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Gene: Ogfrl1 (opioid growth factor receptor-like 1) Rattus norvegicus

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Symbol:

Ogfrl1

Name:

opioid growth factor receptor-like 1

RGD ID:

1308498

Description:

Predicted to enable opioid growth factor receptor activity. Predicted to be located in membrane. Orthologous to human OGFRL1 (opioid growth factor receptor like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC316290; MGC116379; opioid growth factor receptor-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OGFRL1 (opioid growth factor receptor like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ogfrl1 (opioid growth factor receptor-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ogfrl1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OGFRL1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OGFRL1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ogfrl1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OGFRL1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OGFRL1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ogfrl1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ogfrl1 (opioid growth factor receptor like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OGFRL1 (opioid growth factor receptor like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ogfrl1 (opioid growth factor receptor-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ogfrl1 (opioid growth factor receptor-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ogfrl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ogfrl1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	33,320,501 - 33,338,742 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	33,324,392 - 33,339,237 (-)	Ensembl				GRCr8
mRatBN7.2	9	25,828,865 - 25,842,424 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	25,828,869 - 25,842,352 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	34,339,261 - 34,352,699 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	39,455,028 - 39,468,464 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	37,767,319 - 37,780,757 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	29,634,178 - 29,647,903 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	29,634,179 - 29,647,903 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	28,469,366 - 28,483,091 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	22,233,997 - 22,247,453 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	23,376,302 - 23,389,627 (-)	NCBI		Celera
RGSC_v3.1	9	22,235,410 - 22,248,865 (-)	NCBI
Cytogenetic Map	9	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

5-azacytidine (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bucladesine (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fentin chloride (EXP)

fluoranthene (ISO)

formaldehyde (ISO)

ivermectin (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

medroxyprogesterone acetate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-methyl-N-nitrosourea (EXP)

nickel dichloride (ISO)

ochratoxin A (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

succimer (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

opioid growth factor receptor activity (IEA)

signaling receptor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Ogfrl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	33,320,501 - 33,338,742 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	33,324,392 - 33,339,237 (-)	Ensembl				GRCr8
mRatBN7.2	9	25,828,865 - 25,842,424 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	25,828,869 - 25,842,352 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	34,339,261 - 34,352,699 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	39,455,028 - 39,468,464 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	37,767,319 - 37,780,757 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	29,634,178 - 29,647,903 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	29,634,179 - 29,647,903 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	28,469,366 - 28,483,091 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	22,233,997 - 22,247,453 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	23,376,302 - 23,389,627 (-)	NCBI		Celera
RGSC_v3.1	9	22,235,410 - 22,248,865 (-)	NCBI
Cytogenetic Map	9	q13	NCBI

OGFRL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	71,288,811 - 71,309,059 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	71,288,811 - 71,309,059 (+)	Ensembl			hg38	GRCh38
GRCh37	6	71,998,514 - 72,018,762 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	72,055,198 - 72,068,694 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	72,055,197 - 72,068,692	NCBI
Celera	6	72,387,075 - 72,400,570 (+)	NCBI		Celera
Cytogenetic Map	6	q13	NCBI
HuRef	6	69,201,147 - 69,210,124 (+)	NCBI		HuRef
CHM1_1	6	72,164,594 - 72,178,088 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	72,469,249 - 72,489,496 (+)	NCBI		T2T-CHM13v2.0

Ogfrl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	23,405,505 - 23,422,282 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	23,405,505 - 23,436,853 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	23,366,424 - 23,383,201 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	23,366,424 - 23,397,772 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	23,373,263 - 23,390,014 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	23,320,699 - 23,337,450 (-)	NCBI		MGSCv36	mm8
Celera	1	23,209,220 - 23,225,831 (-)	NCBI		Celera
Cytogenetic Map	1	A5	NCBI
cM Map	1	9.57	NCBI

Ogfrl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955488	6,256,084 - 6,267,593 (+)	NCBI	ChiLan1.0	ChiLan1.0

OGFRL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	91,266,304 - 91,286,276 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	89,191,715 - 89,208,465 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	69,113,356 - 69,133,498 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	72,408,112 - 72,428,825 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	72,413,208 - 72,421,923 (+)	Ensembl			panPan2	panpan1.1

OGFRL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	33,678,706 - 33,697,193 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	33,678,411 - 33,690,598 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	33,536,247 - 33,556,073 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	34,217,492 - 34,237,341 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	34,217,507 - 34,235,492 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	33,753,000 - 33,772,911 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	33,790,792 - 33,810,676 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	33,901,842 - 33,921,659 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ogfrl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	68,927,347 - 68,946,272 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936618	3,088,265 - 3,098,009 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936618	3,086,926 - 3,103,516 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OGFRL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	51,313,016 - 51,332,327 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	51,312,988 - 51,332,331 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	57,650,902 - 57,670,235 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OGFRL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	3,751,671 - 3,766,288 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	3,735,366 - 3,765,296 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666058	9,699,804 - 9,720,021 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ogfrl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624819	8,539,526 - 8,558,542 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ogfrl1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	100,919,343 - 100,933,022 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ogfrl1
156 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	20
Count of miRNA genes:	20
Interacting mature miRNAs:	20
Transcripts:	ENSRNOT00000019062
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat

Markers in Region

RH142962

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	25,831,639 - 25,831,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	29,636,951 - 29,637,121	NCBI	Rnor6.0
Rnor_5.0	9	28,472,139 - 28,472,309	UniSTS	Rnor5.0
RGSC_v3.4	9	22,236,770 - 22,236,940	UniSTS	RGSC3.4
Celera	9	23,379,075 - 23,379,245	UniSTS
RH 3.4 Map	9	244.2	UniSTS
Cytogenetic Map	9	q13	UniSTS

RH143616

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	33,334,138 - 33,334,455 (+)	Marker Load Pipeline
mRatBN7.2	9	25,837,802 - 25,838,119 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	29,643,113 - 29,643,429	NCBI	Rnor6.0
Rnor_5.0	9	28,478,301 - 28,478,617	UniSTS	Rnor5.0
RGSC_v3.4	9	22,242,932 - 22,243,248	UniSTS	RGSC3.4
Celera	9	23,385,237 - 23,385,551	UniSTS
RH 3.4 Map	9	246.3	UniSTS
Cytogenetic Map	9	q13	UniSTS

RH139012

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	25,831,628 - 25,831,830 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	29,636,940 - 29,637,141	NCBI	Rnor6.0
Rnor_5.0	9	28,472,128 - 28,472,329	UniSTS	Rnor5.0
RGSC_v3.4	9	22,236,759 - 22,236,960	UniSTS	RGSC3.4
Celera	9	23,379,064 - 23,379,265	UniSTS
Cytogenetic Map	9	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019062 ⟹ ENSRNOP00000019062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	33,325,205 - 33,338,655 (-)	Ensembl
mRatBN7.2 Ensembl	9	25,828,869 - 25,842,352 (-)	Ensembl
Rnor_6.0 Ensembl	9	29,634,179 - 29,647,903 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139255 ⟹ ENSRNOP00000111914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	33,324,392 - 33,339,237 (-)	Ensembl

RefSeq Acc Id:

NM_001025708 ⟹ NP_001020879

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	33,325,204 - 33,338,655 (-)	NCBI
mRatBN7.2	9	25,828,865 - 25,842,319 (-)	NCBI
Rnor_6.0	9	29,634,178 - 29,647,903 (-)	NCBI
Rnor_5.0	9	28,469,366 - 28,483,091 (-)	NCBI
RGSC_v3.4	9	22,233,997 - 22,247,453 (-)	RGD
Celera	9	23,376,302 - 23,389,627 (-)	NCBI

Sequence:

show sequence

CGTTGAGCTGTGCGGCGCGGGCCGGGCGAGCTGCCGCCTGCGCCCGAAGCGAGCGGAGCGCGGC
CATGCCCGGGCCCTAGCGCGCTGCCGCAGCCCGCGCCCGCCGCCGCCTCTTCAATGGGCAACCT
GCTCGGCGGGGTCAGCTTCCGCGAGCCCACCACCGTGGAGGACTGCGACTCCACCTGGCAGACC
GACTCGGAGCCCGAGCCTGAGCAGCCGGGGCCGGCAGGCGGTGGCGAGGGCCAGGAGCAGGACG
AGCGGGAGCAGCCCGAGCAGCCTCCCGAGAGAGCCGGAGGGCGACCCCGCGCCAGTCCGGTGCC
CGAGGACCACGCGGAGGCGGCGGGCGCGGAGCAGGGTGGTGATTCCACGGAAGGAAATGCTAAA
CCAAAGAGAAGCTTCTATGCGGCGAGGGATCTGTACAAGTACCGACATCAGTACCCAAACTTCA
AAGATATCCGATACCAAAATGACTTGAGCAACCTTCGCTTTTATAAGAATAAAATTCCGTTTAA
GCCAGATGGTGTTTACATTGAAGAGGTTCTGAATAAGTGGAAAGGAGACTATGAAAAGCTAGAG
CACAACCACACTTACATCCAATGGCTTTTCCCCCTGAGAGAACAAGGCTTGAACTTTTATGCTA
AAGAATTAACCACATATGAAATTGAGGAATTCAAAAAGACAAAGGAAGCAATCAGAAGATTCCT
CTTGGCTTACAAAATGATGCTAGAGTTCTTCGGGATAAAGTTGATTGATAAGACTGGAAATGTT
GCTCGGGCCGTGAACTGGCAAGAACGGTTTCAACATCTGAATGAGTCTCAGCACAACTATTTAA
GGATTACCCGAATTCTTAAAAGCCTTGGTGAGCTTGGGTACGAGAGTTTTAAATCTCCTCTGGT
AAAATTCATTCTTCATGAGGCTCTCGTGGAAAACACTATTCCCAATATCAAACAGAGTGCCCTG
GAGTACTTCGTTTATACAATTCGAGACAGGAGGGAGAGGAGAAAGCTCCTGCGGTTTGCCCAGA
AACATTACACACCATCAGAGAATTTTATATGGGGGCCACCTAAGAAAGAACAACCAGAGAGAAG
CAAAGCCCAGAAAACACCTACTCTGCCCGCTTTAGGCTCGAACGGCCAAACTTCTACGCACAAG
AAATCTAAGGACTCCAAAAATTCCTCAGCAGCTAGTCACTTAAATAACAAAACAGTGGAAGAAA
AAAAGGTGGCATCTAGAGAGCCCGGGGAGGAGACAGACAAGCCAAGCCCAGAGGCCAGCAGTGA
AGATACCAAGCCAAGAAACTCGGAGGACGACAATGCTGCCGACCAATCAGAGTCTCCACCCAAG
AAAACCGTTAATGATTCCGCAGGAAAAGGGGAATGTCCGACGACTTCTTCTGAAAAAGATGGAG
AAGGGGAAAACCAGAGCAAAGACTCTGAAAACCCTGAAAATACCAGTTGTCACGCTGAGGTAGT
GTCACAGCAAAATGTCACAAACCCACAAACCAGTTCTGGTTAAGGGAGTTGAAAGAAAAACCCT
GCTGTCTAATGTATCCTGAAGGACAGAGATGAGGTCGCATTTAAAATGTTAGCCACCTGTGACT
TTTGCTGTAAGCCCTTTGTTCTCCTTTTTTATTTTGGATCACGATGAATTGAACATTTAATAAG
AAATCTTAAGACCAGATCCAATAAAAGAATGTATTTAGGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039083549 ⟹ XP_038939477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	33,320,501 - 33,338,742 (-)	NCBI
mRatBN7.2	9	25,828,865 - 25,842,424 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020879	(Get FASTA)	NCBI Sequence Viewer
	XP_038939477	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99205	(Get FASTA)	NCBI Sequence Viewer
	EDM18627	(Get FASTA)	NCBI Sequence Viewer
	EDM18628	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019062
GenBank Protein	Q4KLH3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020879 ⟸ NM_001025708

- UniProtKB:

Q4KLH3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGNLLGGVSFREPTTVEDCDSTWQTDSEPEPEQPGPAGGGEGQEQDEREQPEQPPERAGGRPRA
SPVPEDHAEAAGAEQGGDSTEGNAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNK
IPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAI
RRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFK
SPLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPKKEQ
PERSKAQKTPTLPALGSNGQTSTHKKSKDSKNSSAASHLNNKTVEEKKVASREPGEETDKPSPE
ASSEDTKPRNSEDDNAADQSESPPKKTVNDSAGKGECPTTSSEKDGEGENQSKDSENPENTSCH
AEVVSQQNVTNPQTSSG

hide sequence

Ensembl Acc Id:

ENSRNOP00000019062 ⟸ ENSRNOT00000019062

RefSeq Acc Id:	XP_038939477 ⟸ XM_039083549
- Peptide Label:	isoform X1
- UniProtKB:	F1M9G3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000111914 ⟸ ENSRNOT00000139255

Protein Domains

Opioid growth factor receptor (OGFr) conserved

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLH3-F1-model_v2	AlphaFold	Q4KLH3	1-465	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696579

Promoter ID:

EPDNEW_R7104

Type:

multiple initiation site

Name:

Ogfrl1_1

Description:

opioid growth factor receptor-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	29,647,936 - 29,647,996	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308498	AgrOrtholog
BioCyc Gene	G2FUF-27972	BioCyc
Ensembl Genes	ENSRNOG00000014142	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000019062	ENTREZGENE
IMAGE_CLONE	IMAGE:7384201	IMAGE-MGC_LOAD
InterPro	OGF_rcpt	UniProtKB/Swiss-Prot
	OGFr	UniProtKB/Swiss-Prot
KEGG Report	rno:316290	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116379	IMAGE-MGC_LOAD
NCBI Gene	316290	ENTREZGENE
PANTHER	OPIOID GROWTH FACTOR RECEPTOR-LIKE PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR14015	UniProtKB/Swiss-Prot
Pfam	OGFr_N	UniProtKB/Swiss-Prot
PhenoGen	Ogfrl1	PhenoGen
RatGTEx	ENSRNOG00000014142	RatGTEx
UniProt	A0ABK0LLU1_RAT	UniProtKB/TrEMBL
	A6JJA4_RAT	UniProtKB/TrEMBL
	F1M9G3	ENTREZGENE, UniProtKB/TrEMBL
	OGRL1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ogfrl1	opioid growth factor receptor-like 1	Ogfrl1_predicted	opioid growth factor receptor-like 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ogfrl1_predicted	opioid growth factor receptor-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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