Ddhd1 (DDHD domain containing 1) - Rat Genome Database

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Gene: Ddhd1 (DDHD domain containing 1) Rattus norvegicus
Analyze
Symbol: Ddhd1
Name: DDHD domain containing 1
RGD ID: 1308576
Description: Predicted to enable phospholipase activity. Predicted to act upstream of or within positive regulation of mitochondrial fission and sperm mitochondrion organization. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 28. Orthologous to human DDHD1 (DDHD domain containing 1); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305816; MGC125147; phospholipase DDHD1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81521,304,053 - 21,370,608 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1521,303,826 - 21,370,608 (-)EnsemblGRCr8
mRatBN7.21518,824,389 - 18,891,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1521,614,390 - 21,680,558 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01522,571,355 - 22,637,530 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01520,827,932 - 20,894,116 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,963,639 - 20,032,263 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,965,187 - 20,032,191 (-)Ensemblrn6Rnor6.0
Rnor_5.01523,928,012 - 23,996,629 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41521,500,775 - 21,569,296 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1519,250,159 - 19,316,711 (-)NCBICelera
RGSC_v3.11521,612,527 - 21,701,319 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP)
buspirone  (EXP)
caffeine  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium atom  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
levofloxacin  (EXP)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
metformin  (EXP)
methoxyacetic acid  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nevirapine  (EXP)
nicotinic acid  (ISO)
nimesulide  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24599962  


Genomics

Comparative Map Data
Ddhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81521,304,053 - 21,370,608 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1521,303,826 - 21,370,608 (-)EnsemblGRCr8
mRatBN7.21518,824,389 - 18,891,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1521,614,390 - 21,680,558 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01522,571,355 - 22,637,530 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01520,827,932 - 20,894,116 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,963,639 - 20,032,263 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,965,187 - 20,032,191 (-)Ensemblrn6Rnor6.0
Rnor_5.01523,928,012 - 23,996,629 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41521,500,775 - 21,569,296 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1519,250,159 - 19,316,711 (-)NCBICelera
RGSC_v3.11521,612,527 - 21,701,319 (-)NCBI
Cytogenetic Map15p14NCBI
DDHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381453,036,755 - 53,153,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1453,036,745 - 53,153,353 (-)Ensemblhg38GRCh38
GRCh371453,503,473 - 53,620,041 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361452,582,491 - 52,689,750 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341452,582,492 - 52,689,750NCBI
Celera1433,553,197 - 33,669,789 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1433,666,558 - 33,783,254 (-)NCBIHuRef
CHM1_11453,442,348 - 53,558,925 (-)NCBICHM1_1
T2T-CHM13v2.01447,244,731 - 47,361,295 (-)NCBIT2T-CHM13v2.0
Ddhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,830,628 - 45,895,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,825,924 - 45,895,600 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381445,593,171 - 45,658,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1445,588,467 - 45,658,143 (-)Ensemblmm10GRCm38
MGSCv371446,212,849 - 46,277,818 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361444,517,294 - 44,580,020 (-)NCBIMGSCv36mm8
Celera1441,777,214 - 41,851,208 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1423.14NCBI
Ddhd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,110,812 - 10,183,068 (+)Ensembl
ChiLan1.0NW_00495540910,111,299 - 10,185,603 (+)NCBIChiLan1.0ChiLan1.0
DDHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21554,175,078 - 54,289,704 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11453,391,590 - 53,503,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01433,640,543 - 33,752,343 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,922,230 - 52,032,780 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,922,230 - 52,032,780 (-)EnsemblpanPan2panpan1.1
DDHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1829,230,831 - 29,341,886 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl829,233,162 - 29,341,750 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha828,975,440 - 29,086,545 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0829,463,592 - 29,572,676 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl829,463,605 - 29,572,477 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1829,073,561 - 29,180,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0829,146,615 - 29,253,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0829,472,800 - 29,581,807 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ddhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,011,868 - 76,088,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366971,786,017 - 1,860,614 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366971,786,023 - 1,863,084 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1182,667,428 - 182,754,207 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11182,667,102 - 182,754,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21202,934,424 - 203,018,775 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12430,156,657 - 30,280,421 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2430,157,406 - 30,280,289 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605318,414,489 - 18,537,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddhd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,009,331 - 16,095,985 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473116,009,976 - 16,098,369 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ddhd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11277,377,990 - 77,443,682 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ddhd1
626 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:67
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000032704
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat

Markers in Region
BE121284  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21518,836,464 - 18,836,649 (+)MAPPERmRatBN7.2
Rnor_6.01519,977,258 - 19,977,442NCBIRnor6.0
Rnor_5.01523,941,631 - 23,941,815UniSTSRnor5.0
RGSC_v3.41521,512,849 - 21,513,033UniSTSRGSC3.4
Celera1519,262,233 - 19,262,417UniSTS
RH 3.4 Map15145.6UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
17 12 81 198 91 90 59 151 59 6 454 271 18 179 99 105 31 31 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC103649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032704   ⟹   ENSRNOP00000035399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1521,303,826 - 21,370,608 (-)Ensembl
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
Rnor_6.0 Ensembl1519,965,187 - 20,032,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102887   ⟹   ENSRNOP00000093499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1521,304,055 - 21,370,608 (-)Ensembl
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105389   ⟹   ENSRNOP00000076372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1518,824,507 - 18,890,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111596   ⟹   ENSRNOP00000092577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1521,303,826 - 21,370,608 (-)Ensembl
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114252   ⟹   ENSRNOP00000081184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1521,303,826 - 21,370,608 (-)Ensembl
mRatBN7.2 Ensembl1518,824,394 - 18,890,952 (-)Ensembl
RefSeq Acc Id: NM_001033066   ⟹   NP_001028238
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,055 - 21,370,608 (-)NCBI
mRatBN7.21518,824,391 - 18,890,952 (-)NCBI
Rnor_6.01519,965,184 - 20,032,191 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
RGSC_v3.41521,500,775 - 21,569,296 (-)RGD
Celera1519,250,159 - 19,316,711 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251769   ⟹   XP_006251831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,263 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251770   ⟹   XP_006251832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,263 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251772   ⟹   XP_006251834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,263 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251773   ⟹   XP_006251835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,262 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251774   ⟹   XP_006251836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
Rnor_6.01519,963,639 - 20,032,262 (-)NCBI
Rnor_5.01523,928,012 - 23,996,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093255   ⟹   XP_038949183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
mRatBN7.21518,824,389 - 18,891,036 (-)NCBI
RefSeq Acc Id: XM_039093257   ⟹   XP_038949185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,319,642 - 21,370,539 (-)NCBI
mRatBN7.21518,840,009 - 18,891,036 (-)NCBI
RefSeq Acc Id: XM_063274205   ⟹   XP_063130275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81521,304,053 - 21,370,539 (-)NCBI
RefSeq Acc Id: NP_001028238   ⟸   NM_001033066
- UniProtKB: Q3ZAU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251832   ⟸   XM_006251770
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006251834   ⟸   XM_006251772
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006251831   ⟸   XM_006251769
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006251835   ⟸   XM_006251773
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006251836   ⟸   XM_006251774
- Peptide Label: isoform X7
- Sequence:
Ensembl Acc Id: ENSRNOP00000035399   ⟸   ENSRNOT00000032704
RefSeq Acc Id: XP_038949183   ⟸   XM_039093255
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949185   ⟸   XM_039093257
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000081184   ⟸   ENSRNOT00000114252
Ensembl Acc Id: ENSRNOP00000093499   ⟸   ENSRNOT00000102887
Ensembl Acc Id: ENSRNOP00000092577   ⟸   ENSRNOT00000111596
Ensembl Acc Id: ENSRNOP00000076372   ⟸   ENSRNOT00000105389
RefSeq Acc Id: XP_063130275   ⟸   XM_063274205
- Peptide Label: isoform X5
Protein Domains
DDHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZAU5-F1-model_v2 AlphaFold Q3ZAU5 1-855 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699599
Promoter ID:EPDNEW_R10123
Type:multiple initiation site
Name:Ddhd1_1
Description:DDHD domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01520,032,155 - 20,032,215EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308576 AgrOrtholog
BioCyc Gene G2FUF-14207 BioCyc
BioCyc Pathway PWY-8052 [2-arachidonoylglycerol biosynthesis] BioCyc
BioCyc Pathway Image PWY-8052 BioCyc
Ensembl Genes ENSRNOG00000009481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032704 ENTREZGENE
  ENSRNOT00000032704.7 UniProtKB/TrEMBL
  ENSRNOT00000102887 ENTREZGENE
  ENSRNOT00000102887.2 UniProtKB/TrEMBL
  ENSRNOT00000111596 ENTREZGENE
  ENSRNOT00000111596.2 UniProtKB/TrEMBL
  ENSRNOT00000114252 ENTREZGENE
  ENSRNOT00000114252.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314879 IMAGE-MGC_LOAD
InterPro DDHD UniProtKB/TrEMBL
KEGG Report rno:305816 UniProtKB/TrEMBL
MGC_CLONE MGC:125147 IMAGE-MGC_LOAD
NCBI Gene 305816 ENTREZGENE
PANTHER PA-PL1 PHOSPHOLIPASE FAMILY UniProtKB/TrEMBL
  PHOSPHOLIPASE DDHD1 UniProtKB/TrEMBL
Pfam DDHD UniProtKB/TrEMBL
PhenoGen Ddhd1 PhenoGen
PROSITE DDHD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009481 RatGTEx
SMART DDHD UniProtKB/TrEMBL
UniProt A0A8I5ZK24 ENTREZGENE
  A0A8I5ZSB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADX7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AX45 ENTREZGENE, UniProtKB/TrEMBL
  A6KE05_RAT UniProtKB/TrEMBL
  A6KE06_RAT UniProtKB/TrEMBL
  F7FIA6_RAT UniProtKB/TrEMBL
  Q3ZAU5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ddhd1  DDHD domain containing 1  Ddhd1_predicted  DDHD domain containing 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ddhd1_predicted  DDHD domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED