Chst11 (carbohydrate sulfotransferase 11) - Rat Genome Database

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Gene: Chst11 (carbohydrate sulfotransferase 11) Rattus norvegicus
Analyze
Symbol: Chst11
Name: carbohydrate sulfotransferase 11
RGD ID: 1308400
Description: Predicted to enable N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity; chondroitin 4-sulfotransferase activity; and dermatan 4-sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within several processes, including negative regulation of transforming growth factor beta receptor signaling pathway; post-anal tail morphogenesis; and skeletal system development. Predicted to be located in Golgi membrane. Orthologous to human CHST11 (carbohydrate sulfotransferase 11); PARTICIPATES IN sulfite oxidase deficiency pathway; chondroitin sulfate biosynthetic pathway; sulfur metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C4S-1; C4ST; C4ST-1; C4ST1; carbohydrate (chondroitin 4) sulfotransferase 11; chondroitin 4-O-sulfotransferase 1; chondroitin 4-sulfotransferase 1; LOC314694
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,412,121 - 22,630,577 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl722,415,686 - 22,630,441 (-)EnsemblGRCr8
mRatBN7.2720,524,535 - 20,743,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx722,492,350 - 22,707,381 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,655,107 - 24,870,149 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,432,117 - 24,647,158 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)Ensemblrn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera717,709,216 - 17,922,331 (-)NCBICelera
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-palmitoylglycerol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
epichlorohydrin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hexaconazole  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
Thrombin  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10722746   PMID:11056388   PMID:15057822   PMID:16079159   PMID:19946888   PMID:21138417   PMID:27996060  


Genomics

Comparative Map Data
Chst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,412,121 - 22,630,577 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl722,415,686 - 22,630,441 (-)EnsemblGRCr8
mRatBN7.2720,524,535 - 20,743,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx722,492,350 - 22,707,381 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,655,107 - 24,870,149 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,432,117 - 24,647,158 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)Ensemblrn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera717,709,216 - 17,922,331 (-)NCBICelera
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Cytogenetic Map7q13NCBI
CHST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,455,295 - 104,762,014 (+)Ensemblhg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
T2T-CHM13v2.012104,418,595 - 104,723,625 (+)NCBIT2T-CHM13v2.0
Chst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)Ensemblmm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBIMGSCv36mm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.66NCBI
Chst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)Ensembl
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
CHST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,522,706 - 112,827,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,518,967 - 112,824,262 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,035,480 - 102,340,084 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,730,321 - 105,735,380 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,431,075 - 105,731,172 (+)EnsemblpanPan2panpan1.1
CHST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,555,629 - 33,810,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,555,628 - 33,810,558 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1033,472,156 - 33,730,826 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01034,395,250 - 34,654,055 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,398,784 - 34,654,634 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11034,130,242 - 34,389,255 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,413,800 - 34,672,705 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,607,391 - 34,867,023 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,875,838 - 17,082,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,886,254 - 10,092,221 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,886,269 - 10,092,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,788,572 - 80,067,795 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1579,788,558 - 80,068,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,185,065 - 83,190,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,662,890 - 99,982,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,665,290 - 99,981,977 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037145,029,522 - 145,339,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,223,561 - 4,391,218 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247504,227,229 - 4,391,177 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Chst11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11165,244,523 - 165,458,490 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Chst11
1549 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:60
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000012017
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat

Markers in Region
D7Wox26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,712,075 - 20,712,261 (+)MAPPERmRatBN7.2
Rnor_6.0726,828,923 - 26,829,108NCBIRnor6.0
Rnor_5.0726,950,426 - 26,950,611UniSTSRnor5.0
RGSC_v3.4722,919,371 - 22,919,557RGDRGSC3.4
RGSC_v3.4722,919,372 - 22,919,557UniSTSRGSC3.4
Celera717,891,175 - 17,891,360UniSTS
RGSC_v3.1722,939,643 - 22,939,828RGD
RH 3.4 Map7118.5UniSTS
RH 3.4 Map7118.5RGD
RH 2.0 Map7115.1RGD
Cytogenetic Map7q13UniSTS
D7Cebr2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,582,703 - 20,582,936 (+)MAPPERmRatBN7.2
Rnor_6.0726,699,150 - 26,699,382NCBIRnor6.0
Rnor_5.0726,822,613 - 26,822,845UniSTSRnor5.0
RGSC_v3.4722,787,519 - 22,787,751UniSTSRGSC3.4
Celera717,763,327 - 17,763,559UniSTS
Cytogenetic Map7q13UniSTS
BF393168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,585,380 - 20,585,531 (+)MAPPERmRatBN7.2
Rnor_6.0726,701,827 - 26,701,977NCBIRnor6.0
Rnor_5.0726,825,290 - 26,825,440UniSTSRnor5.0
RGSC_v3.4722,790,196 - 22,790,346UniSTSRGSC3.4
Celera717,766,004 - 17,766,154UniSTS
RH 3.4 Map7121.1UniSTS
Cytogenetic Map7q13UniSTS
BF399916  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,587,968 - 20,588,184 (+)MAPPERmRatBN7.2
Rnor_6.0726,704,396 - 26,704,611NCBIRnor6.0
Rnor_5.0726,827,340 - 26,827,555UniSTSRnor5.0
RGSC_v3.4722,792,958 - 22,793,173UniSTSRGSC3.4
Celera717,768,681 - 17,768,896UniSTS
RH 3.4 Map7115.95UniSTS
Cytogenetic Map7q13UniSTS
UniSTS:532265  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,528,760 - 20,528,901 (+)MAPPERmRatBN7.2
Rnor_6.0726,646,083 - 26,646,223NCBIRnor6.0
Rnor_5.0726,771,616 - 26,771,756UniSTSRnor5.0
Celera717,709,877 - 17,710,017UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 90 89 58 97 58 6 368 198 12 141 88 92 31 19 19

Sequence


Ensembl Acc Id: ENSRNOT00000012017   ⟹   ENSRNOP00000012017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,415,686 - 22,630,441 (-)Ensembl
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)Ensembl
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087536   ⟹   ENSRNOP00000073810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl726,645,970 - 26,690,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130475   ⟹   ENSRNOP00000100407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,415,686 - 22,526,503 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142388   ⟹   ENSRNOP00000104600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,415,686 - 22,568,054 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149870   ⟹   ENSRNOP00000110136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,415,686 - 22,578,736 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160751   ⟹   ENSRNOP00000109331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,415,686 - 22,578,709 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172313   ⟹   ENSRNOP00000105281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,415,686 - 22,602,075 (-)Ensembl
RefSeq Acc Id: NM_001108079   ⟹   NP_001101549
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,415,686 - 22,630,441 (-)NCBI
mRatBN7.2720,528,100 - 20,742,861 (-)NCBI
Rnor_6.0726,645,422 - 26,859,716 (-)NCBI
Rnor_5.0726,767,389 - 26,981,343 (-)NCBI
RGSC_v3.4722,721,892 - 22,950,084 (-)RGD
Celera717,709,216 - 17,922,331 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241200   ⟹   XP_006241262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,630,577 (-)NCBI
mRatBN7.2720,524,535 - 20,743,008 (-)NCBI
Rnor_6.0726,641,856 - 26,861,124 (-)NCBI
Rnor_5.0726,767,389 - 26,981,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079035   ⟹   XP_038934963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,526,501 (-)NCBI
mRatBN7.2720,524,535 - 20,641,363 (-)NCBI
RefSeq Acc Id: XM_039079036   ⟹   XP_038934964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,461,783 (-)NCBI
mRatBN7.2720,524,535 - 20,574,208 (-)NCBI
RefSeq Acc Id: XM_063263437   ⟹   XP_063119507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,412,121 - 22,578,775 (-)NCBI
RefSeq Acc Id: NP_001101549   ⟸   NM_001108079
- UniProtKB: P69478 (UniProtKB/Swiss-Prot),   A6IFH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241262   ⟸   XM_006241200
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q5L8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073810   ⟸   ENSRNOT00000087536
Ensembl Acc Id: ENSRNOP00000012017   ⟸   ENSRNOT00000012017
RefSeq Acc Id: XP_038934963   ⟸   XM_039079035
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934964   ⟸   XM_039079036
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119507   ⟸   XM_063263437
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000100407   ⟸   ENSRNOT00000130475
Ensembl Acc Id: ENSRNOP00000105281   ⟸   ENSRNOT00000172313
Ensembl Acc Id: ENSRNOP00000109331   ⟸   ENSRNOT00000160751
Ensembl Acc Id: ENSRNOP00000110136   ⟸   ENSRNOT00000149870
Ensembl Acc Id: ENSRNOP00000104600   ⟸   ENSRNOT00000142388

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P69478-F1-model_v2 AlphaFold P69478 1-352 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695109
Promoter ID:EPDNEW_R5634
Type:initiation region
Name:Chst11_1
Description:carbohydrate sulfotransferase 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0726,859,728 - 26,859,788EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308400 AgrOrtholog
BioCyc Gene G2FUF-34577 BioCyc
BioCyc Pathway PWY-6567 [chondroitin sulfate biosynthesis] BioCyc
BioCyc Pathway Image PWY-6567 BioCyc
Ensembl Genes ENSRNOG00000008885 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012017 ENTREZGENE
  ENSRNOT00000130475 ENTREZGENE
  ENSRNOT00000160751 ENTREZGENE
InterPro Carb_sulfotrans_8-10 UniProtKB/Swiss-Prot
  Sulfotransferase UniProtKB/Swiss-Prot
KEGG Report rno:314694 UniProtKB/Swiss-Prot
NCBI Gene 314694 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE 11 UniProtKB/Swiss-Prot
  PTHR12137 UniProtKB/Swiss-Prot
Pfam Sulfotransfer_2 UniProtKB/Swiss-Prot
PhenoGen Chst11 PhenoGen
RatGTEx ENSRNOG00000008885 RatGTEx
UniProt A0A8L2Q5L8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7K2_RAT UniProtKB/TrEMBL
  A0ABK0LK39_RAT UniProtKB/TrEMBL
  A0ABK0LT67_RAT UniProtKB/TrEMBL
  A0ABK0LXH2_RAT UniProtKB/TrEMBL
  A0ABK0LY03_RAT UniProtKB/TrEMBL
  A6IFH2 ENTREZGENE, UniProtKB/TrEMBL
  CHSTB_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Chst11  carbohydrate sulfotransferase 11  Chst11  carbohydrate (chondroitin 4) sulfotransferase 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-02-04 Chst11  carbohydrate (chondroitin 4) sulfotransferase 11  Chst11  carbohydrate sulfotransferase 11   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Chst11  carbohydrate sulfotransferase 11   Chst11_predicted  carbohydrate sulfotransferase 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chst11_predicted  carbohydrate sulfotransferase 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED