Tmt1a (thiol methyltransferase 1A) - Rat Genome Database

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Gene: Tmt1a (thiol methyltransferase 1A) Rattus norvegicus
Analyze
Symbol: Tmt1a
Name: thiol methyltransferase 1A
RGD ID: 1308407
Description: Predicted to enable mRNA m(6)A methyltransferase activity and thiol S-methyltransferase activity. Predicted to be involved in lncRNA processing; odontogenesis; and osteoblast differentiation. Predicted to be located in endoplasmic reticulum and lipid droplet. Orthologous to human TMT1A (thiol methyltransferase 1A); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315306; methyltransferase like 7A; methyltransferase like 7A-like; methyltransferase-like protein 7A; Mettl7a; MGC124657; MGC125112; RGD1308407; similar to DKFZP586A0522 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,330,141 - 133,377,172 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7133,330,447 - 133,338,959 (+)EnsemblGRCr8
mRatBN7.27131,452,099 - 131,460,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,451,641 - 131,460,154 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7133,255,206 - 133,263,188 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,480,786 - 135,488,768 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,393,315 - 135,401,297 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,973,447 - 142,021,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,973,553 - 141,981,432 (+)Ensemblrn6Rnor6.0
Rnor_5.07139,783,755 - 139,790,601 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47139,062,222 - 139,062,833 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7127,930,100 - 127,938,790 (+)NCBICelera
RGSC_v3.17139,138,688 - 139,139,270 (+)NCBI
Cytogenetic Map7q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)
endometriosis  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
amphibole asbestos  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (EXP)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
clothianidin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
glafenine  (EXP)
glycidyl methacrylate  (ISO)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
inulin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (EXP,ISO)
Licochalcone B  (ISO)
mercury dibromide  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methylparaben  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenanthrene  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
withaferin A  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endoplasmic reticulum  (IEA,ISO)
lipid droplet  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23376485  


Genomics

Comparative Map Data
Tmt1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,330,141 - 133,377,172 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7133,330,447 - 133,338,959 (+)EnsemblGRCr8
mRatBN7.27131,452,099 - 131,460,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,451,641 - 131,460,154 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7133,255,206 - 133,263,188 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,480,786 - 135,488,768 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,393,315 - 135,401,297 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,973,447 - 142,021,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,973,553 - 141,981,432 (+)Ensemblrn6Rnor6.0
Rnor_5.07139,783,755 - 139,790,601 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47139,062,222 - 139,062,833 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7127,930,100 - 127,938,790 (+)NCBICelera
RGSC_v3.17139,138,688 - 139,139,270 (+)NCBI
Cytogenetic Map7q36NCBI
TMT1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,925,015 - 50,932,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,923,472 - 50,932,510 (+)Ensemblhg38GRCh38
GRCh371251,318,798 - 51,326,291 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,604,801 - 49,612,567 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1250,120,003 - 50,127,771 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1248,351,406 - 48,359,173 (+)NCBIHuRef
CHM1_11251,284,850 - 51,292,617 (+)NCBICHM1_1
T2T-CHM13v2.01250,887,081 - 50,895,782 (+)NCBIT2T-CHM13v2.0
Tmt1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,201,969 - 100,227,882 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,202,021 - 100,226,543 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3815100,304,145 - 100,330,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,304,140 - 100,328,662 (+)Ensemblmm10GRCm38
MGSCv3715100,135,248 - 100,144,779 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3615100,132,851 - 100,142,382 (+)NCBIMGSCv36mm8
Celera15102,455,999 - 102,465,409 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.25NCBI
Tmt1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555471,356,530 - 1,365,189 (+)NCBIChiLan1.0ChiLan1.0
TMT1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,254,364 - 43,262,620 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,250,340 - 43,259,382 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,820,917 - 37,828,732 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,725,645 - 38,731,272 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,725,645 - 38,731,272 (-)EnsemblpanPan2panpan1.1
TMT1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,858,792 - 3,866,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,857,454 - 3,866,448 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2742,390,191 - 42,397,499 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0273,906,646 - 3,914,172 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,906,646 - 3,914,197 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,873,032 - 3,880,554 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,860,922 - 3,868,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,786,434 - 42,793,962 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmt1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,607,835 - 64,682,961 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,481,909 - 8,557,010 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,482,226 - 8,556,990 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMT1A
(Sus scrofa - pig)		 No map positions available.
TMT1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,141,887 - 47,148,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,141,867 - 47,149,110 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037198,953,483 - 198,960,630 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmt1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248161,449,058 - 1,455,379 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248161,449,782 - 1,455,275 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmt1a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11262,748,233 - 262,757,146 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmt1a
192 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:92
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000052075
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH135356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,459,258 - 131,459,443 (+)MAPPERmRatBN7.2
Rnor_6.07141,980,547 - 141,980,731NCBIRnor6.0
Rnor_5.07139,789,716 - 139,789,900UniSTSRnor5.0
Celera7127,937,905 - 127,938,089UniSTS
RH 3.4 Map71050.51UniSTS
Cytogenetic Map7q36UniSTS
RH137248  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,459,855 - 131,460,038 (+)MAPPERmRatBN7.2
Rnor_6.07141,981,144 - 141,981,326NCBIRnor6.0
Rnor_5.07139,790,313 - 139,790,495UniSTSRnor5.0
Celera7127,938,502 - 127,938,684UniSTS
RH 3.4 Map71076.2UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000052075   ⟹   ENSRNOP00000040338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7133,331,038 - 133,338,956 (+)Ensembl
mRatBN7.2 Ensembl7131,452,190 - 131,460,154 (+)Ensembl
Rnor_6.0 Ensembl7141,973,553 - 141,981,432 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108360   ⟹   ENSRNOP00000088857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7133,330,447 - 133,338,959 (+)Ensembl
mRatBN7.2 Ensembl7131,451,641 - 131,460,154 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114081   ⟹   ENSRNOP00000086147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7133,330,534 - 133,338,951 (+)Ensembl
mRatBN7.2 Ensembl7131,452,048 - 131,459,416 (+)Ensembl
RefSeq Acc Id: NM_001037355   ⟹   NP_001032432
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,330,978 - 133,338,959 (+)NCBI
mRatBN7.27131,452,172 - 131,460,154 (+)NCBI
Rnor_6.07141,973,553 - 141,981,432 (+)NCBI
Rnor_5.07139,783,755 - 139,790,601 (+)NCBI
Celera7127,930,100 - 127,938,790 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079337   ⟹   XP_038935265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,330,141 - 133,338,953 (+)NCBI
mRatBN7.27131,452,099 - 131,460,154 (+)NCBI
RefSeq Acc Id: XM_039079338   ⟹   XP_038935266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,330,141 - 133,335,563 (+)NCBI
mRatBN7.27131,452,099 - 131,456,758 (+)NCBI
RefSeq Acc Id: XM_063263674   ⟹   XP_063119744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,330,141 - 133,377,172 (+)NCBI
RefSeq Acc Id: NP_001032432   ⟸   NM_001037355
- UniProtKB: Q3KRE2 (UniProtKB/TrEMBL),   F1MA49 (UniProtKB/TrEMBL),   A0A9K3Y7R7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040338   ⟸   ENSRNOT00000052075
RefSeq Acc Id: XP_038935265   ⟸   XM_039079337
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A343 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935266   ⟸   XM_039079338
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000088857   ⟸   ENSRNOT00000108360
Ensembl Acc Id: ENSRNOP00000086147   ⟸   ENSRNOT00000114081
RefSeq Acc Id: XP_063119744   ⟸   XM_063263674
- Peptide Label: isoform X3
Protein Domains
Methyltransferase type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KRE2-F1-model_v2 AlphaFold Q3KRE2 1-244 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695656
Promoter ID:EPDNEW_R6179
Type:initiation region
Name:Mettl7a_1
Description:methyltransferase like 7A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07141,973,563 - 141,973,623EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308407 AgrOrtholog
BioCyc Gene G2FUF-32029 BioCyc
Ensembl Genes ENSRNOG00000001376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000052075.6 UniProtKB/TrEMBL
  ENSRNOT00000108360.2 UniProtKB/TrEMBL
  ENSRNOT00000114081 ENTREZGENE
  ENSRNOT00000114081.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5623503 IMAGE-MGC_LOAD
InterPro Methyltransf_11 UniProtKB/TrEMBL
  SAM-dependent_MTases-like UniProtKB/TrEMBL
  Thiol_S-MT UniProtKB/TrEMBL
KEGG Report rno:315306 UniProtKB/TrEMBL
MGC_CLONE MGC:124657 IMAGE-MGC_LOAD
NCBI Gene 315306 ENTREZGENE
PANTHER METHYLTRANSFERASE LIKE 7B UniProtKB/TrEMBL
  METHYLTRANSFERASE-LIKE 7A1-RELATED UniProtKB/TrEMBL
Pfam Methyltransf_11 UniProtKB/TrEMBL
PhenoGen Tmt1a PhenoGen
RatGTEx ENSRNOG00000001376 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8I6A343 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A702_RAT UniProtKB/TrEMBL
  A0A9K3Y7R7 ENTREZGENE, UniProtKB/TrEMBL
  F1MA49 ENTREZGENE
  Q3KRE2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1MA49 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-25 Tmt1a  thiol methyltransferase 1A  Mettl7a  methyltransferase like 7A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Mettl7a  methyltransferase like 7A  LOC100362962  methyltransferase like 7A-like  Data merged from RGD:2323731 1643240 APPROVED
2010-05-06 LOC100362962  methyltransferase like 7A-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Mettl7a  methyltransferase like 7A  RGD1308407  similar to DKFZP586A0522 protein  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1308407  similar to DKFZP586A0522 protein  RGD1308407_predicted  similar to DKFZP586A0522 protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308407_predicted  similar to DKFZP586A0522 protein (predicted)  LOC315306_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315306_predicted  similar to DKFZP586A0522 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL