLKDFPIPLP
VILFLIGCCFEILSFASTQIQLYADAIQWMDPDMFFGIFTPVIIFNVAFDMDIYMLQKLFWQIL
LITIPGFMINYTLILWYLQSVNKLSLKTIPWLLFSAVLISSDPMLTSASIRDLGLSRSLTNLIN
GESLLTSVISLIIYSAVVQISFKSKHMNHTLAHKVMSTAWSYLVESFITGILITKAIQLWMATI
FGDDVNHITLIFSVLYLIFYVCELIGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIG
FLMVFTFIGLLIPAHTYLYISFSDVYYSLNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFI
MVWSEMKGTPNINMALLLAYSDVSLGSERERSQILFHGVSVCVITLIVNRFILPMAVIKLGLRD
VTSTKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNMVDKAIILQNPYALNQEETTEHQKV
KCPDCNKEIDETLNIEAMELANRRLLSAQIASYQRQYRNEILSQSAMQVLVGAAGSFGEKKGEY
MSPENIKNYSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHSIVFTNEFEYTGYIAVL
MNTYPMIICWISRLKDIYQYEIKCANYYFLTFYILEALLKVAAMRKEFFSHTWLLFELGITLVG
ILDIILIETDSISYKFDLTETVVFMNVVRLLRILRILKLITPKLLQVIDKRMSQQISFRYAILK
GYVQGEMDVLNIIDQIASSKQAKQILLKRVIRNMDHAMKELGYLEYDHPEIAVTMKTKEEVNVM
LNMAREIVKAFRSKGIIHKVEGAEINKLIMAKKKQVLELQSVIQPLNVEEAPYYIPWLSEDPEA
ISFIQEKAKVVTFDCGNNIFEEGDEPEGIYVIISGMVKLKRSKPHLEMDRVSSESEVAQTRSYT
LPHTEYLLSGEIIGELNCLTKERMQYSATCKTVVETYFIPISHLYEGFEKKYPNMKYKMWQKIG
LAITAQKIRENLSFEDWNYKMQLKLCNVFVRDIPKTTKTDIYDETVTHVVLIHGSAEDCQLRKI
YKAPFLIPVTCHQIQGLEEFTKVMIIQTSVAVRKFRWNVKKYNPPRRISMKPDSTESLETLNES
SEDDEDKKENEENEEYLEDIIDISSVSKK

hide sequence

RefSeq Acc Id:

XP_017453415 ⟸ XM_017597926

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEEVFENLTTTHNVKLSNAWLDLLKSVFLSTPQDLPEIILILSLICTIGAFLNMHLKDFPIPLP
VILFLIGCCFEILSFASTQIQLYADAIQWMDPDMFFGIFTPVIIFNVAFDMDIYMLQKLFWQIL
LITIPGFMINYTLILWYLQSVNKLSLKTIPWLLFSAVLISSDPMLTSASIRDLGLSRSLTNLIN
GESLLTSVISLIIYSAVVQISFKSKHMNHTLAHKVMSTAWSYLVESFITGILITKAIQLWMATI
FGDDVNHITLIFSVLYLIFYVCELIGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIG
FLMVFTFIGLLIPAHTYLYISFSDVYYSLNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFI
MVWSEMKGTPNINMALLLAYSDVSLGSERERSQILFHGVSVCVITLIVNRFILPMAVIKLGLRD
VTSTKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNMVDKAIILQNPYALNQEETTEHQKV
KCPDCNKEIDETLNIEAMELANRRLLSAQIASYQRQYRNEILSQSAMQVLVGAAGSFGEKKGEY
MSPENIKNYSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHSIVFTNEFEYTGYIAVL
MNTYPMIICWISRLKDIYQYEIKCANYYFLTFYILEALLKVAAMRKEFFSHTWLLFELGITLVG
ILDIILIETDSISYKFDLTETVVFMNVVRLLRILRILKLITPKLLQVIDKRMSQQISFRYAILK
GYVQGEMDVLNIIDQIASSKQAKQILLKRVIRNMDHAMKELGYLEYDHPEIAVTMKTKEEVNVM
LNMAREIVKAFRSKGIIHKVEGAEINKLIMAKKKQVLELQSVIQPLNVEEAPYYIPWLSEDPEA
ISFIQEKAKVVTFDCGNNIFEEGDEPEGIYVIISGMVKLKRSKPHLEMDRVSSESEVAQTRSYT
LPHTEYLLSGEIIGELNCLTKERMQYSATCKTVVETYFIPISHLYEGFEKKYPNMKYKMWQKIG
LAITAQKIRENLSFEDWNYKMQLKLCNVFVRDIPKTTKTDIYDETVTHVVLIHGSAEDCQLRKI
YKAPFLIPVTCHQIQGLEEFTKVMIIQTSVAVRKFRWNVKKYNPPRRISMKPDSTESLETLNES
SEDDEDKKENEENEEYLEDIIDISSVSKK

hide sequence

RefSeq Acc Id:

XP_017453416 ⟸ XM_017597927

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEEVFENLTTTHNVKLSNAWLDLLKSVFLSTPQDLPEIILILSLICTIGAFLNMHLKDFPIPLP
VILFLIGCCFEILSFASTQIQLYADAIQWMDPDMFFGIFTPVIIFNVAFDMDIYMLQKLFWQIL
LITIPGFMINYTLILWYLQSVNKLSLKTIPWLLFSAVLISSDPMLTSASIRDLGLSRSLTNLIN
GESLLTSVISLIIYSAVVQISFKSKHMNHTLAHKVMSTAWSYLVESFITGILITKAIQLWMATI
FGDDVNHITLIFSVLYLIFYVCELIGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIG
FLMVFTFIGLLIPAHTYLYISFSDVYYSLNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFI
MVWSEMKGTPNINMALLLAYSDVSLGSERERSQILFHGVSVCVITLIVNRFILPMAVIKLGLRD
VTSTKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNMVDKAIILQNPYALNQEETTEHQKV
KCPDCNKEIDETLNIEAMELANRRLLSAQIASYQRQYRNEILSQSAMQVLVGAAGSFGEKKGEY
MSPENIKNYSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHSIVFTNEFEYTGYIAVL
MNTYPMIICWISRLKDIYQYEIKCANYYFLTFYILEALLKVAAMRKEFFSHTWLLFELGITLVG
ILDIILIETDSISYKFDLTETVVFMNVVRLLRILRILKLITPKLLQVIDKRMSQQISFRYAILK
GYVQGEMDVLNIIDQIASSKQAKQILLKRVIRNMDHAMKELGYLEYDHPEIAVTMKTKEEVNVM
LNMAREIVKAFRSKGIIHKVEGAEINKLIMAKKKQVLELQSVIQPLNVEEAPYYIPWLSEDPEA
ISFIQEKAKVVTFDCGNNIFEEGDEPEGIYVIISGMVKLKRSKPHLEMDRVSSESEVAQTRSYT
LPHTEYLLSGEIIGELNCLTKERMQYSATCKTVVETYFIPISHLYEGFEKKYPNMKYKMWQKIG
LAITAQKIRENLSFEDWNYKMQLKLCNVFVRDIPKTTKTDIYDETVTHVVLIHGSAEDCQLRKI
YKAPFLIPVTCHQIQGLEEFTKVMIIQTSVAVRKFRWNVKKYNPPRRISMKPDSTESLETLNES
SEDDEDKKENEENEEYLEDIIDISSVSKK

hide sequence

Ensembl Acc Id:

ENSRNOP00000074847 ⟸ ENSRNOT00000080148

Ensembl Acc Id:

ENSRNOP00000045235 ⟸ ENSRNOT00000040908

Ensembl Acc Id:

ENSRNOP00000072593 ⟸ ENSRNOT00000086602

RefSeq Acc Id:	XP_038944110 ⟸ XM_039088182
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000082098 ⟸ ENSRNOT00000114657

Protein Domains

Cation/H+ exchanger transmembrane Cyclic nucleotide-binding Ion transport

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K3D4-F1-model_v2	AlphaFold	A0A0G2K3D4	1-1181	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698134

Promoter ID:

EPDNEW_R8659

Type:

initiation region

Name:

Slc9c1_1

Description:

solute carrier family 9 member C1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	60,251,379 - 60,251,439	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309075	AgrOrtholog
BioCyc Gene	G2FUF-21381	BioCyc
Ensembl Genes	ENSRNOG00000022007	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000080148	ENTREZGENE
	ENSRNOT00000080148.4	UniProtKB/TrEMBL
	ENSRNOT00000086602.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.350	UniProtKB/TrEMBL
	2.60.120.10	UniProtKB/TrEMBL
InterPro	Cation/H_exchanger	UniProtKB/TrEMBL
	Cation/H_exchanger_CPA1	UniProtKB/TrEMBL
	cNMP-bd-like	UniProtKB/TrEMBL
	cNMP-bd_dom	UniProtKB/TrEMBL
	Ion_trans_dom	UniProtKB/TrEMBL
	RmlC-like_jellyroll	UniProtKB/TrEMBL
	Volt_channel_dom_sf	UniProtKB/TrEMBL
NCBI Gene	288117	ENTREZGENE
PANTHER	Cation/H_exchanger_cons-reg	UniProtKB/TrEMBL
	PTHR10110:SF87	UniProtKB/TrEMBL
Pfam	cNMP_binding	UniProtKB/TrEMBL
	Ion_trans	UniProtKB/TrEMBL
	Na_H_Exchanger	UniProtKB/TrEMBL
PhenoGen	Slc9c1	PhenoGen
PROSITE	CNMP_BINDING_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022007	RatGTEx
Superfamily-SCOP	cNMP_binding	UniProtKB/TrEMBL
	Voltage-gated potassium channels	UniProtKB/TrEMBL
UniProt	A0A0G2K3D4_RAT	UniProtKB/TrEMBL
	A0A0G2K938	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q7M6Y8	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc9c1	solute carrier family 9 member C1	Slc9c1	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Slc9c1	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	Slc9a10	solute carrier family 9, member 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Slc9a10	solute carrier family 9, member 10	Gm610	gene model 610, (NCBI)	Symbol and Name updated	1299863	APPROVED
2005-12-06	Gm610	gene model 610, (NCBI)	Gm610_predicted	gene model 610, (NCBI) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Gm610_predicted	gene model 610, (NCBI) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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