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Gene: Ccdc102a (coiled-coil domain containing 102A) Rattus norvegicus

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Symbol:

Ccdc102a

Name:

coiled-coil domain containing 102A

RGD ID:

1308684

Description:

Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 102A; LOC361363; RGD1308684; similar to hypothetical protein LOC92922

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC102A (coiled-coil domain containing 102A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ccdc102a (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc102a (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC102A (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC102A (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc102a (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC102A (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC102A (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc102a (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc102a (coiled-coil domain containing 102A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KHNYN (KH and NYN domain containing)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ccdc102a (coiled-coil domain containing 102A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC102A (coiled-coil domain containing 102A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc102a (coiled-coil domain containing 102A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31638	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31638	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F53F10.1	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	ccdc102a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,108,553 - 10,124,652 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	10,109,364 - 10,124,652 (+)	Ensembl				GRCr8
mRatBN7.2	19	10,102,543 - 10,118,657 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,103,361 - 10,118,657 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	10,067,467 - 10,082,844 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,834,312 - 10,849,689 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,121,262 - 10,136,640 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,518,822 - 10,535,162 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,519,493 - 10,535,162 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	10,515,600 - 10,531,535 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	10,540,236 - 10,558,485 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,990,082 - 10,005,355 (+)	NCBI		Celera
RGSC_v3.1	19	10,548,830 - 10,562,918 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cisplatin (ISO)

coumarin (ISO)

Cuprizon (EXP)

cytarabine (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

fipronil (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

paracetamol (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulforaphane (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

myosin complex (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ccdc102a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	10,108,553 - 10,124,652 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	10,109,364 - 10,124,652 (+)	Ensembl				GRCr8
mRatBN7.2	19	10,102,543 - 10,118,657 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	10,103,361 - 10,118,657 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	10,067,467 - 10,082,844 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,834,312 - 10,849,689 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	10,121,262 - 10,136,640 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,518,822 - 10,535,162 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,519,493 - 10,535,162 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	10,515,600 - 10,531,535 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	10,540,236 - 10,558,485 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,990,082 - 10,005,355 (+)	NCBI		Celera
RGSC_v3.1	19	10,548,830 - 10,562,918 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

CCDC102A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	57,512,181 - 57,537,016 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	57,511,999 - 57,537,163 (-)	Ensembl			hg38	GRCh38
GRCh37	16	57,546,093 - 57,570,483 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,103,591 - 56,127,978 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	42,046,911 - 42,071,294 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,413,675 - 43,437,966 (-)	NCBI		HuRef
CHM1_1	16	58,954,127 - 58,978,514 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,307,389 - 63,331,765 (-)	NCBI		T2T-CHM13v2.0

Ccdc102a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	95,629,497 - 95,644,726 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	95,629,497 - 95,644,726 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	94,902,869 - 94,918,098 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	94,902,869 - 94,918,098 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	97,426,769 - 97,441,998 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	97,792,000 - 97,807,184 (-)	NCBI		MGSCv36	mm8
Celera	8	99,226,816 - 99,242,097 (-)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	46.99	NCBI

Ccdc102a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,138,289 - 15,157,149 (-)	Ensembl
ChiLan1.0	NW_004955433	15,138,379 - 15,150,041 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC102A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	66,982,461 - 67,006,310 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	72,903,362 - 72,928,475 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	37,788,129 - 37,813,384 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	56,921,212 - 56,946,141 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CCDC102A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,907,172 - 58,921,929 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,906,887 - 58,920,119 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,528,150 - 55,550,323 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	59,436,996 - 59,459,187 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	59,445,288 - 59,458,546 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	56,268,378 - 56,290,566 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	57,276,120 - 57,298,276 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	58,169,517 - 58,191,719 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc102a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	50,014,380 - 50,025,967 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	9,563,104 - 9,573,990 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	9,563,108 - 9,573,954 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC102A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,437,169 - 19,456,905 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	19,436,379 - 19,456,995 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,426,948 - 17,447,546 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC102A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,446,218 - 43,469,473 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,445,373 - 43,461,426 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	32,748,337 - 32,771,747 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc102a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,552,104 - 28,570,321 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	28,551,161 - 28,568,664 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc102a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	1,780,474 - 1,796,087 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc102a
129 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	160
Count of miRNA genes:	120
Interacting mature miRNAs:	134
Transcripts:	ENSRNOT00000030229
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH138763

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	10,109,196 - 10,109,384 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	10,525,323 - 10,525,510	NCBI	Rnor6.0
Rnor_5.0	19	10,522,086 - 10,522,273	UniSTS	Rnor5.0
RGSC_v3.4	19	10,546,370 - 10,546,557	UniSTS	RGSC3.4
Celera	19	9,995,881 - 9,996,068	UniSTS
RH 3.4 Map	19	93.81	UniSTS
Cytogenetic Map	19	p13	UniSTS

RH139623

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	10,118,219 - 10,118,405 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	10,534,725 - 10,534,910	NCBI	Rnor6.0
Rnor_5.0	19	10,531,098 - 10,531,283	UniSTS	Rnor5.0
RGSC_v3.4	19	10,558,048 - 10,558,233	UniSTS	RGSC3.4
Celera	19	10,004,918 - 10,005,103	UniSTS
RH 3.4 Map	19	94.58	UniSTS
Cytogenetic Map	19	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030229 ⟹ ENSRNOP00000035778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	10,109,364 - 10,124,652 (+)	Ensembl
mRatBN7.2 Ensembl	19	10,103,361 - 10,118,657 (+)	Ensembl
Rnor_6.0 Ensembl	19	10,519,493 - 10,535,162 (+)	Ensembl

RefSeq Acc Id:

NM_001108437 ⟹ NP_001101907

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,109,364 - 10,124,652 (+)	NCBI
mRatBN7.2	19	10,103,361 - 10,118,657 (+)	NCBI
Rnor_6.0	19	10,519,493 - 10,535,162 (+)	NCBI
Rnor_5.0	19	10,515,600 - 10,531,535 (+)	NCBI
RGSC_v3.4	19	10,540,236 - 10,558,485 (+)	RGD
Celera	19	9,990,082 - 10,005,355 (+)	RGD

Sequence:

show sequence

GGCAAGTGGGGCAAGGGCTTGATGCTAAGAGAAAGGAGGGGCCTCAGCAGCCCATTTCCCTGGT
AGTACTGAGGGGTAGCAGCGCTCTTGCCCATCCCGCGACTTAAGCTTGTGTCTGAAGAGACATT
CCAGAGTATCCTAGAGAGCAGTGGGTCAAGGCTTTCGTCACTCGCAGTGGTATCATGTAGGTGT
CTGTCCCACGCGTCGTCCTTGAGCCTAGCCGCAAGTTCGCACCCAGGGCCAGCCCAGCCTCACT
ATGAGCCACGGCCCGAGCCCCCGGCTGGCTGAGTCCCCGCAGCTGTCCAAGAGCAGCCTGCTTA
CCATCCTGGGCAGCCCGTCCCCGGAGCGCATGGGCCCGGCCGACTCGCTGCCACCCACGCCGCC
TAGCGGCACTCCATCACCCGGACCACCACCCACACTACCCTTGACTGCGCCCGCACTGCTGGCC
GACGGCGACTGGGAGAGCCGCGAGGAGCTGCGGCTGCGGGAGCTGGAGGAGGCGCGCGCCCGAG
CCTTGCAGATGGAGAAAACAATGCGCTGGTGGTCGGACTGCACGGCGAACTGGCGCGAGAAGTG
GAGCAAGGTGCGCGCTGAGCGCAACCGTGCGCGGGAAGAGGTTCGCCAGCTGCGCCAGCGCCTG
GACACGCTCACCAAGGAGTTGGCGGGCGCGCGCCGCGAGCGCCAGGAGGCTCAGGGCGAATGCG
AGGCGCGCGGCCGCGAGCTGGCCCGGCTGCGGGGAGCGCGCGGTGCTGCAGACAAGACACATGA
AGGCCCGGAGGCGGAACGCGAGCACGAGCCAGTGCGGGACATCGGGGCGGAGAGGTCGCCTGGC
AGCCAGGAGCTGGACCTGGTAGAGAGCCTGCTGAAGAGCAGACCAGAGGAGCTTGAGGGCTCCT
GGGATGCCTGCAGTGTGGCAGCTGGGGGCTCTCGGGTCAGCTCCGGACGCCAGGATCGCAACCG
CCTGCCCTGGGAGGACACAGCCGGCACAGAGGAGGATACCTCCAAGTTGACCGCCCTTCGGCTA
CGGCTAGATGAATCCCAGAAGGTTCTCCTCAAGGAGCGAGAGGATAAGCTGGCTTTGAGCAAGA
ACATCGAGAAGCTGGAGGGGGAGCTTAGCCAATGGAAGATCAAATACGAGGAGTTGAGCAAAAC
CAAGCAGGAGATGCTCAAGCAACTCAGCATCCTAAAGGAGACGCACCAGGATGAACTGGGCCGC
ATGTCGGAAGACCTGGAAGATGAACTGGGTGCACGCTCTAGCATGGATCGCAAGATGGCCGAGC
TGAGGGGTGAGATGGAAAGGCTCCAGGCGGAGAATGCAGCCGAGTGGGGCCGCAGAGAGCGGCT
GGAGACGGAGAAGCTGGGCCTGGAACGGGAGAACAAGAAGCTGCGTGCGCAGGTTGGGGACCTG
GAGGAGGCCCTGGCCCGCAGACGACGACAGAACGCCAGTGCCCTGGACTGTGACCTGAGGGCCA
GCCAGGCCGCCCTTTTCGAGAAGAACAAGGAGCTGGCAGACCTGAAGCACGTGCACAGCAAGCT
CAAGAAGCAGTTCCAGGAGAAGGTGGCCGAGCTGGCACACGCCAATCGGCGCGTGGAGCAGCAC
GAGACGGAGGTAAAGAAGCTGAGGCTGCGGGTGGAAGAGCTCAAGAAAGAACTGGCCCAGGCTG
AGGATGAGCTGGACGAGGCCCACAACCAGGCACGGAAGCTGCAACGGTCGCTGGACGAGCAGAC
GGAGCAGAGCGAGAACCTACAGGTGCAGCTGGAACATCTGCAGTCCAGGCTCCGCAGGCAGCAG
CAAAATGCCCCCCTTTTTGGGAAGATTCGGAGTACCCGGTTTGGCACCGAGGAAGCCGGAGATG
GAGCGAGCGACCTAGATGAGGATGAGGACCTGCAAATCCAGGTGGCCTAGGACATCCAGGCAGA
ACAGGACTGGCCCACAGATGCCCAGCTGAGCATCCACTCAAACCAGATGGCCTTCTTCACTGTC
TGTACTTGCTTGGGTTCCATTCCCCCCTACACACACCCCGCTTTGAACCACTTCCTCCTCTCCC
AGGAGGGCAGCAGTTTCACCCACTTTCGCCCCAGTGAAGGGGGAGCCTGTCGGATATGTATATT
TTATATATGCCCAGGGTTGCTTGAACCCATCCAAACAACCCAGCACCCAGATCTTAAGACCCTA
CCTGCATAGGACTTCATGCAGAGATGGGACCATGGTGAGGGAGGCTTGGTGGTCTGGAAGGGGA
TGTTCATATTAAGACACTATGAACTCAGACTTTTGTAATAAATGGACTTCAATCTCTCA

hide sequence

RefSeq Acc Id:

XM_006255116 ⟹ XP_006255178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,108,600 - 10,124,652 (+)	NCBI
mRatBN7.2	19	10,102,588 - 10,118,657 (+)	NCBI
Rnor_6.0	19	10,518,822 - 10,535,162 (+)	NCBI
Rnor_5.0	19	10,515,600 - 10,531,535 (+)	NCBI

Sequence:

show sequence

GAGGAGACTCGGCGGCCCTCCCCCGGCCTCCCGACGGCCGCCGCAGCCAGCCCCGCGCCCTCTC
CACCCAGAGCAACAGCTCGGACGTCCGGAATCCCGGCCCTGGCCCTAGGTCTGAAGAGACATTC
CAGAGTATCCTAGAGAGCAGTGGGTCAAGGCTTTCGTCACTCGCAGTGGTATCATGTAGGTGTC
TGTCCCACGCGTCGTCCTTGAGCCTAGCCGCAAGTTCGCACCCAGGGCCAGCCCAGCCTCACTA
TGAGCCACGGCCCGAGCCCCCGGCTGGCTGAGTCCCCGCAGCTGTCCAAGAGCAGCCTGCTTAC
CATCCTGGGCAGCCCGTCCCCGGAGCGCATGGGCCCGGCCGACTCGCTGCCACCCACGCCGCCT
AGCGGCACTCCATCACCCGGACCACCACCCACACTACCCTTGACTGCGCCCGCACTGCTGGCCG
ACGGCGACTGGGAGAGCCGCGAGGAGCTGCGGCTGCGGGAGCTGGAGGAGGCGCGCGCCCGAGC
CTTGCAGATGGAGAAAACAATGCGCTGGTGGTCGGACTGCACGGCGAACTGGCGCGAGAAGTGG
AGCAAGGTGCGCGCTGAGCGCAACCGTGCGCGGGAAGAGGTTCGCCAGCTGCGCCAGCGCCTGG
ACACGCTCACCAAGGAGTTGGCGGGCGCGCGCCGCGAGCGCCAGGAGGCTCAGGGCGAATGCGA
GGCGCGCGGCCGCGAGCTGGCCCGGCTGCGGGGAGCGCGCGGTGCTGCAGACAAGACACAGGAA
GGCCCGGAGGCGGAACGCGAGCACGAGCCAGTGCGGGACATCGGGGCGGAGAGGTCGCCTGGCA
GCCAGGAGCTGGACCTGGTAGAGAGCCTGCTGAAGAGCAGACCAGAGGAGCTTGAGGGCTGCTG
GGATGCCTGCAGTGTGGCAGCTGGGGGCTCTCGGGTCAGCTCCGGACGCCAGGATCGCAACCGC
CTGCCCTGGGAGGACACAGCCGGCACAGAGGAGGATACCTCCAAGTTGACCGCCCTTCGGCTAC
GGCTAGATGAATCCCAGAAGGTTCTCCTCAAGGAGCGAGAGGATAAGCTGGCTTTGAGCAAGAA
CATCGAGAAGCTGGAGGGGGAGCTTAGCCAATGGAAGATCAAATACGAGGAGTTGAGCAAAACC
AAGCAGGAGATGCTCAAGCAACTCAGCATCCTAAAGGAGACGCACCAGGATGAACTGGGCCGCA
TGTCGGAAGACCTGGAAGATGAACTGGGTGCACGCTCTAGCATGGATCGCAAGATGGCCGAGCT
GAGGGGTGAGATGGAAAGGCTCCAGGCGGAGAATGCAGCCGAGTGGGGCCGCAGAGAGCGGCTG
GAGACGGAGAAGCTGGGCCTGGAACGGGAGAACAAGAAGCTGCGTGCGCAGGTTGGGGACCTGG
AGGAGGCCCTGGCCCGCAGACGACGACAGAACGCCAGTGCCCTGGACTGTGACCTGAGGGCCAG
CCAGGCCGCCCTTTTCGAGAAGAACAAGGAGCTGGCAGACCTGAAGCACGTGCACAGCAAGCTC
AAGAAGCAGTTCCAGGAGAAGGTGGCCGAGCTGGCACACGCCAATCGGCGCGTGGAGCAGCACG
AGACGGAGGTAAAGAAGCTGAGGCTGCGGGTGGAAGAGCTCAAGAAAGAACTGGCCCAGGCTGA
GGATGAGCTGGACGAGGCCCACAACCAGGCACGGAAGCTGCAACGGTCGCTGGACGAGCAGACG
GAGCAGAGCGAGAACCTACAGGTGCAGCTGGAACATCTGCAGTCCAGGCTCCGCAGGCAGCAGC
AAAATGCCCCCCTTTTTGGGAAGATTCGGAGTACCCGGTTTGGCACCGAGGAAGCCGGAGATGG
AGCGAGCGACCTAGATGAGGATGAGGACCTGCAAATCCAGGTGGCCTAGGACATCCAGGCAGAA
CAGGACTGGCCCACAGATGCCCAGCTGAGCATCCACTCAAACCAGATGGCCTTCTTCACTGTCT
GTACTTGCTTGGGTTCCATTCCCCCCTACACACACCCCGCTTTGAACCACTTCCTCCTCTCCCA
GGAGGGCAGCAGTTTCACCCACTTTCGCCCCAGTGAAGGGGGAGCCTGTCGGATATGTATATTT
TATATATGCCCAGGGTTGCTTGAACCCATCCAAACAACCCAGCACCCAGATCTTAAGACCCTAC
CTGCATAGGACTTCATGCAGAGATGGGACCATGGTGAGGGAGGCTTGGTGGTCTGGAAGGGGAT
GTTCATATTAAGACACTATGAACTCAGACTTTTGTAATAAATGGACTTCAATCTCTCA

hide sequence

RefSeq Acc Id:

XM_039097808 ⟹ XP_038953736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,108,599 - 10,124,652 (+)	NCBI
mRatBN7.2	19	10,102,588 - 10,118,657 (+)	NCBI

RefSeq Acc Id:

XM_039097809 ⟹ XP_038953737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,108,553 - 10,119,502 (+)	NCBI
mRatBN7.2	19	10,102,543 - 10,113,508 (+)	NCBI

RefSeq Acc Id:

XM_063278103 ⟹ XP_063134173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	10,108,561 - 10,121,004 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101907	(Get FASTA)	NCBI Sequence Viewer
	NP_001421509	(Get FASTA)	NCBI Sequence Viewer
	NP_001421510	(Get FASTA)	NCBI Sequence Viewer
	XP_006255178	(Get FASTA)	NCBI Sequence Viewer
	XP_038953736	(Get FASTA)	NCBI Sequence Viewer
	XP_038953737	(Get FASTA)	NCBI Sequence Viewer
	XP_063134173	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87314	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035778
	ENSRNOP00000035778.6

RefSeq Acc Id:

NP_001101907 ⟸ NM_001108437

- UniProtKB:

A6JY36 (UniProtKB/TrEMBL), D3ZSR7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSHGPSPRLAESPQLSKSSLLTILGSPSPERMGPADSLPPTPPSGTPSPGPPPTLPLTAPALLA
DGDWESREELRLRELEEARARALQMEKTMRWWSDCTANWREKWSKVRAERNRAREEVRQLRQRL
DTLTKELAGARRERQEAQGECEARGRELARLRGARGAADKTHEGPEAEREHEPVRDIGAERSPG
SQELDLVESLLKSRPEELEGSWDACSVAAGGSRVSSGRQDRNRLPWEDTAGTEEDTSKLTALRL
RLDESQKVLLKEREDKLALSKNIEKLEGELSQWKIKYEELSKTKQEMLKQLSILKETHQDELGR
MSEDLEDELGARSSMDRKMAELRGEMERLQAENAAEWGRRERLETEKLGLERENKKLRAQVGDL
EEALARRRRQNASALDCDLRASQAALFEKNKELADLKHVHSKLKKQFQEKVAELAHANRRVEQH
ETEVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQTEQSENLQVQLEHLQSRLRRQQ
QNAPLFGKIRSTRFGTEEAGDGASDLDEDEDLQIQVA

hide sequence

RefSeq Acc Id:

XP_006255178 ⟸ XM_006255116

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSHGPSPRLAESPQLSKSSLLTILGSPSPERMGPADSLPPTPPSGTPSPGPPPTLPLTAPALLA
DGDWESREELRLRELEEARARALQMEKTMRWWSDCTANWREKWSKVRAERNRAREEVRQLRQRL
DTLTKELAGARRERQEAQGECEARGRELARLRGARGAADKTQEGPEAEREHEPVRDIGAERSPG
SQELDLVESLLKSRPEELEGCWDACSVAAGGSRVSSGRQDRNRLPWEDTAGTEEDTSKLTALRL
RLDESQKVLLKEREDKLALSKNIEKLEGELSQWKIKYEELSKTKQEMLKQLSILKETHQDELGR
MSEDLEDELGARSSMDRKMAELRGEMERLQAENAAEWGRRERLETEKLGLERENKKLRAQVGDL
EEALARRRRQNASALDCDLRASQAALFEKNKELADLKHVHSKLKKQFQEKVAELAHANRRVEQH
ETEVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQTEQSENLQVQLEHLQSRLRRQQ
QNAPLFGKIRSTRFGTEEAGDGASDLDEDEDLQIQVA

hide sequence

Ensembl Acc Id:

ENSRNOP00000035778 ⟸ ENSRNOT00000030229

RefSeq Acc Id:	XP_038953737 ⟸ XM_039097809
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038953736 ⟸ XM_039097808
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063134173 ⟸ XM_063278103
- Peptide Label:	isoform X2

Protein Domains

Myosin tail

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSR7-F1-model_v2	AlphaFold	D3ZSR7	1-549	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308684	AgrOrtholog
BioCyc Gene	G2FUF-6519	BioCyc
Ensembl Genes	ENSRNOG00000025843	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030229	ENTREZGENE
	ENSRNOT00000030229.8	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.340	UniProtKB/TrEMBL
	6.10.250.2420	UniProtKB/TrEMBL
InterPro	Myosin_tail	UniProtKB/TrEMBL
KEGG Report	rno:361363	UniProtKB/TrEMBL
NCBI Gene	361363	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 102A	UniProtKB/TrEMBL
	COILED-COIL DOMAIN-CONTAINING PROTEIN 102A	UniProtKB/TrEMBL
Pfam	Myosin_tail_1	UniProtKB/TrEMBL
PhenoGen	Ccdc102a	PhenoGen
RatGTEx	ENSRNOG00000025843	RatGTEx
Superfamily-SCOP	Myosin rod fragments	UniProtKB/TrEMBL
UniProt	A6JY36	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSR7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-26	Ccdc102a	coiled-coil domain containing 102A	RGD1308684_predicted	similar to hypothetical protein LOC92922 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1308684_predicted	similar to hypothetical protein LOC92922 (predicted)	LOC361363_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361363_predicted	similar to hypothetical protein LOC92922 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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