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Gene: Ppm1k (protein phosphatase, Mg2+/Mn2+ dependent, 1K) Rattus norvegicus

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Symbol:

Ppm1k

Name:

protein phosphatase, Mg2+/Mn2+ dependent, 1K

RGD ID:

1308501

Description:

Predicted to enable manganese ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in branched-chain amino acid catabolic process; regulation of intracellular signal transduction; and regulation of mitochondrial membrane permeability involved in apoptotic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human PPM1K (protein phosphatase, Mg2+/Mn2+ dependent 1K); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

[3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)]-phosphatase; BCKDH; BDP; branched-chain alpha-ketoacid dehydrogenase phosphatase; LOC312381; protein phosphatase 1K (PP2C domain containing); protein phosphatase 1K, mitochondrial; RGD1308501; similar to protein phosphatase type 1B (formely 2C), Mg-dependent, beta isoform

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Is Marker For:

Strains: NP.P-(D4Rat119-D4Rat55)/Iusm

Candidate Gene For:

Alc22

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	88,942,226 - 88,969,139 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	88,942,386 - 88,969,136 (+)	Ensembl				GRCr8
mRatBN7.2	4	87,612,198 - 87,638,993 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	87,612,204 - 87,636,152 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	92,834,896 - 92,858,476 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	88,610,297 - 88,633,873 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	86,972,698 - 86,996,493 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	88,694,395 - 88,721,374 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	88,694,583 - 88,718,533 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	153,515,886 - 153,542,848 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	87,366,273 - 87,390,223 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	82,377,577 - 82,401,560 (+)	NCBI		Celera
RGSC_v3.1	4	87,610,775 - 87,633,432 (+)	NCBI
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congestive heart failure (ISO)

maple syrup urine disease (ISO,ISS)

mild variant of maple syrup urine disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-dexrazoxane (ISO)

(+)-schisandrin B (EXP)

(-)-alpha-phellandrene (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

afimoxifene (ISO)

aflatoxin B1 (EXP,ISO)

alpha-phellandrene (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

arsenous acid (ISO)

avobenzone (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol AF (ISO)

bisphenol F (ISO)

bromobenzene (EXP)

butanal (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clobetasol (ISO)

clofibrate (ISO)

cyclosporin A (ISO)

cyproconazole (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

formaldehyde (ISO)

geldanamycin (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

metformin (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (ISO)

nefazodone (EXP)

nimesulide (EXP)

orphenadrine (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenformin (EXP)

phenobarbital (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

propanal (ISO)

propiconazole (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

tibolone (ISO)

Torularhodin (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

branched-chain amino acid catabolic process (ISO)

regulation of mitochondrial membrane permeability involved in apoptotic process (IEA,ISO)

Cellular Component

mitochondrial matrix (IEA,ISO)

mitochondrion (IEA,ISO)

Molecular Function

[3-methyl-2-oxobutanoate dehydrogenase (lipoamide)]-phosphatase activity (IEA)

cation binding (IEA)

hydrolase activity (IEA)

manganese ion binding (ISO)

metal ion binding (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein serine/threonine phosphatase activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:18614015

Genomics

Comparative Map Data

Ppm1k
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	88,942,226 - 88,969,139 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	88,942,386 - 88,969,136 (+)	Ensembl				GRCr8
mRatBN7.2	4	87,612,198 - 87,638,993 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	87,612,204 - 87,636,152 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	92,834,896 - 92,858,476 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	88,610,297 - 88,633,873 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	86,972,698 - 86,996,493 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	88,694,395 - 88,721,374 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	88,694,583 - 88,718,533 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	153,515,886 - 153,542,848 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	87,366,273 - 87,390,223 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	82,377,577 - 82,401,560 (+)	NCBI		Celera
RGSC_v3.1	4	87,610,775 - 87,633,432 (+)	NCBI
Cytogenetic Map	4	q24	NCBI

PPM1K
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	88,257,620 - 88,284,561 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	88,257,620 - 88,284,769 (-)	Ensembl			hg38	GRCh38
GRCh37	4	89,178,772 - 89,205,713 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	89,402,041 - 89,424,771 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	89,540,223 - 89,562,926	NCBI
Celera	4	86,477,986 - 86,502,345 (-)	NCBI		Celera
Cytogenetic Map	4	q22.1	NCBI
HuRef	4	84,930,206 - 84,957,427 (-)	NCBI		HuRef
CHM1_1	4	89,155,271 - 89,182,497 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	91,588,591 - 91,615,539 (-)	NCBI		T2T-CHM13v2.0

Ppm1k
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	57,483,487 - 57,512,537 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	57,483,487 - 57,512,453 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	57,506,502 - 57,535,552 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	57,506,502 - 57,535,468 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	57,456,496 - 57,485,420 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	57,436,080 - 57,465,004 (-)	NCBI		MGSCv36	mm8
Celera	6	58,258,708 - 58,287,865 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	27.82	NCBI

Ppm1k
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955474	12,229,090 - 12,253,542 (+)	Ensembl
ChiLan1.0	NW_004955474	12,229,658 - 12,250,783 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPM1K
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	86,262,715 - 86,289,942 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	86,525,109 - 86,552,355 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	80,548,652 - 80,575,555 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	91,272,137 - 91,298,754 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	91,272,142 - 91,298,274 (-)	Ensembl			panPan2	panpan1.1

PPM1K
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	11,599,758 - 11,624,777 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	11,597,814 - 11,623,390 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	30,329,727 - 30,353,840 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	11,653,777 - 11,677,917 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	11,651,762 - 11,677,927 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	11,737,507 - 11,761,632 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	11,562,769 - 11,586,479 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	28,330,916 - 28,355,020 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ppm1k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	29,790,018 - 29,813,598 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936685	742,075 - 766,307 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936685	742,081 - 765,728 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPM1K
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	130,748,259 - 130,772,931 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	130,748,207 - 130,772,936 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PPM1K
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	36,627,053 - 36,649,482 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	36,627,746 - 36,643,367 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	15,376,272 - 15,399,159 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppm1k
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	15,817,375 - 15,850,800 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624757	15,817,351 - 15,850,652 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ppm1k
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	83,366,662 - 83,391,129 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ppm1k
168 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	707
Count of miRNA genes:	281
Interacting mature miRNAs:	346
Transcripts:	ENSRNOT00000009202
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	80216705	104243248	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
2306794	Ean2	Experimental allergic neuritis QTL 2	6.4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	4	82790777	97183061	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Markers in Region

RH130143

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	87,636,629 - 87,636,811 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	88,719,011 - 88,719,192	NCBI	Rnor6.0
Rnor_5.0	4	153,540,485 - 153,540,666	UniSTS	Rnor5.0
RGSC_v3.4	4	87,390,701 - 87,390,882	UniSTS	RGSC3.4
Celera	4	82,402,038 - 82,402,219	UniSTS
RH 3.4 Map	4	546.3	UniSTS
Cytogenetic Map	4	q24	UniSTS

Related Rat Strains

The following Strains have been annotated to Ppm1k

NP.P-(D4Rat119-D4Rat55)/Iusm

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009202 ⟹ ENSRNOP00000009202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	88,942,386 - 88,969,136 (+)	Ensembl
mRatBN7.2 Ensembl	4	87,612,204 - 87,636,152 (+)	Ensembl
Rnor_6.0 Ensembl	4	88,694,583 - 88,718,533 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087835 ⟹ ENSRNOP00000069912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	88,695,590 - 88,717,515 (+)	Ensembl

RefSeq Acc Id:

NM_001107863 ⟹ NP_001101333

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,349 - 88,966,303 (+)	NCBI
mRatBN7.2	4	87,612,204 - 87,636,152 (+)	NCBI
Rnor_6.0	4	88,694,583 - 88,718,533 (+)	NCBI
Rnor_5.0	4	153,515,886 - 153,542,848 (+)	NCBI
RGSC_v3.4	4	87,366,273 - 87,390,223 (+)	RGD
Celera	4	82,377,577 - 82,401,560 (+)	RGD

Sequence:

show sequence

CAGAAACATACTCCTCCGGGTCTCCATTTGGCCAGCTGCGGTTGAAATTTTTTTTCAAGAATTT
CCAGGAGTGGAGGAGGCTGTGGCTTCTCTAATTGCTTGGTCTGGAGATCAGAATCAACAGAGAA
CTCAGCTTTATTTATCATCCAAGAAAGCCTTCCCTTCCTTCCATTAGCCAATTAAGAAATTTAC
AGACACAAGCCATTACAAGGTACATCCTTTTTCTTCAAGGAATTCTACTATTGCCCTATTTGTC
TTTCCCTGTGACTGGGGCCTTTGGAGTTGCACTATGTTATCAACGGCCTTCATTACTTTGGTGA
GAAGTGGTAGGAACCAGGTGAAGAAGAGAGTGTTGTTAAGCTCCATCCTCCTGCAGGACCACAG
ACAGATGACTCCTGCCTGCTACTGCTCCATTTCGGAGCCCAGGTGTTCTCGGTTTGATCCGGAC
GGAAGTGGGCAGCCAGCCACTTGGGACAATTTTGGGATCTGGGATAACCGCATTGATGAGCCAA
TTCTGTTGCCACCTAGCATCAAGTATGGCAAGCCAATTCCCAAAATTAGCCTGGAGAACGTGGG
CTGTGCCTCCCTCATTGGCAAACGAAAAGAAAACGAAGATCGATTTGGGTTCGCACAGTTGACA
GAAGAGGTGCTATACTTTGCAGTCTATGATGGGCATGGAGGCCCTGCAGCTGCTGACTTCTGTC
ACACACACATGGAAAAATGTGTTACGGATTTGCTTCCTCGGGAGAAAGACTTGGAAACTGTCCT
GACCTTGGCCTTTCTAGAAATAGATAAAGCCTTTTCAAGTTATGCCCACCTGTCTGCTGATGCA
AGCCTCCTGACCTCTGGGACTACTGCAACAGTAGCCCTGTTGAGAGATGGTGTTGAACTGGTGG
TAGCCAGTGTTGGAGACAGCCGGGCTCTTTTGTGTAGAAAAGGCAAACCCATGAAGCTGACCAC
TGACCATACCCCAGAGAGAAAAGATGAGAAAGAAAGGATCAAGAAATGCGGTGGGTTTGTAGCT
TGGAATAGCCTGGGACAGCCCCATGTAAATGGCAGACTTGCGATGACAAGGAGTATTGGAGATT
TGGATCTTAAAGCCAGTGGTGTAATAGCAGAACCTGAGACAACCAGGATTAAGCTCTACCACGC
TGACGACAGTTTCCTGGTCCTCACCACCGACGGGATTAACTTCATGGTGAATAGTCAAGAGATC
TGCGACTTTGTCAACCAGTGCCACGATCCTAAAGAAGCAGCTCATGCTGTGACTGAGCAGGCAA
TTCAGTACGGTACTGAAGACAACAGCACTGCCGTAGTAGTGCCCTTTGGTGCCTGGGGAAAATA
CAAGAACTCTGAGATAACCTTCTCATTCAGCAGAAGCTTTGCCTCCAGCGGGCGATGGGCCTGA
TCGTCAGCTCAGAGTCGGTGTTCCTGTGCAGCAGTGTGCCAGTGGGTTTATCGAGAAACTGGTA
ACACACAGAAGGCCACCTGTACCCGTGTGTCATTGTAACTTGATAGATCCCAACAGAGTATATA
TAAGCTTACCAGCCGCACACCCAGTAGTATTTTCATAAATCTGCCTCATCATTATGGTCAACTG
CACATGCTCAGTGTAAGCACGGTCATCATTATGGTCAACTGCACATGCTCAGTGAAAGCACGGT
AACACAGCTGTGAAGCCGATGCGCATCTCTGAGCTGAGTGAGAGAAGAAGCGGTTTTGGTCCAT
TTGATGAGTGATAAATCTATTTGGCTTTCTAAGTTTTTAAGACTAAGAGGCAAATTTAGTTTCT
TTTTAGTAAATTTGTTCATTATTCAGTTGGACAGTTTGTTTTCTTTTTTTTTTTTTTTTTTTTT
TCCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCT
AAATCCCCAACCCCGACAGTTTGTTTTCTAAATTTTGATTGCTAGCCAATCTGTTTTTGCTAGT
GTTTCTTTTTCCATTCTCCGTAGAAAGCAGGTCCTCACTGACTGACCTTGAACTCCGGGGTTCA
AACAGTCTTCCTCTTCAGCCTTTTACCTTTTAATTTTTAATTTTTTTTATTTTTTTAGAGCAGA
ACAAGCATAGATTTATTCAAGAAGTGTGAGAAACATATACCCAGGAGATGGGGAATTCCAAGAA
AGGAATACAAGGGTTGTTTTTAATTAATGTACCAAGGAGTGAAAATAAAACCTAGGTTCTCTGT
TACGGTGTACTCTGGATCACTTATTAAGAAATTTAACCCTGCAAAAGACATGGCTAAAGTGTAT
ACATATTTATAGATAGCTTTCTTGTGCCCTTCCCCATCCATTTCTATTTTTATGTAGTTAAATA
TGCTATATAGTTGTAACTGTTCCTTAATCTCCAAGACTGTACAGACTCTTTGGTCAAAATATGT
AAAGTGAAACACTGACAACATCAGTCTTATGTAAGTTTGCTGCTGTGTGTTTTGTGTATAGTAT
GTTTATATCACTTTCTGTGCACACAGTAAACAATTTGAGTCCTTTATTAGTAAAGATAATATTA
TAACAACTAATACTGTTATAGACATAGCTTGGGGTTCATTTTCCTTGTTTCTAAGATTTATGCA

hide sequence

RefSeq Acc Id:

XM_006236571 ⟹ XP_006236633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,341 - 88,969,139 (+)	NCBI
mRatBN7.2	4	87,612,198 - 87,638,993 (+)	NCBI
Rnor_6.0	4	88,694,395 - 88,721,374 (+)	NCBI
Rnor_5.0	4	153,515,886 - 153,542,848 (+)	NCBI

Sequence:

show sequence

GGGCGCCATGTCGAACAGCTACTGGCCCAATTTGACGTCTGTCTACAGGGCTTAATTGGCAATC
TGAGAGGCCAAATCGCCAGTGCAGGAGGCTCGTTCTTATCTAGATCCGTAATTGGCTCAGATTG
AGGGCGGGCAAGGAGCCCTGCCCTGCTGAGCACCAACTGGCTAGCGTTGTTGTCAATCATCAGA
AACATACTCCTCCGGGTCTCCATTTGGCCAGCTGCGGTTGAAATTTTTTTTCAAGAATTTCCAG
GAGTGGAGGAGGCTGTGGCTTCTCTAATTGCTTGGTCTGGAGATCAGAATCAACAGAGAACTCA
GCTTTATTTATCATCCAAGAAAGCCTTCCCTTCCTTCCATTAGCCAATTAAGAAATTTACAGAC
ACAAGCCATTACAAGGCTATCTATCTATTCGTGGGTATGGAATCATCCAGACAGCATTATCAGC
CTACCAGGGACTACATGCATAAAGAAAAACTGACTTCCCTCTCCAAAGAATGTCCATAGCACCT
CAGGGGTACATCCTTTTTCTTCAAGGAATTCTACTATTGCCCTATTTGTCTTTCCCTGTGACTG
GGGCCTTTGGAGTTGCACTATGTTATCAACGGCCTTCATTACTTTGGTGAGAAGTGGTAGGAAC
CAGGTGAAGAAGAGAGTGTTGTTAAGCTCCATCCTCCTGCAGGACCACAGACAGATGACTCCTG
CCTGCTACTGCTCCATTTCGGAGCCCAGGTGTTCTCGGTTTGATCCGGACGGAAGTGGGCAGCC
AGCCACTTGGGACAATTTTGGGATCTGGGATAACCGCATTGATGAGCCAATTCTGTTGCCACCT
AGCATCAAGTATGGCAAGCCAATTCCCAAAATTAGCCTGGAGAACGTGGGCTGTGCCTCCCTCA
TTGGCAAACGAAAAGAAAACGAAGATCGATTTGGGTTCGCACAGTTGACAGAAGAGGTGCTATA
CTTTGCAGTCTATGATGGGCATGGAGGCCCTGCAGCTGCTGACTTCTGTCACACACACATGGAA
AAATGTGTTACGGATTTGCTTCCTCGGGAGAAAGACTTGGAAACTGTCCTGACCTTGGCCTTTC
TAGAAATAGATAAAGCCTTTTCAAGTTATGCCCACCTGTCTGCTGATGCAAGCCTCCTGACCTC
TGGGACTACTGCAACAGTAGCCCTGTTGAGAGATGGTGTTGAACTGGTGGTAGCCAGTGTTGGA
GACAGCCGGGCTCTTTTGTGTAGAAAAGGCAAACCCATGAAGCTGACCACTGACCATACCCCAG
AGAGAAAAGATGAGAAAGAAAGGATCAAGAAATGCGGTGGGTTTGTAGCTTGGAATAGCCTGGG
ACAGCCCCATGTAAATGGCAGACTTGCGATGACAAGGAGTATTGGAGATTTGGATCTTAAAGCC
AGTGGTGTAATAGCAGAACCTGAGACAACCAGGATTAAGCTCTACCACGCTGACGACAGTTTCC
TGGTCCTCACCACCGACGGGATTAACTTCATGGTGAATAGTCAAGAGATCTGCGACTTTGTCAA
CCAGTGCCACGATCCTAAAGAAGCAGCTCATGCTGTGACTGAGCAGGCAATTCAGTACGGTACT
GAAGACAACAGCACTGCCGTAGTAGTGCCCTTTGGTGCCTGGGGAAAATACAAGAACTCTGAGA
TAACCTTCTCATTCAGCAGAAGCTTTGCCTCCAGCGGGCGATGGGCCTGATCGTCAGCTCAGAG
TCGGTGTTCCTGTGCAGCAGTGTGCCAGTGGGTTTATCGAGAAACTGGTAACACACAGAAGGCC
ACCTGTACCCGTGTGTCATTGTAACTTGATAGATCCCAACAGAGTATATATAAGCTTACCAGCC
GCACACCCAGTAGTATTTTCATAAATCTGCCTCATCATTATGGTCAACTGCACATGCTCAGTGT
AAGCACGGTCATCATTATGGTCAACTGCACATGCTCAGTGAAAGCACGGTAACACAGCTGTGAA
GCCGATGCGCATCTCTGAGCTGAGTGAGAGAAGAAGCGGTTTTGGTCCATTTGATGAGTGATAA
ATCTATTTGGCTTTCTAAGTTTTTAAGACTAAGAGGCAAATTTAGTTTCTTTTTAGTAAATTTG
TTCATTATTCAGTTGGACAGTTTGTTTTCTTTTTTTTTTTTTTTTTTTTTTCCCGGAGCTGGGG
ACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCC
GACAGTTTGTTTTCTAAATTTTGATTGCTAGCCAATCTGTTTTTGCTAGTGTTTCTTTTTCCAT
TCTCCGTAGAAAGCAGGTCCTCACTGACTGACCTTGAACTCCGGGGTTCAAACAGTCTTCCTCT
TCAGCCTTTTACCTTTTAATTTTTAATTTTTTTTATTTTTTTAGAGCAGAACAAGCATAGATTT
ATTCAAGAAGTGTGAGAAACATATACCCAGGAGATGGGGAATTCCAAGAAAGGAATACAAGGGT
TGTTTTTAATTAATGTACCAAGGAGTGAAAATAAAACCTAGGTTCTCTGTTACGGTGTACTCTG
GATCACTTATTAAGAAATTTAACCCTGCAAAAGACATGGCTAAAGTGTATACATATTTATAGAT
AGCTTTCTTGTGCCCTTCCCCATCCATTTCTATTTTTATGTAGTTAAATATGCTATATAGTTGT
AACTGTTCCTTAATCTCCAAGACTGTACAGACTCTTTGGTCAAAATATGTAAAGTGAAACACTG
ACAACATCAGTCTTATGTAAGTTTGCTGCTGTGTGTTTTGTGTATAGTATGTTTATATCACTTT
CTGTGCACACAGTAAACAATTTGAGTCCTTTATTAGTAAAGATAATATTATAACAACTAATACT
GTTATAGACATAGCTTGGGGTTCATTTTCCTTGTTTCTAAGATTTATGCAAAAGAATAAATCTT
TTAAAAAGGATGTTCAAACACATCAGCTTGCTATGTAAATTAGGGGTAAAACCACACCCCTTTT
TACCTACATGTAAAACTTCTGTCAAACTGTGAATCCCTGAATGTGTGTTTGGAATTGATCTATA
TTTTCACAGGGTAATGTGAATTTGATATATGTGCAGTGAGTGTATATATGTATATTTTGAAGTA
ATATAAAATTAAAGGGAACAATCTTGTGGAGCATTTATCAGCTAGCTGTAAATTATTGATTTAT
TTATCTCTAAGGACACTCAACACATTGAGTGTCAGATTCTCTGTAGTAAAGAATCAGTGGTTAT
TGGTAGATAACCACTATATATTAAAAACAAATATGAGGGCCAGATATGATGGCCTATACCTATA
ATCTCAGGCCTTAAGGAGGAGACAAGGGAATCAGGATGGTAACTTTGAGATTAGCCTGAGCAAG
TTCCAGGGTAGCCTGAGTCACAGCTTGTGTCCCAAAACAGAATATCAACAACAAATGTCTGTAA
GAGACATTTTATTATGTGTGATAACCAAAGAACAGGGGCAGACATGTTGTGTGGTAATTTAAAT
ATGAAATTATGGGATCTGAAAAGAACAGGAAATGTTAAAAGCAGCTTGGACTTTGGTGGCAGAA
ACAAAAACAATGAAATATATATATACCTGTCAAGTCTGACATGTTTTCTTTCTTTAACTTTTGT
TTCAAGTATTTAGTAAAAATAAAGAATAAGTCCTCAATAAAGAATCTAATGTCTTTTCATGGAT
ATTAGTTGAAAGGAACAACATTTTTCAGGCATGTTACCTTACACGTGCAGTTCTCCAACATCTG
GGGAGGCCCAGTAATCCTGAATAGCAAGACCCCATGTCAAGGGACAAAACATGGGGAAGAGGAT
GTATGTGCTGTCCAAAGAAGCACGGGAAGAGTAGCCGAGCTTTGGGGCTTTCTTGTTGAGTCCG
GTGTTGGAACAAAACTATGAAAACAACTTTTGAGCATATGGAGGACGTGTAAACTATGTGCACA
GCAAAATTCTCCAGCATAAAAGTGGAATGTGGTGTGTGCTTTGTTTCTGTTTTGTGCTCTTCAC
ATTGCGGTTCCCCCTTTTACTTTGAAACTAGGATCGAGAGTGAACTTGTGATGTTCAGAGGTTT
GAGGGTCGTTCCTAGGTGAAGGTGTGTTCTAGACCTGACAAGGAGGAATCTGTAGATGAAAGCC
TTGGGCGTGTTTGAGCCTGTTTCATCTGGAAAAGGTTTTTGATGGTGGTGATGTTAGGTAGGTA
GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGACAGACTTGTCTCAG
CCTCCTGAGTGCTGAGATTATAGGCATGTGCTTTCATGCCTGATTTTACCCGAAAGAAATTTAA
AAGACAAATTTAGTCCTCCTTGATTAAGCATAAAAAGTACTGGTCTCCACAGGGGCCGGGCTGC
ATCCTTTCCTAGAGGCTTTCTTTCTTAACACACATTTATTAAGATCAAACCTGAATAAAACTAC
ATGTTAATTTTAAAAAATACACATGTCTTTATTTTCTAAGTTTTAGTATTAAAATACAATTTAA
AGAGTATATTATAAACCTTACTGATAAGTATACATGCGTGCCTCTGTTATTGGAAATGGTACAA
GAGTGGAAAATAAGGGACCGTTCTTACAAACTTCTCATTTAGTATCAATTTAGCTGGGGGGTTG
CCATGTGGCTATAAATGATAGAATACAGAAAGTATATTGTATTTATGTGTGCCTTTCATTTACA
TACAGTATGTAGAAAATTTGTGTTGCCATCAGTTATTTGGTGAACCATTATTAAAAAGTATTGA
GACAGTTTAAGATTATAAATTTTTAATTATTTTATCAGTTCAAAAGTAAATGTTGTCCTGCTTC
CTGTCAGCTGTTCATTTGTTAGGATTCTTTGTGTCTCGTCACTGCTTCAAATCTAGGTTTCTTT
TCCCTCTCTGGGGTCAAAGAATCCCTTGGAAGGGATCAGTTTTGCTTCTGTTTGTTTGATATGA
GCTTTCCCATATTATAACATTTAAAAAATTTTATTTTGAAAAGGTAGTAGCATATAATCTAAAA
TATAGAAATTATTTAAAAGTTGACTATTAGCTAATTTTCTAATAATGGATATGTAATTAATCTC
ATGCTAACATAACATGCTTTTCATGTTATGAAACTGTTTCAGCGTGGGACTTGGGGAGTTCACT
TTGGAGTTAGACAACTGTAGCCACGCATTTGTGTTTTCCTCTACTGTGAGGGTTCTCCATATAC
CTGTGCCTGTAAAACACGGGGCCATAAGGTCTGGGTTGTTCCCTGACATTGAATTTCTTAGTTT
TCATTATGAGAATGCCTTAAGCAGGAATAGCAAGCTGTGTTTAACAAGATGAAGAAACCAGACA
TTGGCTTGCCTGTTGTTCTTGGCCAGTAGTTTCTGTGGCAGCTCCCATTGATTGATTGATGGTT
GGAATGGTTCACGGAGTCACAGAATTCTAGATTTTGAGAACTCAAATGTGTGCCACCAGCAAGA
GCAACTGACCTGTGTGGTTGGGTGCCAGTACAAAAGTCAGCACTGTGGTATGACCTAAATTAAC
TGAACTTCTGTTGCATGTCTCTTGTGAATATATCTTTTGTAATTTGTCAAAGTCCTACTTGGTA
CAGTACAGTTGTGGTGAATTTGACTATTGTTTTAAATGTATTGCTAGAGTGACTGTGAACAAAG
GAAAAAAATAAAAGCCCATCTCGACGTTGAAAACATCCTAATAAAATGCACATAATAAACTCTT
CCTAAACTCCT

hide sequence

RefSeq Acc Id:

XM_017592616 ⟹ XP_017448105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,226 - 88,969,139 (+)	NCBI
mRatBN7.2	4	87,612,198 - 87,635,354 (+)	NCBI
Rnor_6.0	4	88,694,395 - 88,717,375 (+)	NCBI

Sequence:

show sequence

GGGCGCCATGTCGAACAGCTACTGGCCCAATTTGACGTCTGTCTACAGGGCTTAATTGGCAATC
TGAGAGGCCAAATCGCCAGTGCAGGAGGCTCGTTCTTATCTAGATCCGTAATTGGCTCAGATTG
AGGGCGGGCAAGGAGCCCTGCCCTGCTGAGCACCAACTGGCTAGCGTTGTTGTCAATCATCAGA
AACATACTCCTCCGGGTCTCCATTTGGCCAGCTGCGGTTGAAATTTTTTTTCAAGAATTTCCAG
GAGTGGAGGAGGCTGTGGCTTCTCTAATTGCTTGGTCTGGAGATCAGAATCAACAGAGAACTCA
GCTTTATTTATCATCCAAGAAAGCCTTCCCTTCCTTCCATTAGCCAATTAAGAAATTTACAGAC
ACAAGCCATTACAAGGAGCTGCAGGAATAGAAACTGCGAAGCCCCTTACCCCCAGGTGTGCACC
AACCCGGTTGAGCAGATGTGGCCTCTGCTGGACCCGTACCCCGGTACATCCTTTTTCTTCAAGG
AATTCTACTATTGCCCTATTTGTCTTTCCCTGTGACTGGGGCCTTTGGAGTTGCACTATGTTAT
CAACGGCCTTCATTACTTTGGTGAGAAGTGGTAGGAACCAGGTGAAGAAGAGAGTGTTGTTAAG
CTCCATCCTCCTGCAGGACCACAGACAGATGACTCCTGCCTGCTACTGCTCCATTTCGGAGCCC
AGGTGTTCTCGGTTTGATCCGGACGGAAGTGGGCAGCCAGCCACTTGGGACAATTTTGGGATCT
GGGATAACCGCATTGATGAGCCAATTCTGTTGCCACCTAGCATCAAGTATGGCAAGCCAATTCC
CAAAATTAGCCTGGAGAACGTGGGCTGTGCCTCCCTCATTGGCAAACGAAAAGAAAACGAAGAT
CGATTTGGGTTCGCACAGTTGACAGAAGAGGTGCTATACTTTGCAGTCTATGATGGGCATGGAG
GCCCTGCAGCTGCTGACTTCTGTCACACACACATGGAAAAATGTGTTACGGATTTGCTTCCTCG
GGAGAAAGACTTGGAAACTGTCCTGACCTTGGCCTTTCTAGAAATAGATAAAGCCTTTTCAAGT
TATGCCCACCTGTCTGCTGATGCAAGCCTCCTGACCTCTGGGACTACTGCAACAGTAGCCCTGT
TGAGAGATGGTGTTGAACTGGTGGTAGCCAGTGTTGGAGACAGCCGGGCTCTTTTGTGTAGAAA
AGGCAAACCCATGAAGCTGACCACTGACCATACCCCAGAGAGAAAAGATGAGAAAGAAAGGATC
AAGAAATGCGGTGGGTTTGTAGCTTGGAATAGCCTGGGACAGCCCCATGTAAATGGCAGACTTG
CGATGACAAGGAGTATTGGAGATTTGGATCTTAAAGCCAGTGGTGTAATAGCAGAACCTGAGAC
AACCAGGATTAAGCTCTACCACGCTGACGACAGTTTCCTGGTCCTCACCACCGACGGGATTAAC
TTCATGGTGAATAGTCAAGAGATCTGCGACTTTGTCAACCAGTGCCACGATCCTAAAGAAGCAG
CTCATGCTGTGACTGAGCAGGCAATTCAGTACGGTACTGAAGACAACAGCACTGCCGTAGTAGT
GCCCTTTGGTGCCTGGGGAAAATACAAGAACTCTGAGATAACCTTCTCATTCAGCAGAAGCTTT
GCCTCCAGCGGGCGATGGGCCTGATCGTCAGCTCAGAGTCGGTGTTCCTGTGCAGCAGTGTGCC
AGTGGGTTTATCGAGAAA

hide sequence

RefSeq Acc Id:

XM_017592617 ⟹ XP_017448106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,341 - 88,969,139 (+)	NCBI
mRatBN7.2	4	87,612,198 - 87,635,354 (+)	NCBI
Rnor_6.0	4	88,694,395 - 88,717,375 (+)	NCBI

Sequence:

show sequence

GGGCGCCATGTCGAACAGCTACTGGCCCAATTTGACGTCTGTCTACAGGGCTTAATTGGCAATC
TGAGAGGCCAAATCGCCAGTGCAGGAGGCTCGTTCTTATCTAGATCCGTAATTGGCTCAGATTG
AGGGCGGGCAAGGAGCCCTGCCCTGCTGAGCACCAACTGGCTAGCGTTGTTGTCAATCATCAGA
AACATACTCCTCCGGGTCTCCATTTGGCCAGCTGCGGTTGAAATTTTTTTTCAAGAATTTCCAG
GAGTGGAGGAGGCTGTGGCTTCTCTAATTGCTTGGTCTGGAGATCAGAATCAACAGAGAACTCA
GCTTTATTTATCATCCAAGAAAGCCTTCCCTTCCTTCCATTAGCCAATTAAGAAATTTACAGAC
ACAAGCCATTACAAGGAGCTGCAGGAATAGAAACTGCGAAGCCCCTTACCCCCAGGTGTGCACC
AACCCGGTTGAGCAGATGTGGCCTCTGCTGGACCCGTACCCCGGCTATCTATCTATTCGTGGGT
ATGGAATCATCCAGACAGCATTATCAGCCTACCAGGGACTACATGCATAAAGAAAAACTGACTT
CCCTCTCCAAAGAATGTCCATAGCACCTCAGGGGTACATCCTTTTTCTTCAAGGAATTCTACTA
TTGCCCTATTTGTCTTTCCCTGTGACTGGGGCCTTTGGAGTTGCACTATGTTATCAACGGCCTT
CATTACTTTGGTGAGAAGTGGTAGGAACCAGGTGAAGAAGAGAGTGTTGTTAAGCTCCATCCTC
CTGCAGGACCACAGACAGATGACTCCTGCCTGCTACTGCTCCATTTCGGAGCCCAGGTGTTCTC
GGTTTGATCCGGACGGAAGTGGGCAGCCAGCCACTTGGGACAATTTTGGGATCTGGGATAACCG
CATTGATGAGCCAATTCTGTTGCCACCTAGCATCAAGTATGGCAAGCCAATTCCCAAAATTAGC
CTGGAGAACGTGGGCTGTGCCTCCCTCATTGGCAAACGAAAAGAAAACGAAGATCGATTTGGGT
TCGCACAGTTGACAGAAGAGGTGCTATACTTTGCAGTCTATGATGGGCATGGAGGCCCTGCAGC
TGCTGACTTCTGTCACACACACATGGAAAAATGTGTTACGGATTTGCTTCCTCGGGAGAAAGAC
TTGGAAACTGTCCTGACCTTGGCCTTTCTAGAAATAGATAAAGCCTTTTCAAGTTATGCCCACC
TGTCTGCTGATGCAAGCCTCCTGACCTCTGGGACTACTGCAACAGTAGCCCTGTTGAGAGATGG
TGTTGAACTGGTGGTAGCCAGTGTTGGAGACAGCCGGGCTCTTTTGTGTAGAAAAGGCAAACCC
ATGAAGCTGACCACTGACCATACCCCAGAGAGAAAAGATGAGAAAGAAAGGATCAAGAAATGCG
GTGGGTTTGTAGCTTGGAATAGCCTGGGACAGCCCCATGTAAATGGCAGACTTGCGATGACAAG
GAGTATTGGAGATTTGGATCTTAAAGCCAGTGGTGTAATAGCAGAACCTGAGACAACCAGGATT
AAGCTCTACCACGCTGACGACAGTTTCCTGGTCCTCACCACCGACGGGATTAACTTCATGGTGA
ATAGTCAAGAGATCTGCGACTTTGTCAACCAGTGCCACGATCCTAAAGAAGCAGCTCATGCTGT
GACTGAGCAGGCAATTCAGTACGGTACTGAAGACAACAGCACTGCCGTAGTAGTGCCCTTTGGT
GCCTGGGGAAAATACAAGAACTCTGAGATAACCTTCTCATTCAGCAGAAGCTTTGCCTCCAGCG
GGCGATGGGCCTGATCGTCAGCTCAGAGTCGGTGTTCCTGTGCAGCAGTGTGCCAGTGGGTTTA
TCGAGAAA

hide sequence

RefSeq Acc Id:

XM_017592619 ⟹ XP_017448108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,566 - 88,969,139 (+)	NCBI
mRatBN7.2	4	87,612,912 - 87,635,354 (+)	NCBI
Rnor_6.0	4	88,695,207 - 88,717,375 (+)	NCBI

Sequence:

show sequence

GCTTCCTCCGGACCTATTTCTCGGCCAGAAGACTCCGGATGCCGGGAGATCTGCTGGGCTGCCC
GGGCTGGAGAGTGTTCTGCCACGTCCAGCTTTGGTCAAGGAGCTGCAGGAATAGAAACTGCGAA
GCCCCTTACCCCCAGGTGTGCACCAACCCGGTTGAGCAGATGTGGCCTCTGCTGGACCCGTACC
CCGGTACATCCTTTTTCTTCAAGGAATTCTACTATTGCCCTATTTGTCTTTCCCTGTGACTGGG
GCCTTTGGAGTTGCACTATGTTATCAACGGCCTTCATTACTTTGGTGAGAAGTGGTAGGAACCA
GGTGAAGAAGAGAGTGTTGTTAAGCTCCATCCTCCTGCAGGACCACAGACAGATGACTCCTGCC
TGCTACTGCTCCATTTCGGAGCCCAGGTGTTCTCGGTTTGATCCGGACGGAAGTGGGCAGCCAG
CCACTTGGGACAATTTTGGGATCTGGGATAACCGCATTGATGAGCCAATTCTGTTGCCACCTAG
CATCAAGTATGGCAAGCCAATTCCCAAAATTAGCCTGGAGAACGTGGGCTGTGCCTCCCTCATT
GGCAAACGAAAAGAAAACGAAGATCGATTTGGGTTCGCACAGTTGACAGAAGAGGTGCTATACT
TTGCAGTCTATGATGGGCATGGAGGCCCTGCAGCTGCTGACTTCTGTCACACACACATGGAAAA
ATGTGTTACGGATTTGCTTCCTCGGGAGAAAGACTTGGAAACTGTCCTGACCTTGGCCTTTCTA
GAAATAGATAAAGCCTTTTCAAGTTATGCCCACCTGTCTGCTGATGCAAGCCTCCTGACCTCTG
GGACTACTGCAACAGTAGCCCTGTTGAGAGATGGTGTTGAACTGGTGGTAGCCAGTGTTGGAGA
CAGCCGGGCTCTTTTGTGTAGAAAAGGCAAACCCATGAAGCTGACCACTGACCATACCCCAGAG
AGAAAAGATGAGAAAGAAAGGATCAAGAAATGCGGTGGGTTTGTAGCTTGGAATAGCCTGGGAC
AGCCCCATGTAAATGGCAGACTTGCGATGACAAGGAGTATTGGAGATTTGGATCTTAAAGCCAG
TGGTGTAATAGCAGAACCTGAGACAACCAGGATTAAGCTCTACCACGCTGACGACAGTTTCCTG
GTCCTCACCACCGACGGGATTAACTTCATGGTGAATAGTCAAGAGATCTGCGACTTTGTCAACC
AGTGCCACGATCCTAAAGAAGCAGCTCATGCTGTGACTGAGCAGGCAATTCAGTACGGTACTGA
AGACAACAGCACTGCCGTAGTAGTGCCCTTTGGTGCCTGGGGAAAATACAAGAACTCTGAGATA
ACCTTCTCATTCAGCAGAAGCTTTGCCTCCAGCGGGCGATGGGCCTGATCGTCAGCTCAGAGTC
GGTGTTCCTGTGCAGCAGTGTGCCAGTGGGTTTATCGAGAAA

hide sequence

RefSeq Acc Id:

XM_039107561 ⟹ XP_038963489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,953,439 - 88,969,139 (+)	NCBI
mRatBN7.2	4	87,623,280 - 87,635,354 (+)	NCBI

RefSeq Acc Id:

XM_063286039 ⟹ XP_063142109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,341 - 88,969,139 (+)	NCBI

RefSeq Acc Id:

XM_063286041 ⟹ XP_063142111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,942,342 - 88,969,139 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101333	(Get FASTA)	NCBI Sequence Viewer
	NP_001430475	(Get FASTA)	NCBI Sequence Viewer
	NP_001430476	(Get FASTA)	NCBI Sequence Viewer
	NP_001430477	(Get FASTA)	NCBI Sequence Viewer
	XP_006236633	(Get FASTA)	NCBI Sequence Viewer
	XP_017448105	(Get FASTA)	NCBI Sequence Viewer
	XP_017448106	(Get FASTA)	NCBI Sequence Viewer
	XP_017448108	(Get FASTA)	NCBI Sequence Viewer
	XP_038963489	(Get FASTA)	NCBI Sequence Viewer
	XP_063142109	(Get FASTA)	NCBI Sequence Viewer
	XP_063142111	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A6K136	(Get FASTA)	NCBI Sequence Viewer
	EDL88032	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009202
	ENSRNOP00000009202.5

RefSeq Acc Id:

NP_001101333 ⟸ NM_001107863

- UniProtKB:

D4A7X5 (UniProtKB/TrEMBL), A6K136 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSTAFITLVRSGRNQVKKRVLLSSILLQDHRQMTPACYCSISEPRCSRFDPDGSGQPATWDNF
GIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASLIGKRKENEDRFGFAQLTEEVLYFAVYDG
HGGPAAADFCHTHMEKCVTDLLPREKDLETVLTLAFLEIDKAFSSYAHLSADASLLTSGTTATV
ALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKCGGFVAWNSLGQPHVNG
RLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPK
EAAHAVTEQAIQYGTEDNSTAVVVPFGAWGKYKNSEITFSFSRSFASSGRWA

hide sequence

RefSeq Acc Id:	XP_006236633 ⟸ XM_006236571
- Peptide Label:	isoform X1
- UniProtKB:	D4A7X5 (UniProtKB/TrEMBL), A6K136 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSTAFITLVRSGRNQVKKRVLLSSILLQDHRQMTPACYCSISEPRCSRFDPDGSGQPATWDNF GIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASLIGKRKENEDRFGFAQLTEEVLYFAVYDG HGGPAAADFCHTHMEKCVTDLLPREKDLETVLTLAFLEIDKAFSSYAHLSADASLLTSGTTATV ALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKCGGFVAWNSLGQPHVNG RLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPK EAAHAVTEQAIQYGTEDNSTAVVVPFGAWGKYKNSEITFSFSRSFASSGRWA hide sequence

RefSeq Acc Id:	XP_017448106 ⟸ XM_017592617
- Peptide Label:	isoform X1
- UniProtKB:	D4A7X5 (UniProtKB/TrEMBL), A6K136 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSTAFITLVRSGRNQVKKRVLLSSILLQDHRQMTPACYCSISEPRCSRFDPDGSGQPATWDNF GIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASLIGKRKENEDRFGFAQLTEEVLYFAVYDG HGGPAAADFCHTHMEKCVTDLLPREKDLETVLTLAFLEIDKAFSSYAHLSADASLLTSGTTATV ALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKCGGFVAWNSLGQPHVNG RLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPK EAAHAVTEQAIQYGTEDNSTAVVVPFGAWGKYKNSEITFSFSRSFASSGRWA hide sequence

RefSeq Acc Id:	XP_017448105 ⟸ XM_017592616
- Peptide Label:	isoform X1
- UniProtKB:	D4A7X5 (UniProtKB/TrEMBL), A6K136 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSTAFITLVRSGRNQVKKRVLLSSILLQDHRQMTPACYCSISEPRCSRFDPDGSGQPATWDNF GIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASLIGKRKENEDRFGFAQLTEEVLYFAVYDG HGGPAAADFCHTHMEKCVTDLLPREKDLETVLTLAFLEIDKAFSSYAHLSADASLLTSGTTATV ALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKCGGFVAWNSLGQPHVNG RLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPK EAAHAVTEQAIQYGTEDNSTAVVVPFGAWGKYKNSEITFSFSRSFASSGRWA hide sequence

RefSeq Acc Id:	XP_017448108 ⟸ XM_017592619
- Peptide Label:	isoform X1
- UniProtKB:	D4A7X5 (UniProtKB/TrEMBL), A6K136 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSTAFITLVRSGRNQVKKRVLLSSILLQDHRQMTPACYCSISEPRCSRFDPDGSGQPATWDNF GIWDNRIDEPILLPPSIKYGKPIPKISLENVGCASLIGKRKENEDRFGFAQLTEEVLYFAVYDG HGGPAAADFCHTHMEKCVTDLLPREKDLETVLTLAFLEIDKAFSSYAHLSADASLLTSGTTATV ALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKCGGFVAWNSLGQPHVNG RLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPK EAAHAVTEQAIQYGTEDNSTAVVVPFGAWGKYKNSEITFSFSRSFASSGRWA hide sequence

Ensembl Acc Id:

ENSRNOP00000069912 ⟸ ENSRNOT00000087835

Ensembl Acc Id:

ENSRNOP00000009202 ⟸ ENSRNOT00000009202

RefSeq Acc Id:	XP_038963489 ⟸ XM_039107561
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063142109 ⟸ XM_063286039
- Peptide Label:	isoform X1
- UniProtKB:	D4A7X5 (UniProtKB/Swiss-Prot), A6K136 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063142111 ⟸ XM_063286041
- Peptide Label:	isoform X1
- UniProtKB:	D4A7X5 (UniProtKB/Swiss-Prot), A6K136 (UniProtKB/Swiss-Prot)

Protein Domains

PPM-type phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7X5-F1-model_v2	AlphaFold	D4A7X5	1-372	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693085

Promoter ID:

EPDNEW_R3610

Type:

initiation region

Name:

Ppm1k_1

Description:

protein phosphatase, Mg2+/Mn2+ dependent, 1K

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	88,694,639 - 88,694,699	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308501	AgrOrtholog
BioCyc Gene	G2FUF-44661	BioCyc
Ensembl Genes	ENSRNOG00000006893	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009202	ENTREZGENE
	ENSRNOT00000009202.7	UniProtKB/Swiss-Prot
Gene3D-CATH	PPM-type phosphatase domain	UniProtKB/Swiss-Prot
InterPro	PP2C	UniProtKB/Swiss-Prot
	PP2C_BS	UniProtKB/Swiss-Prot
	PPM-type-like_dom_sf	UniProtKB/Swiss-Prot
	PPM-type_phosphatase-like_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:312381	UniProtKB/Swiss-Prot
NCBI Gene	312381	ENTREZGENE
PANTHER	PROTEIN PHOSPHATASE	UniProtKB/Swiss-Prot
Pfam	PP2C	UniProtKB/Swiss-Prot
PhenoGen	Ppm1k	PhenoGen
PROSITE	PPM_1	UniProtKB/Swiss-Prot
	PPM_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006893	RatGTEx
SMART	PP2C_SIG	UniProtKB/Swiss-Prot
	PP2Cc	UniProtKB/Swiss-Prot
Superfamily-SCOP	PP2C-like	UniProtKB/Swiss-Prot
UniProt	A6K136	ENTREZGENE
	D4A7X5	ENTREZGENE
	PPM1K_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	D4A7X5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Ppm1k	protein phosphatase, Mg2+/Mn2+ dependent, 1K	Ppm1k	protein phosphatase 1K (PP2C domain containing)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ppm1k	protein phosphatase 1K (PP2C domain containing)	Ppm1k_predicted	protein phosphatase 1K (PP2C domain containing) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ppm1k_predicted	protein phosphatase 1K (PP2C domain containing) (predicted)	RGD1308501_predicted	similar to protein phosphatase type 1B (formely 2C), Mg-dependent, beta isoform (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1308501_predicted	similar to protein phosphatase type 1B (formely 2C), Mg-dependent, beta isoform (predicted)	LOC312381_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC312381_predicted	similar to protein phosphatase type 1B (formely 2C), Mg-dependent, beta isoform (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

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InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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