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Gene: Lrrc26 (leucine rich repeat containing 26) Rattus norvegicus

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Symbol:

Lrrc26

Name:

leucine rich repeat containing 26

RGD ID:

1308398

Description:

Predicted to enable potassium channel activator activity; transmembrane transporter binding activity; and voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated potassium channel complex. Orthologous to human LRRC26 (leucine rich repeat containing 26); INTERACTS WITH alpha-Zearalanol; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BK channel auxiliary gamma subunit LRRC26; BK channel auxilliary gamma subunit LRRC26; leucine-rich repeat-containing protein 26; LOC311803; RGD1308398; similar to hypothetical protein MGC37548

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	28,500,517 - 28,501,843 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	28,500,517 - 28,501,843 (+)	Ensembl				GRCr8
mRatBN7.2	3	8,102,361 - 8,103,687 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,102,361 - 8,103,687 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	11,206,881 - 11,208,207 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,793,111 - 19,794,437 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	17,982,954 - 17,984,280 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	2,506,426 - 2,507,752 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,506,426 - 2,507,752 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	2,487,839 - 2,489,165 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	3,452,457 - 3,453,783 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	2,928,903 - 2,930,229 (+)	NCBI		Celera
RGSC_v3.1	3	3,452,456 - 3,453,783 (+)	NCBI
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

5-aza-2'-deoxycytidine (ISO)

aldehydo-D-glucose (ISO)

alpha-Zearalanol (EXP)

apigenin (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

dexamethasone (ISO)

fructose (ISO)

glucose (ISO)

monosodium L-glutamate (ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

potassium dichromate (ISO)

resveratrol (ISO)

S-nitrosoglutathione (ISO)

temozolomide (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

positive regulation of voltage-gated potassium channel activity (ISO)

potassium ion transmembrane transport (IEA,ISO)

Cellular Component

cytoskeleton (IEA)

plasma membrane (IEA,ISO)

voltage-gated potassium channel complex (IBA,IEA,ISO,ISS)

Molecular Function

potassium channel activator activity (IBA,IEA,ISO)

potassium channel regulator activity (IEA,ISO,ISS)

protein binding (ISO)

transmembrane transporter binding (IBA,IEA,ISO)

voltage-gated potassium channel activity (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19199708	PMID:20613726	PMID:22547800	PMID:24906643

Genomics

Comparative Map Data

Lrrc26
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	28,500,517 - 28,501,843 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	28,500,517 - 28,501,843 (+)	Ensembl				GRCr8
mRatBN7.2	3	8,102,361 - 8,103,687 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,102,361 - 8,103,687 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	11,206,881 - 11,208,207 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,793,111 - 19,794,437 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	17,982,954 - 17,984,280 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	2,506,426 - 2,507,752 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,506,426 - 2,507,752 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	2,487,839 - 2,489,165 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	3,452,457 - 3,453,783 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	2,928,903 - 2,930,229 (+)	NCBI		Celera
RGSC_v3.1	3	3,452,456 - 3,453,783 (+)	NCBI
Cytogenetic Map	3	p13	NCBI

LRRC26
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	137,168,758 - 137,170,051 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	137,168,758 - 137,170,051 (-)	Ensembl			hg38	GRCh38
GRCh37	9	140,063,210 - 140,064,503 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	139,183,031 - 139,184,312 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	110,577,036 - 110,578,146 (-)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	109,523,227 - 109,524,508 (-)	NCBI		HuRef
CHM1_1	9	140,211,899 - 140,213,180 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	149,406,438 - 149,407,731 (-)	NCBI		T2T-CHM13v2.0

Lrrc26
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	25,179,923 - 25,181,205 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	25,179,927 - 25,181,192 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	25,289,911 - 25,291,193 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	25,289,915 - 25,291,180 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	25,145,431 - 25,146,713 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	25,111,956 - 25,113,185 (+)	NCBI		MGSCv36	mm8
Celera	2	25,017,421 - 25,018,703 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	17.14	NCBI

Lrrc26
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	5,178,631 - 5,180,462 (-)	Ensembl
ChiLan1.0	NW_004955513	5,178,631 - 5,180,462 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRC26
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	2,227,500 - 2,230,362 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	2,230,299 - 2,232,695 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	108,228,889 - 108,230,178 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	137,198,298 - 137,199,602 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	137,198,298 - 137,199,602 (-)	Ensembl			panPan2	panpan1.1

LRRC26
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	48,490,172 - 48,492,141 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	48,490,995 - 48,492,031 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	47,681,002 - 47,682,961 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	49,355,847 - 49,357,806 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	49,356,392 - 49,357,698 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	48,132,258 - 48,134,217 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	48,431,069 - 48,433,028 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	48,478,228 - 48,480,187 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lrrc26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	202,560,725 - 202,562,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	813,111 - 814,220 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	813,097 - 814,264 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC26
(Sus scrofa - pig)

No map positions available.

LRRC26
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	1,018,560 - 1,020,556 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	1,019,263 - 1,020,460 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666058	4,284,701 - 4,285,976 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc26
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	774,137 - 777,095 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lrrc26
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	11,894,156 - 11,895,810 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lrrc26
12 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	69
Count of miRNA genes:	58
Interacting mature miRNAs:	58
Transcripts:	ENSRNOT00000015242
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH144153

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	28,499,868 - 28,500,048 (+)	Marker Load Pipeline
mRatBN7.2	3	8,101,712 - 8,101,892 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	2,505,778 - 2,505,957	NCBI	Rnor6.0
Rnor_5.0	3	2,487,191 - 2,487,370	UniSTS	Rnor5.0
RGSC_v3.4	3	3,451,809 - 3,451,988	UniSTS	RGSC3.4
Celera	3	2,928,255 - 2,928,434	UniSTS
Cytogenetic Map	3	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	1	7	35	16	23	2	2	2	3	38	13	28	6	62	21	8	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015242 ⟹ ENSRNOP00000015242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	28,500,517 - 28,501,843 (+)	Ensembl
mRatBN7.2 Ensembl	3	8,102,361 - 8,103,687 (+)	Ensembl
Rnor_6.0 Ensembl	3	2,506,426 - 2,507,752 (+)	Ensembl

RefSeq Acc Id:

NM_001014053 ⟹ NP_001014075

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	28,500,517 - 28,501,843 (+)	NCBI
mRatBN7.2	3	8,102,361 - 8,103,687 (+)	NCBI
Rnor_6.0	3	2,506,426 - 2,507,752 (+)	NCBI
Rnor_5.0	3	2,487,839 - 2,489,165 (+)	NCBI
RGSC_v3.4	3	3,452,457 - 3,453,783 (+)	RGD
Celera	3	2,928,903 - 2,930,229 (+)	RGD

Sequence:

show sequence

GAAACTGTTTTGCTAGGGCGGGAGAGTTAATACTTGTGCAGGTGAGGCAGGGACAAGCTCTGGG
TCACCTGAACTCCGAAGCCACACAGGGATCAAGGTCCCCTCCTGTTCTCGAGCTGCCTCCATGA
GGGGTTCTTTTTTCTCGCGGCTTCCGCCGCAACTCTCTCTGCTGCTGCTGCTGCTGCTGCTGTT
GTCGTGGAGACGAGTCTGGACCCAGGAGCACATTGGAACTGACCCTTCCAAATCCCCGGTGGCC
CCCGTATGCCCCGAGGCATGTTCATGTTCACCAGGAGGCAAGGCCAATTGCTCCGCGCTGGCGC
TGCCCGCGGTACCGGCGGGCCTGAGCTGGCAAGTACGCTCACTGCTGCTGGATCGCAATCGAGT
GAGCACACTACCTCCAGGTGCCTTCGCCGATGCAGGCGCACTGCTATACCTAGTCCTGCGGGAG
AACCGGCTTCGGTCGGTGCACGCGCGAGCTTTCTGGGGTCTGGGAGTGTTGCAACGGCTGGACC
TGAGCTCCAACCAGCTGGAAACTCTGTCTCCTGGCACCTTCACGCCTCTGCGAGCGCTGAGTTT
CCTCTCCCTAGCGGGTAACCGGCTGGCACTCCTGGAGCCCTCGATCCTGGGCCCGCTCCCTTTA
CTGCGGGTGCTCAGCCTGCAGGACAATTCACTATCGGCACTCGAGGCGGGTTTGCTGAATAGCT
TGCCTGCCCTCGACGTGTTGCGCTTGCATGGCAACCCCTGGGCGTGCAGCTGCGCGCTGCGCCC
GCTTTGCACCTGGCTGCGTAAGCACCCGCGTCCCACTTCAGAAACTGAGACCCTGCTCTGTGTG
TCTCCAAAACTTCAAACGCTCAACCTACTGACAGACTTTCCGGACAACGCCTTCAAACAGTGCA
CGCAGTCACTCGCTGCGCGAGACCTGGCGGTGGTCTATGCTCTCGGGCCGGCCTCTTTCCTTGC
CAGTTTAGCCATCTGCCTGGCATTGGGCTCGGTACTCACTGCTTGTGGTGCACGGCGCCGCCGC
CGCCGCACCACAGTGCGCCACTTAATAAGGAGACAGCCAGACCCCGAGGGCCCAGCCTCCCTGG
AGGATGTTGGGAGCCCTACAACAACAGCTATCCAAGCCTAAGGGTTCCGCTGTTGTTTCTAGCG
CTCCTGTAGCATCCCGCACTTTGAAAACTGTCCCCAAATCCCCGATCCTCCCTTCACATTCCCT
GTAGGCGTCAACAATAGACAAAACCCGGAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014075	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61729	(Get FASTA)	NCBI Sequence Viewer
	EDL93615	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015242
	ENSRNOP00000015242.2
GenBank Protein	Q6P7C4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014075 ⟸ NM_001014053
- Peptide Label:	precursor
- UniProtKB:	Q6P7C4 (UniProtKB/Swiss-Prot), A6JT32 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRGSFFSRLPPQLSLLLLLLLLLSWRRVWTQEHIGTDPSKSPVAPVCPEACSCSPGGKANCSAL ALPAVPAGLSWQVRSLLLDRNRVSTLPPGAFADAGALLYLVLRENRLRSVHARAFWGLGVLQRL DLSSNQLETLSPGTFTPLRALSFLSLAGNRLALLEPSILGPLPLLRVLSLQDNSLSALEAGLLN SLPALDVLRLHGNPWACSCALRPLCTWLRKHPRPTSETETLLCVSPKLQTLNLLTDFPDNAFKQ CTQSLAARDLAVVYALGPASFLASLAICLALGSVLTACGARRRRRRTTVRHLIRRQPDPEGPAS LEDVGSPTTTAIQA hide sequence

Ensembl Acc Id:

ENSRNOP00000015242 ⟸ ENSRNOT00000015242

Protein Domains

LRRCT LRRNT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P7C4-F1-model_v2	AlphaFold	Q6P7C4	1-334	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691869

Promoter ID:

EPDNEW_R2394

Type:

initiation region

Name:

Lrrc26_1

Description:

leucine rich repeat containing 26

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	2,506,454 - 2,506,514	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308398	AgrOrtholog
BioCyc Gene	G2FUF-50463	BioCyc
Ensembl Genes	ENSRNOG00000011457	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000015242	ENTREZGENE
	ENSRNOT00000015242.4	UniProtKB/Swiss-Prot
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5598709	IMAGE-MGC_LOAD
InterPro	Cys-rich_flank_reg_C	UniProtKB/Swiss-Prot
	KCNMA1_auxiliary	UniProtKB/Swiss-Prot
	Leu-rich_rpt	UniProtKB/Swiss-Prot
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:311803	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72588	IMAGE-MGC_LOAD
NCBI Gene	311803	ENTREZGENE
PANTHER	GH08155P	UniProtKB/Swiss-Prot
	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26	UniProtKB/Swiss-Prot
Pfam	LRR_8	UniProtKB/Swiss-Prot
PhenoGen	Lrrc26	PhenoGen
PROSITE	LRR	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011457	RatGTEx
SMART	LRR_TYP	UniProtKB/Swiss-Prot
	LRRCT	UniProtKB/Swiss-Prot
Superfamily-SCOP	L domain-like	UniProtKB/Swiss-Prot
UniProt	A6JT32	ENTREZGENE, UniProtKB/TrEMBL
	LRC26_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-26	Lrrc26	leucine rich repeat containing 26	RGD1308398	similar to hypothetical protein MGC37548	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308398	similar to hypothetical protein MGC37548	RGD1308398_predicted	similar to hypothetical protein MGC37548 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308398_predicted	similar to hypothetical protein MGC37548 (predicted)	LOC311803_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311803_predicted	similar to hypothetical protein MGC37548 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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