Chst8 (carbohydrate sulfotransferase 8) - Rat Genome Database

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Gene: Chst8 (carbohydrate sulfotransferase 8) Rattus norvegicus
Analyze
Symbol: Chst8
Name: carbohydrate sulfotransferase 8
RGD ID: 1308979
Description: Orthologous to human CHST8 (carbohydrate sulfotransferase 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8; LOC308511
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,431,144 - 96,572,880 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl196,431,145 - 96,572,880 (-)EnsemblGRCr8
mRatBN7.2187,294,144 - 87,435,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,294,540 - 87,435,900 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx192,697,574 - 92,839,129 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,163,551 - 101,305,117 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,455,862 - 94,597,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,542,095 - 90,685,257 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,542,096 - 90,685,257 (-)Ensemblrn6Rnor6.0
Rnor_5.0191,681,356 - 91,822,788 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4187,152,490 - 87,311,536 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,658,173 - 81,797,008 (-)NCBICelera
RGSC_v3.1187,230,992 - 87,232,087 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10988300   PMID:11001942   PMID:11445554   PMID:12477932   PMID:12944377  


Genomics

Comparative Map Data
Chst8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,431,144 - 96,572,880 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl196,431,145 - 96,572,880 (-)EnsemblGRCr8
mRatBN7.2187,294,144 - 87,435,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,294,540 - 87,435,900 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx192,697,574 - 92,839,129 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,163,551 - 101,305,117 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,455,862 - 94,597,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,542,095 - 90,685,257 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,542,096 - 90,685,257 (-)Ensemblrn6Rnor6.0
Rnor_5.0191,681,356 - 91,822,788 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4187,152,490 - 87,311,536 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,658,173 - 81,797,008 (-)NCBICelera
RGSC_v3.1187,230,992 - 87,232,087 (-)NCBI
Cytogenetic Map1q21NCBI
CHST8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,621,953 - 33,773,509 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,621,942 - 33,773,509 (+)Ensemblhg38GRCh38
GRCh371934,112,859 - 34,264,414 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,867,274 - 38,956,254 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341938,867,273 - 38,956,253NCBI
Celera1930,806,474 - 30,958,041 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,612,378 - 30,763,394 (+)NCBIHuRef
CHM1_11934,114,228 - 34,265,711 (+)NCBICHM1_1
T2T-CHM13v2.01936,142,649 - 36,294,279 (+)NCBIT2T-CHM13v2.0
Chst8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,373,893 - 34,512,136 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,373,893 - 34,512,136 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38734,674,468 - 34,812,711 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,674,468 - 34,812,711 (-)Ensemblmm10GRCm38
MGSCv37735,459,487 - 35,597,730 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36734,383,519 - 34,521,436 (-)NCBIMGSCv36mm8
Celera729,810,004 - 29,947,409 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map720.53NCBI
Chst8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,356,679 - 3,488,222 (+)Ensembl
ChiLan1.0NW_0049554683,357,368 - 3,486,195 (+)NCBIChiLan1.0ChiLan1.0
CHST8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,599,185 - 39,754,876 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,599,194 - 41,754,989 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,549,667 - 30,705,452 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11939,338,488 - 39,445,592 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1939,354,974 - 39,445,592 (+)EnsemblpanPan2panpan1.1
CHST8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,458,636 - 118,551,610 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,458,625 - 118,524,104 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1117,861,417 - 117,990,971 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01119,058,922 - 119,188,616 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,058,911 - 119,183,878 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,619,785 - 118,749,190 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,245,888 - 118,375,705 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,304,573 - 119,434,387 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chst8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,403,690 - 9,520,771 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,125,097 - 2,242,218 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,125,111 - 2,242,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,371,531 - 43,493,246 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1643,371,436 - 43,493,250 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHST8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,657,639 - 28,808,906 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl628,722,901 - 28,808,904 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660736,389,650 - 6,556,430 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,403,127 - 9,526,722 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247949,403,216 - 9,526,633 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Chst8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12163,910,991 - 164,016,852 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Chst8
468 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:75
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000037700
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat

Markers in Region
RH132736  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,294,155 - 87,294,341 (+)MAPPERmRatBN7.2
Rnor_6.0190,542,107 - 90,542,292NCBIRnor6.0
Rnor_5.0191,681,368 - 91,681,553UniSTSRnor5.0
RGSC_v3.4187,152,502 - 87,152,687UniSTSRGSC3.4
Celera181,658,185 - 81,658,370UniSTS
RH 3.4 Map1860.0UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 5 45 141 55 51 23 25 23 6 202 91 1 127 69 91 28 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000037700   ⟹   ENSRNOP00000030833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl190,542,096 - 90,685,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl196,432,811 - 96,572,880 (-)Ensembl
mRatBN7.2 Ensembl187,294,540 - 87,435,900 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156329   ⟹   ENSRNOP00000107768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl196,431,145 - 96,572,880 (-)Ensembl
RefSeq Acc Id: NM_001107504   ⟹   NP_001100974
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,431,144 - 96,572,880 (-)NCBI
mRatBN7.2187,294,144 - 87,435,900 (-)NCBI
Rnor_6.0190,542,095 - 90,685,257 (-)NCBI
Rnor_5.0191,681,356 - 91,822,788 (-)NCBI
RGSC_v3.4187,152,490 - 87,311,536 (-)RGD
Celera181,658,173 - 81,797,008 (-)RGD
Sequence:
RefSeq Acc Id: XM_063261661   ⟹   XP_063117731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,431,144 - 96,512,352 (-)NCBI
RefSeq Acc Id: XM_063261662   ⟹   XP_063117732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,431,144 - 96,572,162 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100974 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117731 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117732 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61905 (Get FASTA)   NCBI Sequence Viewer  
  EDM07636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107768
  ENSRNOP00000107768.1
  ENSRNOP00000108839.1
RefSeq Acc Id: NP_001100974   ⟸   NM_001107504
- UniProtKB: B1WBV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000030833   ⟸   ENSRNOT00000037700
RefSeq Acc Id: XP_063117732   ⟸   XM_063261662
- Peptide Label: isoform X1
- UniProtKB: B1WBV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117731   ⟸   XM_063261661
- Peptide Label: isoform X1
- UniProtKB: B1WBV7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107768   ⟸   ENSRNOT00000156329

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBV7-F1-model_v2 AlphaFold B1WBV7 1-417 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308979 AgrOrtholog
BioCyc Gene G2FUF-60003 BioCyc
Ensembl Genes ENSRNOG00000022919 Ensembl
  ENSRNOG00000070506 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000110239.2 UniProtKB/TrEMBL
  ENSRNOT00000156329 ENTREZGENE
  ENSRNOT00000156329.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8367390 IMAGE-MGC_LOAD
InterPro Carb_sulfotrans_8-10 UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/TrEMBL
KEGG Report rno:308511 UniProtKB/TrEMBL
MGC_CLONE MGC:187625 IMAGE-MGC_LOAD
NCBI Gene 308511 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE 8 UniProtKB/TrEMBL
  PTHR12137 UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/TrEMBL
PhenoGen Chst8 PhenoGen
RatGTEx ENSRNOG00000022919 RatGTEx
  ENSRNOG00000070506 RatGTEx
UniProt A0ABK0LRW0_RAT UniProtKB/TrEMBL
  A0ABK0LZD4_RAT UniProtKB/TrEMBL
  B1WBV7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Chst8  carbohydrate sulfotransferase 8  Chst8  carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Chst8  carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8   Chst8_predicted  carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chst8_predicted  carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 (predicted)      Symbol and Name status set to approved 70820 APPROVED