Igsf11 (immunoglobulin superfamily, member 11) - Rat Genome Database

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Gene: Igsf11 (immunoglobulin superfamily, member 11) Rattus norvegicus
Analyze
Symbol: Igsf11
Name: immunoglobulin superfamily, member 11
RGD ID: 1308758
Description: Enables ionotropic glutamate receptor binding activity. Involved in maintenance of protein location; positive regulation of mini excitatory postsynaptic potential; and regulation of postsynaptic membrane neurotransmitter receptor levels. Located in excitatory synapse and postsynaptic density. Is active in glutamatergic synapse and postsynaptic density membrane. Orthologous to human IGSF11 (immunoglobulin superfamily member 11); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: immunoglobulin superfamily member 11; LOC303926; MGC94879
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,238,706 - 75,389,748 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1175,236,545 - 75,390,425 (-)EnsemblGRCr8
mRatBN7.21161,733,139 - 61,884,059 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,733,144 - 61,868,348 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1170,545,627 - 70,680,918 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,207,868 - 63,343,161 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,267,118 - 62,402,287 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,286,691 - 64,421,248 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,286,694 - 64,421,248 (-)Ensemblrn6Rnor6.0
Rnor_5.01167,664,964 - 67,819,751 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41163,501,592 - 63,640,441 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1161,239,980 - 61,376,445 (-)NCBICelera
RGSC_v3.11163,559,183 - 63,698,030 (-)NCBI
Cytogenetic Map11q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,7-dihydropurine-6-thione  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cyclosporin A  (ISO)
dorsomorphin  (ISO)
emodin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
etoposide  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
mercaptopurine  (EXP)
methapyrilene  (EXP,ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
purine-6-thiol  (EXP)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Synaptic adhesion molecule IgSF11 regulates synaptic transmission and plasticity. Jang S, etal., Nat Neurosci. 2016 Jan;19(1):84-93. doi: 10.1038/nn.4176. Epub 2015 Nov 23.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. Identification of immunoglobulin superfamily 11 (IGSF11) as a novel target for cancer immunotherapy of gastrointestinal and hepatocellular carcinomas. Watanabe T, etal., Cancer Sci. 2005 Aug;96(8):498-506. doi: 10.1111/j.1349-7006.2005.00073.x.
Additional References at PubMed
PMID:15795899   PMID:23376485  


Genomics

Comparative Map Data
Igsf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,238,706 - 75,389,748 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1175,236,545 - 75,390,425 (-)EnsemblGRCr8
mRatBN7.21161,733,139 - 61,884,059 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,733,144 - 61,868,348 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1170,545,627 - 70,680,918 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,207,868 - 63,343,161 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,267,118 - 62,402,287 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,286,691 - 64,421,248 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,286,694 - 64,421,248 (-)Ensemblrn6Rnor6.0
Rnor_5.01167,664,964 - 67,819,751 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41163,501,592 - 63,640,441 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1161,239,980 - 61,376,445 (-)NCBICelera
RGSC_v3.11163,559,183 - 63,698,030 (-)NCBI
Cytogenetic Map11q21NCBI
IGSF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383118,900,557 - 119,146,020 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3118,900,557 - 119,146,068 (-)Ensemblhg38GRCh38
GRCh373118,619,404 - 118,864,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,102,167 - 120,347,588 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343120,103,690 - 120,347,381NCBI
Celera3117,027,981 - 117,273,390 (-)NCBICelera
Cytogenetic Map3q13.32NCBI
HuRef3115,994,852 - 116,240,345 (-)NCBIHuRef
CHM1_13118,582,961 - 118,828,367 (-)NCBICHM1_1
T2T-CHM13v2.03121,620,300 - 121,865,755 (-)NCBIT2T-CHM13v2.0
Igsf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,712,840 - 38,847,521 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,713,033 - 38,847,521 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381638,892,476 - 39,027,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,892,671 - 39,027,159 (+)Ensemblmm10GRCm38
MGSCv371638,902,458 - 39,027,272 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361638,821,677 - 38,946,491 (+)NCBIMGSCv36mm8
Celera1639,299,325 - 39,427,101 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.87NCBI
Igsf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542718,696,888 - 18,716,896 (-)Ensembl
ChiLan1.0NW_00495542718,698,774 - 18,716,669 (-)NCBIChiLan1.0ChiLan1.0
IGSF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22116,654,937 - 117,118,355 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13116,659,715 - 117,123,133 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,033,187 - 116,153,134 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13122,946,368 - 123,143,485 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3122,948,246 - 122,972,742 (-)EnsemblpanPan2panpan1.1
IGSF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13322,641,370 - 22,825,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3322,641,648 - 22,840,745 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3322,672,401 - 22,857,892 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03322,879,886 - 23,063,960 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3322,879,886 - 23,078,732 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13322,682,795 - 22,867,083 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03322,720,335 - 22,904,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,287,228 - 23,471,806 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Igsf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,383,976 - 131,574,044 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365365,949,780 - 6,090,199 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365365,947,915 - 6,090,004 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGSF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13141,093,021 - 141,289,496 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113141,148,489 - 141,289,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,586,617 - 150,616,187 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IGSF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,708,162 - 61,916,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,797,938 - 61,916,787 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041104,425,302 - 104,449,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igsf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473129,109,879 - 29,276,256 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473129,109,803 - 29,272,322 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Igsf11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1423,819,457 - 23,945,900 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Igsf11
765 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:389
Count of miRNA genes:216
Interacting mature miRNAs:263
Transcripts:ENSRNOT00000066997
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat

Markers in Region
D11Got45  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21161,802,042 - 61,802,238 (+)MAPPERmRatBN7.2
Rnor_6.01164,355,595 - 64,355,790NCBIRnor6.0
Rnor_5.01167,751,094 - 67,751,289UniSTSRnor5.0
RGSC_v3.41163,571,872 - 63,572,068RGDRGSC3.4
RGSC_v3.41163,571,873 - 63,572,068UniSTSRGSC3.4
Celera1161,310,746 - 61,310,941UniSTS
RGSC_v3.11163,629,462 - 63,629,657RGD
RH 3.4 Map11505.6UniSTS
RH 3.4 Map11505.6RGD
RH 2.0 Map11208.5RGD
Cytogenetic Map11q21UniSTS
RH133505  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21161,799,477 - 61,799,677 (+)MAPPERmRatBN7.2
Rnor_6.01164,353,030 - 64,353,229NCBIRnor6.0
Rnor_5.01167,753,655 - 67,753,854UniSTSRnor5.0
RGSC_v3.41163,569,308 - 63,569,507UniSTSRGSC3.4
Celera1161,308,181 - 61,308,380UniSTS
RH 3.4 Map11502.1UniSTS
Cytogenetic Map11q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 38 59 6 302 138 10 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000066997   ⟹   ENSRNOP00000059779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,238,711 - 75,373,904 (-)Ensembl
mRatBN7.2 Ensembl1161,733,144 - 61,868,348 (-)Ensembl
Rnor_6.0 Ensembl1164,286,694 - 64,421,248 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000124458   ⟹   ENSRNOP00000105601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,238,711 - 75,390,425 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000126295   ⟹   ENSRNOP00000098793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,236,545 - 75,373,904 (-)Ensembl
RefSeq Acc Id: NM_001013120   ⟹   NP_001013138
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,238,706 - 75,373,904 (-)NCBI
mRatBN7.21161,733,139 - 61,868,348 (-)NCBI
Rnor_6.01164,286,691 - 64,421,248 (-)NCBI
Rnor_5.01167,664,964 - 67,819,751 (+)NCBI
RGSC_v3.41163,501,592 - 63,640,441 (-)RGD
Celera1161,239,980 - 61,376,445 (-)RGD
Sequence:
RefSeq Acc Id: XM_039088359   ⟹   XP_038944287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,238,706 - 75,389,695 (-)NCBI
mRatBN7.21161,733,139 - 61,884,059 (-)NCBI
RefSeq Acc Id: XM_039088360   ⟹   XP_038944288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,238,706 - 75,316,772 (-)NCBI
mRatBN7.21161,733,139 - 61,804,743 (-)NCBI
RefSeq Acc Id: XM_063270528   ⟹   XP_063126598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,238,706 - 75,389,748 (-)NCBI
RefSeq Acc Id: XM_063270529   ⟹   XP_063126599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,243,728 - 75,373,963 (-)NCBI
RefSeq Acc Id: XM_063270530   ⟹   XP_063126600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,243,484 - 75,373,961 (-)NCBI
RefSeq Acc Id: NP_001013138   ⟸   NM_001013120
- Peptide Label: precursor
- UniProtKB: Q5U2P2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059779   ⟸   ENSRNOT00000066997
RefSeq Acc Id: XP_038944287   ⟸   XM_039088359
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944288   ⟸   XM_039088360
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126598   ⟸   XM_063270528
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126600   ⟸   XM_063270530
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126599   ⟸   XM_063270529
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000098793   ⟸   ENSRNOT00000126295
Ensembl Acc Id: ENSRNOP00000105601   ⟸   ENSRNOT00000124458
Protein Domains
Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2P2-F1-model_v2 AlphaFold Q5U2P2 1-428 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698158
Promoter ID:EPDNEW_R8683
Type:initiation region
Name:Igsf11_1
Description:immunoglobulin superfamily, member 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01164,421,227 - 64,421,287EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308758 AgrOrtholog
BioCyc Gene G2FUF-21290 BioCyc
Ensembl Genes ENSRNOG00000001525 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000066997 ENTREZGENE
  ENSRNOT00000066997.3 UniProtKB/Swiss-Prot
  ENSRNOT00000124458 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7110445 IMAGE-MGC_LOAD
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
  IGSF11 UniProtKB/Swiss-Prot
KEGG Report rno:303926 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94879 IMAGE-MGC_LOAD
NCBI Gene 303926 ENTREZGENE
PANTHER IMMUNOGLOBULIN SUPERFAMILY MEMBER 11 UniProtKB/Swiss-Prot
  PTHR44699 UniProtKB/Swiss-Prot
Pfam Ig_3 UniProtKB/Swiss-Prot
  V-set UniProtKB/Swiss-Prot
PhenoGen Igsf11 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001525 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt A0ABK0L6J1_RAT UniProtKB/TrEMBL
  A0ABK0LDM3_RAT UniProtKB/TrEMBL
  IGS11_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Igsf11  immunoglobulin superfamily, member 11  Igsf11_predicted  immunoglobulin superfamily, member 11 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Igsf11_predicted  immunoglobulin superfamily, member 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED