Zfp36l2 (zinc finger protein 36, C3H type-like 2) - Rat Genome Database

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Gene: Zfp36l2 (zinc finger protein 36, C3H type-like 2) Rattus norvegicus
Analyze
Symbol: Zfp36l2
Name: zinc finger protein 36, C3H type-like 2
RGD ID: 1308913
Description: Predicted to enable mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; hemopoiesis; and positive regulation of mRNA catabolic process. Predicted to act upstream of or within hemopoiesis and nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human ZFP36L2 (ZFP36 ring finger protein like 2); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: butyrate response factor 2; LOC100911319; LOC298765; mRNA decay activator protein ZFP36L2; zinc finger protein 36, C3H type-like 2-like; zinc finger protein 36, C3H1 type-like 2; zinc finger protein 36, C3H1 type-like 2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,242,622 - 16,246,662 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl616,242,610 - 16,246,653 (+)EnsemblGRCr8
mRatBN7.2610,490,032 - 10,494,073 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,490,032 - 10,494,064 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx610,779,999 - 10,784,038 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,089,396 - 11,093,435 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,606,427 - 10,610,467 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.067,417,416 - 7,423,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl67,417,425 - 7,421,456 (-)Ensemblrn6Rnor6.0
Rnor_5.067,357,978 - 7,362,018 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.467,530,948 - 7,534,988 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera610,197,149 - 10,215,766 (+)NCBICelera
RGSC_v3.167,532,812 - 7,534,988 (-)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3',5'-cyclic AMP  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
amphotericin B  (ISO)
azoxystrobin  (EXP)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper(II) chloride  (ISO)
crotonaldehyde  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cypermethrin  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
Ethylenethiourea  (EXP,ISO)
fenamidone  (ISO)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
menadione  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel sulfate  (ISO)
orphenadrine  (EXP)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
tamoxifen  (ISO)
tetrachloroethene  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IBA)
nucleus  (IEA,ISO)
P-body  (IEA)
ribonucleoprotein complex  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11796723   PMID:15467755   PMID:15814898   PMID:19633199   PMID:20166898   PMID:20506496   PMID:20622884   PMID:22367205   PMID:22658674   PMID:22701344   PMID:23748442   PMID:24733888  
PMID:25106868   PMID:27102483   PMID:27182009  


Genomics

Comparative Map Data
Zfp36l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,242,622 - 16,246,662 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl616,242,610 - 16,246,653 (+)EnsemblGRCr8
mRatBN7.2610,490,032 - 10,494,073 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,490,032 - 10,494,064 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx610,779,999 - 10,784,038 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,089,396 - 11,093,435 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,606,427 - 10,610,467 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.067,417,416 - 7,423,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl67,417,425 - 7,421,456 (-)Ensemblrn6Rnor6.0
Rnor_5.067,357,978 - 7,362,018 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.467,530,948 - 7,534,988 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera610,197,149 - 10,215,766 (+)NCBICelera
RGSC_v3.167,532,812 - 7,534,988 (-)NCBI
Cytogenetic Map6q12NCBI
ZFP36L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38243,222,402 - 43,226,606 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl243,222,402 - 43,226,606 (-)Ensemblhg38GRCh38
GRCh37243,449,541 - 43,453,745 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36243,304,210 - 43,307,249 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34243,362,356 - 43,365,396NCBI
Celera243,288,996 - 43,293,200 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef243,184,882 - 43,189,086 (-)NCBIHuRef
CHM1_1243,378,882 - 43,383,086 (-)NCBICHM1_1
T2T-CHM13v2.0243,227,768 - 43,231,972 (-)NCBIT2T-CHM13v2.0
Zfp36l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391784,491,352 - 84,495,375 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1784,491,359 - 84,495,375 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381784,183,924 - 84,187,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1784,183,931 - 84,187,947 (-)Ensemblmm10GRCm38
MGSCv371784,583,264 - 84,587,287 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361784,092,250 - 84,096,273 (-)NCBIMGSCv36mm8
Celera1788,544,344 - 88,548,368 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1755.02NCBI
Zfp36l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544110,467,608 - 10,469,885 (-)NCBIChiLan1.0ChiLan1.0
ZFP36L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21283,192,058 - 83,195,492 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A83,196,112 - 83,200,304 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A43,311,744 - 43,315,928 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A44,158,249 - 44,162,346 (-)NCBIPanPan1.1PanPan1.1panPan2
ZFP36L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,746,952 - 45,751,268 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,748,936 - 45,751,250 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1045,608,345 - 45,612,636 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01046,623,672 - 46,627,990 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1046,625,667 - 46,627,993 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11046,332,590 - 46,336,883 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01046,623,322 - 46,627,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,805,859 - 46,810,167 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zfp36l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,188,551 - 37,192,821 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365088,617,100 - 8,621,495 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365088,617,185 - 8,620,823 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP36L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl397,200,407 - 97,204,698 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1397,200,395 - 97,203,094 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23103,259,048 - 103,263,356 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP36L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,019,633 - 64,022,301 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1464,019,418 - 64,026,281 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604547,878,327 - 47,882,579 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp36l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473824,744,213 - 24,747,591 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473824,743,388 - 24,747,572 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zfp36l2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v178,753,221 - 8,757,397 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp36l2
20 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:646
Count of miRNA genes:297
Interacting mature miRNAs:388
Transcripts:ENSRNOT00000006725
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6120510098Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
D2S2709  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,493,917 - 10,494,064 (-)MAPPERmRatBN7.2
Rnor_6.067,417,425 - 7,417,571NCBIRnor6.0
Rnor_6.072,350,077 - 2,350,223NCBIRnor6.0
Rnor_5.067,357,987 - 7,358,133UniSTSRnor5.0
Rnor_5.072,327,993 - 2,328,139UniSTSRnor5.0
RGSC_v3.467,530,957 - 7,531,103UniSTSRGSC3.4
Celera610,202,798 - 10,202,944UniSTS
Cytogenetic Map6q12UniSTS
RH141450  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,492,607 - 10,492,792 (-)MAPPERmRatBN7.2
Rnor_6.072,351,348 - 2,351,532NCBIRnor6.0
Rnor_6.067,418,696 - 7,418,880NCBIRnor6.0
Rnor_5.067,359,258 - 7,359,442UniSTSRnor5.0
Rnor_5.072,329,264 - 2,329,448UniSTSRnor5.0
RGSC_v3.467,532,228 - 7,532,412UniSTSRGSC3.4
Celera610,201,489 - 10,201,673UniSTS
Cytogenetic Map6q12UniSTS
AW434453  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.072,329,946 - 2,330,138NCBIRnor5.0
Rnor_5.067,359,940 - 7,360,132NCBIRnor5.0
RGSC_v3.467,532,911 - 7,533,102UniSTSRGSC3.4
RGSC_v3.471,054,326 - 1,054,516UniSTSRGSC3.4
Cytogenetic Map7q11UniSTS
Cytogenetic Map6q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006725   ⟹   ENSRNOP00000006725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl616,242,610 - 16,246,653 (+)Ensembl
mRatBN7.2 Ensembl610,490,032 - 10,494,064 (+)Ensembl
Rnor_6.0 Ensembl67,417,425 - 7,421,456 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074873   ⟹   ENSRNOP00000066942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl72,351,933 - 2,353,875 (-)Ensembl
RefSeq Acc Id: NM_001036626   ⟹   NP_001031703
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,242,622 - 16,246,662 (+)NCBI
mRatBN7.2610,490,032 - 10,494,073 (+)NCBI
Rnor_6.067,417,416 - 7,421,456 (-)NCBI
Rnor_5.067,357,978 - 7,362,018 (-)NCBI
RGSC_v3.467,530,948 - 7,534,988 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765049   ⟹   XP_008763271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,242,767 - 16,246,662 (+)NCBI
mRatBN7.2610,490,176 - 10,494,073 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001031703 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763271 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM02702 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006725
  ENSRNOP00000006725.5
RefSeq Acc Id: NP_001031703   ⟸   NM_001036626
- UniProtKB: D3ZHK9 (UniProtKB/TrEMBL),   A6H9J7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006725   ⟸   ENSRNOT00000006725
RefSeq Acc Id: XP_008763271   ⟸   XM_008765049
- Peptide Label: isoform X1
- UniProtKB: A6H9J7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066942   ⟸   ENSRNOT00000074873
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHK9-F1-model_v2 AlphaFold D3ZHK9 1-482 view protein structure
AF-M0RBK3-F1-model_v2 AlphaFold M0RBK3 1-482 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694372
Promoter ID:EPDNEW_R4897
Type:multiple initiation site
Name:Zfp36l2_1
Description:zinc finger protein 36, C3H type-like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.067,421,466 - 7,421,526EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308913 AgrOrtholog
BioCyc Gene G2FUF-38635 BioCyc
Ensembl Genes ENSRNOG00000005067 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000050108 Ensembl
Ensembl Transcript ENSRNOT00000006725 ENTREZGENE
  ENSRNOT00000006725.7 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro Tis11B_N UniProtKB/TrEMBL
  ZFP36-like UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
NCBI Gene 298765 ENTREZGENE
PANTHER MRNA DECAY ACTIVATOR PROTEIN ZFP36L2 UniProtKB/TrEMBL
  PTHR12547 UniProtKB/TrEMBL
Pfam Tis11B_N UniProtKB/TrEMBL
  zf-CCCH UniProtKB/TrEMBL
PhenoGen Zfp36l2 PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005067 RatGTEx
  ENSRNOG00000050108 RatGTEx
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A6H9J7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHK9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zfp36l2  zinc finger protein 36, C3H type-like 2  LOC100911319  zinc finger protein 36, C3H1 type-like 2-like  Data merged from RGD:6493373 737654 PROVISIONAL
2013-05-24 Zfp36l2  zinc finger protein 36, C3H type-like 2  LOC100363714  zinc finger protein 36, C3H type-like 2-like  Data merged from RGD:2322437 1643240 APPROVED
2012-07-05 LOC100911319  zinc finger protein 36, C3H1 type-like 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100363714  zinc finger protein 36, C3H type-like 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Zfp36l2  zinc finger protein 36, C3H type-like 2  Zfp36l2_predicted  zinc finger protein 36, C3H type-like 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zfp36l2_predicted  zinc finger protein 36, C3H type-like 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED