Osgep (O-sialoglycoprotein endopeptidase) - Rat Genome Database

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Gene: Osgep (O-sialoglycoprotein endopeptidase) Rattus norvegicus
Analyze
Symbol: Osgep
Name: O-sialoglycoprotein endopeptidase
RGD ID: 1308578
Description: Predicted to enable tRNA N(6)-L-threonylcarbamoyladenine synthase activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Predicted to act upstream of or within tRNA modification. Predicted to be located in nucleus. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 3. Orthologous to human OSGEP (O-sialoglycoprotein endopeptidase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC290028; N6-L-threonylcarbamoyladenine synthase; O-sialoglycoprotease; pasteurella haemolytica metalloprotease homolog with glycoprotein substrates/gpc-like protein 1; probable O-sialoglycoprotein endopeptidase; probable tRNA N6-adenosine threonylcarbamoyltransferase; probable tRNA threonylcarbamoyladenosine biosynthesis protein Osgep; Prsmg1/Gcpl1; t(6)A synthase; t(6)A37 threonylcarbamoyladenosine biosynthesis protein Osgep; tRNA N6-adenosine threonylcarbamoyltransferase; tRNA threonylcarbamoyladenosine biosynthesis protein Osgep
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,610,694 - 26,618,113 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1526,610,698 - 26,618,113 (-)EnsemblGRCr8
mRatBN7.21524,137,149 - 24,144,568 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,137,153 - 24,144,568 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1526,908,335 - 26,915,754 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,867,039 - 27,874,458 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,116,878 - 26,124,297 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,842,447 - 27,849,866 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,842,422 - 27,849,974 (-)Ensemblrn6Rnor6.0
Rnor_5.01531,674,872 - 31,682,291 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,896,592 - 26,904,011 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1524,457,277 - 24,464,696 (-)NCBICelera
RGSC_v3.11526,912,465 - 26,919,623 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
cytosol  (IEA,ISO)
EKC/KEOPS complex  (IBA,IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8086453   PMID:10631378   PMID:12477932   PMID:27903914   PMID:28805828  


Genomics

Comparative Map Data
Osgep
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,610,694 - 26,618,113 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1526,610,698 - 26,618,113 (-)EnsemblGRCr8
mRatBN7.21524,137,149 - 24,144,568 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,137,153 - 24,144,568 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1526,908,335 - 26,915,754 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,867,039 - 27,874,458 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,116,878 - 26,124,297 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,842,447 - 27,849,866 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,842,422 - 27,849,974 (-)Ensemblrn6Rnor6.0
Rnor_5.01531,674,872 - 31,682,291 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,896,592 - 26,904,011 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1524,457,277 - 24,464,696 (-)NCBICelera
RGSC_v3.11526,912,465 - 26,919,623 (-)NCBI
Cytogenetic Map15p14NCBI
OSGEP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,446,401 - 20,454,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,446,401 - 20,455,089 (-)Ensemblhg38GRCh38
GRCh371420,914,560 - 20,922,971 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,985,056 - 19,993,038 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341419,985,055 - 19,993,038NCBI
Celera14776,357 - 784,417 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,036,962 - 1,044,886 (-)NCBIHuRef
CHM1_11420,916,587 - 20,924,647 (-)NCBICHM1_1
T2T-CHM13v2.01414,643,301 - 14,651,715 (-)NCBIT2T-CHM13v2.0
Osgep
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,152,831 - 51,162,350 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,143,935 - 51,162,350 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381450,915,374 - 50,924,893 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,906,478 - 50,924,893 (-)Ensemblmm10GRCm38
MGSCv371451,535,049 - 51,544,568 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361449,837,325 - 49,846,844 (-)NCBIMGSCv36mm8
Celera1447,206,136 - 47,224,482 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.3NCBI
Osgep
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,265,401 - 1,273,299 (-)Ensembl
ChiLan1.0NW_0049555501,266,191 - 1,273,093 (-)NCBIChiLan1.0ChiLan1.0
OSGEP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,956,556 - 21,964,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,173,043 - 21,181,122 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,321,599 - 1,329,604 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,373,836 - 19,381,888 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,373,836 - 19,381,888 (-)EnsemblpanPan2panpan1.1
OSGEP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,780,474 - 17,786,452 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,780,476 - 17,811,173 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1518,263,462 - 18,269,439 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01518,037,539 - 18,043,534 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,037,541 - 18,043,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,720,433 - 17,726,396 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,775,053 - 17,781,030 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,904,232 - 17,910,209 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Osgep
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,678,727 - 77,685,347 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877659,874 - 666,026 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936877659,881 - 666,169 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSGEP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,454,666 - 78,462,258 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1778,454,667 - 78,462,260 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,482,276 - 83,490,100 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSGEP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12920,960,710 - 20,969,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2920,960,378 - 20,968,903 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605925,451,480 - 25,460,413 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Osgep
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,714,993 - 4,721,884 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248254,715,133 - 4,721,884 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Osgep
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11272,390,594 - 72,398,047 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Osgep
76 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:92
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000012790
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 91 59 6 355 191 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012790   ⟹   ENSRNOP00000012789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1526,610,698 - 26,618,113 (-)Ensembl
mRatBN7.2 Ensembl1524,137,153 - 24,144,568 (-)Ensembl
Rnor_6.0 Ensembl1527,842,422 - 27,849,974 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097357   ⟹   ENSRNOP00000092779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1526,610,698 - 26,618,113 (-)Ensembl
mRatBN7.2 Ensembl1524,137,153 - 24,144,537 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000143463   ⟹   ENSRNOP00000100660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1526,610,698 - 26,618,113 (-)Ensembl
RefSeq Acc Id: NM_001100510   ⟹   NP_001093980
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81526,610,694 - 26,618,113 (-)NCBI
mRatBN7.21524,137,149 - 24,144,568 (-)NCBI
Rnor_6.01527,842,447 - 27,849,866 (-)NCBI
Rnor_5.01531,674,872 - 31,682,291 (-)NCBI
RGSC_v3.41526,896,592 - 26,904,011 (-)RGD
Celera1524,457,277 - 24,464,696 (-)RGD
Sequence:
RefSeq Acc Id: XM_039093106   ⟹   XP_038949034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81526,610,694 - 26,618,037 (-)NCBI
mRatBN7.21524,137,149 - 24,144,553 (-)NCBI
RefSeq Acc Id: XM_063274101   ⟹   XP_063130171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81526,610,694 - 26,618,044 (-)NCBI
RefSeq Acc Id: XR_005493700
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81526,612,241 - 26,618,041 (-)NCBI
mRatBN7.21524,137,149 - 24,144,559 (-)NCBI
RefSeq Acc Id: NP_001093980   ⟸   NM_001100510
- UniProtKB: B0BMW7 (UniProtKB/Swiss-Prot),   Q9WVS2 (UniProtKB/Swiss-Prot),   A0A8I6AEB6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012789   ⟸   ENSRNOT00000012790
RefSeq Acc Id: XP_038949034   ⟸   XM_039093106
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000092779   ⟸   ENSRNOT00000097357
RefSeq Acc Id: XP_063130171   ⟸   XM_063274101
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000100660   ⟸   ENSRNOT00000143463
Protein Domains
Gcp-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WVS2-F1-model_v2 AlphaFold Q9WVS2 1-335 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699624
Promoter ID:EPDNEW_R10146
Type:initiation region
Name:Osgep_1
Description:O-sialoglycoprotein endopeptidase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01527,849,891 - 27,849,951EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308578 AgrOrtholog
BioCyc Gene G2FUF-14052 BioCyc
Ensembl Genes ENSRNOG00000009333 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012790 ENTREZGENE
  ENSRNOT00000012790.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.420.40 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7126956 IMAGE-MGC_LOAD
  IMAGE:8362956 IMAGE-MGC_LOAD
InterPro ATPase_NBD UniProtKB/Swiss-Prot
  Gcp-like_dom UniProtKB/Swiss-Prot
  Kae1/OSGEP UniProtKB/Swiss-Prot
  KAE1/TsaD UniProtKB/Swiss-Prot
  Peptidase_M22_CS UniProtKB/Swiss-Prot
KEGG Report rno:290028 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187386 IMAGE-MGC_LOAD
  MGC:95102 IMAGE-MGC_LOAD
NCBI Gene 290028 ENTREZGENE
PANTHER PTHR11735 UniProtKB/Swiss-Prot
  PTHR11735:SF14 UniProtKB/Swiss-Prot
Pfam Peptidase_M22 UniProtKB/Swiss-Prot
PhenoGen Osgep PhenoGen
PRINTS OSIALOPTASE UniProtKB/Swiss-Prot
PROSITE GLYCOPROTEASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009333 RatGTEx
Superfamily-SCOP SSF53067 UniProtKB/Swiss-Prot
UniProt A0A8I6AEB6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LBU4_RAT UniProtKB/TrEMBL
  A6KEC0_RAT UniProtKB/TrEMBL
  B0BMW7 ENTREZGENE
  OSGEP_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B0BMW7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Osgep  O-sialoglycoprotein endopeptidase  Osgep_predicted  O-sialoglycoprotein endopeptidase (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Osgep_predicted  O-sialoglycoprotein endopeptidase (predicted)      Symbol and Name status set to approved 70820 APPROVED