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Gene: Nagpa (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase) Rattus norvegicus

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Symbol:

Nagpa

Name:

N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

RGD ID:

1308972

Description:

Predicted to be involved in secretion of lysosomal enzymes. Orthologous to human NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC360476

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	10,886,723 - 10,895,066 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	10,886,733 - 10,895,074 (+)	Ensembl				GRCr8
mRatBN7.2	10	10,380,262 - 10,388,609 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,380,264 - 10,388,592 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	15,087,066 - 15,095,397 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,575,903 - 14,584,234 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,244,859 - 10,253,314 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,573,191 - 10,581,516 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,573,191 - 10,581,516 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	9,342,962 - 9,351,287 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	10,495,244 - 10,503,572 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	9,346,383 - 9,354,711 (+)	NCBI		Celera
RGSC_v3.1	10	10,495,274 - 10,503,017 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Persistent Stuttering 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

folic acid (ISO)

gentamycin (EXP)

methimazole (EXP)

paracetamol (EXP,ISO)

phenobarbital (EXP,ISO)

propionic acid (ISO)

rotenone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

secretion of lysosomal enzymes (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19710420

Genomics

Comparative Map Data

Nagpa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	10,886,723 - 10,895,066 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	10,886,733 - 10,895,074 (+)	Ensembl				GRCr8
mRatBN7.2	10	10,380,262 - 10,388,609 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,380,264 - 10,388,592 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	15,087,066 - 15,095,397 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,575,903 - 14,584,234 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,244,859 - 10,253,314 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,573,191 - 10,581,516 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,573,191 - 10,581,516 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	9,342,962 - 9,351,287 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	10,495,244 - 10,503,572 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	9,346,383 - 9,354,711 (+)	NCBI		Celera
RGSC_v3.1	10	10,495,274 - 10,503,017 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

NAGPA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	5,024,844 - 5,033,935 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	5,024,756 - 5,034,141 (-)	Ensembl			hg38	GRCh38
GRCh37	16	5,074,845 - 5,083,936 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	5,014,846 - 5,023,937 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	5,014,847 - 5,023,916	NCBI
Celera	16	5,284,227 - 5,293,324 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	5,040,902 - 5,049,999 (-)	NCBI		HuRef
CHM1_1	16	5,076,051 - 5,085,148 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	5,054,343 - 5,063,428 (-)	NCBI		T2T-CHM13v2.0

Nagpa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	5,013,144 - 5,024,891 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	5,013,153 - 5,021,876 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	5,195,280 - 5,204,032 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	5,195,289 - 5,204,012 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	5,195,373 - 5,204,105 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	5,110,614 - 5,119,333 (-)	NCBI		MGSCv36	mm8
Celera	16	5,828,302 - 5,837,030 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.51	NCBI

Nagpa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	12,513,643 - 12,520,713 (+)	Ensembl
ChiLan1.0	NW_004955442	12,513,993 - 12,520,604 (+)	NCBI	ChiLan1.0	ChiLan1.0

NAGPA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	5,552,112 - 5,561,198 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	9,342,453 - 9,351,545 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,948,043 - 3,957,156 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	5,112,351 - 5,121,544 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	5,112,982 - 5,121,437 (-)	Ensembl			panPan2	panpan1.1

NAGPA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	36,415,664 - 36,425,542 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,415,700 - 36,425,176 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	37,807,259 - 37,817,143 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	36,617,867 - 36,627,754 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	36,617,886 - 36,627,754 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	36,414,461 - 36,424,358 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,305,662 - 36,315,556 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	36,707,858 - 36,717,756 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nagpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	107,075,299 - 107,083,511 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	4,918,745 - 4,928,926 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	4,918,774 - 4,929,064 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NAGPA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	37,378,471 - 37,388,705 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	37,378,461 - 37,388,705 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	38,384,356 - 38,394,597 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NAGPA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,695,824 - 4,705,336 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,695,826 - 4,705,172 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	25,949,793 - 25,959,158 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nagpa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	2,828,835 - 2,835,907 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624824	2,828,835 - 2,838,116 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nagpa
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	16,707,706 - 16,715,951 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nagpa
81 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	392
Count of miRNA genes:	211
Interacting mature miRNAs:	251
Transcripts:	ENSRNOT00000003888
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

RH132002

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	10,388,309 - 10,388,528 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,581,234 - 10,581,452	NCBI	Rnor6.0
Rnor_5.0	10	9,351,005 - 9,351,223	UniSTS	Rnor5.0
RGSC_v3.4	10	10,503,290 - 10,503,508	UniSTS	RGSC3.4
Celera	10	9,354,429 - 9,354,647	UniSTS
RH 3.4 Map	10	100.53	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003888 ⟹ ENSRNOP00000003888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	10,886,733 - 10,895,074 (+)	Ensembl
mRatBN7.2 Ensembl	10	10,380,264 - 10,388,592 (+)	Ensembl
Rnor_6.0 Ensembl	10	10,573,191 - 10,581,516 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154904 ⟹ ENSRNOP00000105227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	10,886,733 - 10,895,074 (+)	Ensembl

RefSeq Acc Id:

NM_001108265 ⟹ NP_001101735

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	10,886,731 - 10,895,059 (+)	NCBI
mRatBN7.2	10	10,380,264 - 10,388,592 (+)	NCBI
Rnor_6.0	10	10,573,191 - 10,581,516 (+)	NCBI
Rnor_5.0	10	9,342,962 - 9,351,287 (+)	NCBI
RGSC_v3.4	10	10,495,244 - 10,503,572 (+)	RGD
Celera	10	9,346,383 - 9,354,711 (+)	RGD

Sequence:

show sequence

CGAGCCCACGTGACCGGAGCACCAAGCCAATATGGCGGCGCCCAGGGGGCCGGGGCTGTTCTTC
AAACCCGCGCTGCTCGGTTTGCTTGGGGTGGCGTGGTGCAGCTTAGGCTTCGGGGTTTCCCGAG
ACGATGACCTGCTGCTGCCTTACCCACTCGCGCGCAGACGTCCCTCGCGGGACTGCGCCCGGGT
GCACGCAGGCAGCCCAGAACAGGAGAGCTGGCCTCCGCCACCCACGAACCCCGGCGCCAGCCAC
CGCGCGGCCGTGCGCACCTTTGTGTCGCACTTCGAGGGACGCGCGGTGGCCGGCCACCTGACGC
GGGTGGCTGACCCCCTACGCACTTTCTCGGTGCTGGAGCCGGGAGGACCCGGAGGCTGCGCGCA
GAGGCGTCGCGCTACTGTGGAGGACACAGCCGTCCCGGCCGGTTGCCGCGTCGCTCAGAACGGT
GGCTTCTTCCGCATGGGGACTGGCGAGTGCTTGGGGAATGTGGTGAGCGACGGGCGGCTGGTGA
GCAGCTCTGGGGGACTGCAGAACGCTCAGTTCGGTATCCGACGCGACGGGACCTTAGTCACCGG
GTACCTGTCTGAGGAGGACGTCCTGGACACGGTGAACCCATTCGTGCAGCTACTGAGCGGAGTG
GTATGGCTCATCCGTAATGGAAGCATCTACATCAACGAGAGCCAAATCACCGAGTGCGATGAGA
CGCAGGAGACAGGTTCTTTCAGCAAATTTGTGAACGTGATGTCAGCCAGGACAGCCGTGGGTCA
TGACCGTAAGGGGCAGCTTATACTCTTCCACGCGGACGGACAGACGGAGCAGCGTGGCCTCAAC
CTGTGGGAGATGGCAGAGTTCCTGCTGAAACAAGACGTGGTCAATGCCATCAACCTGGATGGAG
GCGGTTCTGCCACCTTTGTGCTCAATGGGACCCTAGCCAGTTACCCCTCAGATCACTGCCAGGA
CAACATGTGGCGCTGTCCCCGCCGTGTTTCCACTGTGGTATGTGTGCATGAACCCCGCTGCCAG
CCACCCAACTGCAGCGGCCATGGGACCTGTGTGGATGGCCGTTGTGAATGCACCAGCCACTTCT
GGCACGGTGAAGCCTGCAGTGAGCTGAACTGCGGCCCCTCCAACTGCAGCCAGCATGGGCTCTG
CACAGAGACTGGCTGCAGGTGTGATGCTGGGTGGACAGGATCCAACTGCAGTGAAGAGTGTCCT
CTGGGCTGGTATGGGCCAGGTTGCCAGAGGCCTTGCCAGTGCGAGCACCAGCGTCCCTGTGACC
CCCAGACTGGCAACTGCAGCATCTCCCAAGTGAAGCAGTGTCTCCAGTCAACTGAGGCCCCACC
GAGGGCAGGAGGGCTGGCCTCTTTCACCGGGACCACGTGGCTGGCACTTACCCTCATCCTAATT
TTCCTGCTGCTGATCAGCACGGCCGTCAACGTGTCCTTGCTCCTGGGCTCCCGGGCAGAGAGGA
ACCGGCACCTCGACGGGGACTACGTGTACCACCCACTGCAGGAGGTGAACGGGGACGCGCTGGC
TGCAGAGAAGGAGCAAACAGAGGAAACTTGCAACCCCTTCAAGGACTGACGGAGAGCTAGGCTG
CCCCAGTGGTATGCTGCAGATAGTCTTGTCCCTGCTCCTCACCTTTACAGGGGCAGTTGTGAGG
CCACTGGCATGGATGCTGTGCACCCCGCCCCTTGCCTGACCATGTGGCCCCTGTCCCCGTGCTG
CGGCTCACGCCACCCCAGCAATACGGAGCTCTGGAGAGCCTGCACCTGCTTCCCTGCCTGCCTG
TATCTGCTGCCCAGAGGCCTGTCTCCCACAGGGGTCTCGCCACTGCCAAAGACTCCCAGGAAGC
CACTTGCAAATGGAACTCTGTGGCCCAGGCATGACAAAAGTGGCCACTCTGCTGGGCCACCTGC
ACAGGGGTGGAATGAAAGACTTACCCCGGGCTCAGCCACGGCGCGTGGCCGCCTCTATGCAGCC
TCATCGCTGGACCGCCAGCTAGAACTCTGCATCTTGTCACAGGAGGCCCCTCATAAGAAGGGAT
GGGGAGGGAAGGAAGTCGCCATGTTTACAGACCTATTTTTGTTGTCTTGCTCCCTAAAGGAGTT
TTCTAACACTTGAATAAATTGGGATACT

hide sequence

RefSeq Acc Id:

XM_039086258 ⟹ XP_038942186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	10,886,723 - 10,895,066 (+)	NCBI
mRatBN7.2	10	10,380,262 - 10,388,609 (+)	NCBI

RefSeq Acc Id:

XR_005489885

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	10,886,723 - 10,894,429 (+)	NCBI
mRatBN7.2	10	10,380,262 - 10,387,962 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101735	(Get FASTA)	NCBI Sequence Viewer
	XP_038942186	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68968	(Get FASTA)	NCBI Sequence Viewer
	EDL96261	(Get FASTA)	NCBI Sequence Viewer
	EDL96262	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003888
	ENSRNOP00000003888.7
	ENSRNOP00000105227.1

RefSeq Acc Id:

NP_001101735 ⟸ NM_001108265

- UniProtKB:

G3V6D1 (UniProtKB/TrEMBL), A6K4P0 (UniProtKB/TrEMBL), B5DF88 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPRGPGLFFKPALLGLLGVAWCSLGFGVSRDDDLLLPYPLARRRPSRDCARVHAGSPEQESW
PPPPTNPGASHRAAVRTFVSHFEGRAVAGHLTRVADPLRTFSVLEPGGPGGCAQRRRATVEDTA
VPAGCRVAQNGGFFRMGTGECLGNVVSDGRLVSSSGGLQNAQFGIRRDGTLVTGYLSEEDVLDT
VNPFVQLLSGVVWLIRNGSIYINESQITECDETQETGSFSKFVNVMSARTAVGHDRKGQLILFH
ADGQTEQRGLNLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRRVS
TVVCVHEPRCQPPNCSGHGTCVDGRCECTSHFWHGEACSELNCGPSNCSQHGLCTETGCRCDAG
WTGSNCSEECPLGWYGPGCQRPCQCEHQRPCDPQTGNCSISQVKQCLQSTEAPPRAGGLASFTG
TTWLALTLILIFLLLISTAVNVSLLLGSRAERNRHLDGDYVYHPLQEVNGDALAAEKEQTEETC
NPFKD

hide sequence

Ensembl Acc Id:

ENSRNOP00000003888 ⟸ ENSRNOT00000003888

RefSeq Acc Id:	XP_038942186 ⟸ XM_039086258
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000105227 ⟸ ENSRNOT00000154904

Protein Domains

EGF-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V6D1-F1-model_v2	AlphaFold	G3V6D1	1-516	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696960

Promoter ID:

EPDNEW_R7485

Type:

multiple initiation site

Name:

Nagpa_1

Description:

N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	10,573,198 - 10,573,258	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308972	AgrOrtholog
BioCyc Gene	G2FUF-26062	BioCyc
Ensembl Genes	ENSRNOG00000002895	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003888	ENTREZGENE
	ENSRNOT00000003888.8	UniProtKB/TrEMBL
	ENSRNOT00000154904.1	UniProtKB/TrEMBL
Gene3D-CATH	Laminin	UniProtKB/TrEMBL
InterPro	EGF-like_dom	UniProtKB/TrEMBL
	Pdiester_a-GlcNAcase	UniProtKB/TrEMBL
KEGG Report	rno:360476	UniProtKB/TrEMBL
NCBI Gene	360476	ENTREZGENE
PANTHER	N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	UniProtKB/TrEMBL
	N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	UniProtKB/TrEMBL
Pfam	DUF2233	UniProtKB/TrEMBL
	EGF_Teneurin	UniProtKB/TrEMBL
PhenoGen	Nagpa	PhenoGen
PROSITE	EGF_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002895	RatGTEx
UniProt	A0ABK0LSP1_RAT	UniProtKB/TrEMBL
	A6K4P0	ENTREZGENE, UniProtKB/TrEMBL
	B5DF88	ENTREZGENE, UniProtKB/TrEMBL
	G3V6D1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Nagpa	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	Nagpa_predicted	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Nagpa_predicted	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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